Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47178 * 239.99572 * 3 2 1 5 5 H 1.48496 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47325 * 120.00091 * 3 2 1 7 7 C 1.39725 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00184 * 159.67081 * 7 2 1 9 9 C 1.41020 * 119.99791 * 339.67328 * 7 2 1 10 10 C 1.41628 * 120.99258 * 327.00371 * 9 7 2 11 11 N 1.35563 * 118.06368 * 179.97438 * 10 9 7 12 12 C 1.34609 * 121.14032 * 0.02562 * 11 10 9 13 13 O 1.21919 * 118.56930 * 179.97438 * 12 11 10 14 14 N 1.33002 * 122.86673 * 359.97438 * 12 11 10 15 15 C 1.32294 * 121.10080 * 359.97438 * 14 12 11 16 16 O 1.35102 * 120.59344 * 180.02562 * 15 14 12 17 17 C 1.47344 * 108.80809 * 179.97438 * 11 10 9 18 18 C 1.53879 * 104.12353 * 359.93237 * 17 11 10 19 19 O 1.34481 * 128.89229 * 359.97438 * 10 9 7 20 20 H 0.97004 * 119.99708 * 0.02562 * 1 2 3 21 21 H 0.96698 * 114.00659 * 0.02562 * 16 15 14 22 22 H 1.09000 * 110.52072 * 118.62892 * 17 11 10 23 23 H 1.08994 * 110.52356 * 241.23630 * 17 11 10 24 24 H 1.09005 * 110.47848 * 118.75060 * 18 17 11 25 25 H 1.08999 * 110.48053 * 241.38209 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.0986 1.6963 -1.2125 5 1 1.2799 2.7464 -0.0006 6 1 3.0986 1.6964 1.2125 7 6 2.0094 -1.2100 0.0005 8 1 3.0390 -1.2393 -0.3244 9 6 1.3701 -2.3931 0.4253 10 6 0.3840 -2.3647 1.4415 11 7 -0.1927 -3.5369 1.8035 12 6 0.1593 -4.6962 1.2169 13 8 -0.3893 -5.7230 1.5792 14 7 1.0794 -4.7705 0.2594 15 6 1.7055 -3.6879 -0.1721 16 8 2.6381 -3.7751 -1.1457 17 6 -1.1784 -3.2731 2.8664 18 6 -1.0978 -1.7519 3.0841 19 8 -0.0877 -1.3109 2.1311 20 1 -0.4850 0.8401 -0.0004 21 1 2.7842 -4.6739 -1.4711 22 1 -2.1781 -3.5599 2.5401 23 1 -0.9081 -3.8045 3.7788 24 1 -2.0580 -1.2841 2.8667 25 1 -0.7860 -1.5287 4.1044 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301964.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -84.499538 kcal Electronic energy + Delta-G solvation = -15647.327788 eV Core-core repulsion = 12819.625263 eV Total energy + Delta-G solvation = -2827.702525 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.76338 -40.13156 -39.14270 -36.44114 -35.64152 -34.57177 -32.03046 -30.52496 -26.71298 -25.01177 -24.73091 -23.24468 -20.57157 -19.84120 -18.68359 -18.06167 -17.28116 -16.93438 -16.28313 -16.17356 -16.04622 -15.03959 -14.98007 -14.96460 -14.16842 -14.07194 -13.43991 -13.12023 -13.00509 -12.80057 -12.35922 -12.06344 -11.64274 -11.21989 -10.93513 -10.64378 -10.56838 -9.03456 -8.48834 -6.07158 0.12282 1.05807 1.49466 1.54926 1.59116 1.60769 2.17899 2.35622 2.77420 2.86390 3.27492 3.35382 3.69574 3.89289 4.08972 4.36769 4.56709 4.65765 4.67206 4.87841 5.43794 5.72419 6.10906 6.39818 6.48625 6.76026 6.99179 7.08120 7.42659 8.53826 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.013444 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.042531 B = 2082.152915 C = 2906.489329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.471 4.471 8 H 0.080 0.920 9 C -0.079 4.079 10 C 0.259 3.741 11 N -0.544 5.544 12 C 0.642 3.358 13 O -0.625 6.625 14 N -0.646 5.646 15 C 0.421 3.579 16 O -0.431 6.431 17 C 0.065 3.935 18 C 0.036 3.964 19 O -0.261 6.261 20 H 0.283 0.717 21 H 0.420 0.580 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 3.064 4.395 5.