Wall clock time and date at job start Mon Mar 30 2020 02:51:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31074 * 1
3 3 Si 1.86799 * 120.00182 * 2 1
4 4 H 1.48502 * 109.47178 * 239.99572 * 3 2 1
5 5 H 1.48496 * 109.47156 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47325 * 120.00091 * 3 2 1
7 7 C 1.39725 * 120.00062 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00184 * 159.67081 * 7 2 1
9 9 C 1.41020 * 119.99791 * 339.67328 * 7 2 1
10 10 C 1.41628 * 120.99258 * 327.00371 * 9 7 2
11 11 N 1.35563 * 118.06368 * 179.97438 * 10 9 7
12 12 C 1.34609 * 121.14032 * 0.02562 * 11 10 9
13 13 O 1.21919 * 118.56930 * 179.97438 * 12 11 10
14 14 N 1.33002 * 122.86673 * 359.97438 * 12 11 10
15 15 C 1.32294 * 121.10080 * 359.97438 * 14 12 11
16 16 O 1.35102 * 120.59344 * 180.02562 * 15 14 12
17 17 C 1.47344 * 108.80809 * 179.97438 * 11 10 9
18 18 C 1.53879 * 104.12353 * 359.93237 * 17 11 10
19 19 O 1.34481 * 128.89229 * 359.97438 * 10 9 7
20 20 H 0.97004 * 119.99708 * 0.02562 * 1 2 3
21 21 H 0.96698 * 114.00659 * 0.02562 * 16 15 14
22 22 H 1.09000 * 110.52072 * 118.62892 * 17 11 10
23 23 H 1.08994 * 110.52356 * 241.23630 * 17 11 10
24 24 H 1.09005 * 110.47848 * 118.75060 * 18 17 11
25 25 H 1.08999 * 110.48053 * 241.38209 * 18 17 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3107 0.0000 0.0000
3 14 2.2448 1.6177 0.0000
4 1 3.0986 1.6963 -1.2125
5 1 1.2799 2.7464 -0.0006
6 1 3.0986 1.6964 1.2125
7 6 2.0094 -1.2100 0.0005
8 1 3.0390 -1.2393 -0.3244
9 6 1.3701 -2.3931 0.4253
10 6 0.3840 -2.3647 1.4415
11 7 -0.1927 -3.5369 1.8035
12 6 0.1593 -4.6962 1.2169
13 8 -0.3893 -5.7230 1.5792
14 7 1.0794 -4.7705 0.2594
15 6 1.7055 -3.6879 -0.1721
16 8 2.6381 -3.7751 -1.1457
17 6 -1.1784 -3.2731 2.8664
18 6 -1.0978 -1.7519 3.0841
19 8 -0.0877 -1.3109 2.1311
20 1 -0.4850 0.8401 -0.0004
21 1 2.7842 -4.6739 -1.4711
22 1 -2.1781 -3.5599 2.5401
23 1 -0.9081 -3.8045 3.7788
24 1 -2.0580 -1.2841 2.8667
25 1 -0.7860 -1.5287 4.1044
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261301964.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:08
Heat of formation + Delta-G solvation = -84.499538 kcal
Electronic energy + Delta-G solvation = -15647.327788 eV
Core-core repulsion = 12819.625263 eV
Total energy + Delta-G solvation = -2827.702525 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.063 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.76338 -40.13156 -39.14270 -36.44114 -35.64152 -34.57177 -32.03046 -30.52496
-26.71298 -25.01177 -24.73091 -23.24468 -20.57157 -19.84120 -18.68359 -18.06167
-17.28116 -16.93438 -16.28313 -16.17356 -16.04622 -15.03959 -14.98007 -14.96460
-14.16842 -14.07194 -13.43991 -13.12023 -13.00509 -12.80057 -12.35922 -12.06344
-11.64274 -11.21989 -10.93513 -10.64378 -10.56838 -9.03456 -8.48834 -6.07158
0.12282 1.05807 1.49466 1.54926 1.59116 1.60769 2.17899 2.35622
2.77420 2.86390 3.27492 3.35382 3.69574 3.89289 4.08972 4.36769
4.56709 4.65765 4.67206 4.87841 5.43794 5