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.503 4.503 8 H 0.098 0.902 9 C -0.087 4.087 10 C 0.101 3.899 11 N -0.276 5.276 12 C 0.345 3.655 13 O -0.510 6.510 14 N -0.407 5.407 15 C 0.226 3.774 16 O -0.226 6.226 17 C -0.056 4.056 18 C -0.038 4.038 19 O -0.166 6.166 20 H 0.093 0.907 21 H 0.277 0.723 22 H 0.121 0.879 23 H 0.131 0.869 24 H 0.136 0.864 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.838 2.598 4.409 5.186 hybrid contribution -0.106 0.535 -0.025 0.546 sum -0.944 3.133 4.384 5.470 Atomic orbital electron populations 1.69817 1.08486 1.30153 1.36553 1.26312 0.95315 1.03387 0.92671 0.85345 0.78697 0.76710 0.79521 1.19046 1.19915 1.19033 1.18783 0.98849 0.90997 1.41701 0.90162 1.17356 1.01527 0.92120 0.97698 1.20592 0.97533 0.77634 0.94110 1.47355 1.36661 1.08234 1.35327 1.16799 0.84209 0.81798 0.82705 1.90775 1.59191 1.33120 1.67929 1.69222 1.19233 1.29656 1.22615 1.21788 0.83690 0.88754 0.83176 1.84945 1.51939 1.37583 1.48178 1.23211 0.93612 0.97575 0.91217 1.24680 0.93431 0.90894 0.94842 1.87131 1.53171 1.27479 1.48840 0.90660 0.72260 0.87949 0.86857 0.86378 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.80 10.95 21.80 0.24 -40.56 15 2 C 0.04 1.78 4.80 85.17 0.41 2.19 15 3 Si 0.97 37.56 29.61 68.60 2.03 39.59 15 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 7 C -0.47 -24.12 8.73 23.31 0.20 -23.91 15 8 H 0.08 4.02 7.92 -2.91 -0.02 4.00 15 9 C -0.08 -4.02 5.63 -19.61 -0.11 -4.13 15 10 C 0.26 12.37 6.94 84.95 0.59 12.96 15 11 N -0.54 -24.62 3.09 -763.04 -2.36 -26.98 15 12 C 0.64 32.96 8.45 179.66 1.52 34.48 15 13 O -0.63 -34.49 17.66 -5.05 -0.09 -34.58 15 14 N -0.65 -32.06 10.36 -434.34 -4.50 -36.56 15 15 C 0.42 19.91 8.09 86.78 0.70 20.62 15 16 O -0.43 -16.80 13.17 -83.78 -1.10 -17.90 15 17 C 0.07 2.11 7.50 86.51 0.65 2.76 15 18 C 0.04 1.02 8.23 72.28 0.59 1.62 15 19 O -0.26 -11.16 8.60 -77.47 -0.67 -11.82 15 20 H 0.28 12.97 8.30 -92.71 -0.77 12.20 15 21 H 0.42 11.69 8.99 -74.06 -0.67 11.02 15 22 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 23 H 0.11 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.12 2.78 8.14 -2.38 -0.02 2.76 15 25 H 0.13 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -70.23 230.89 -1.31 -71.54 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.58 Total: 10.70 kcal Atomic # 6 Polarization: 42.02 SS G_CDS: 4.55 Total: 46.57 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.62 Total: -104.10 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -1.86 Total: -64.30 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -70.23 -1.31 -71.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301964.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.957 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds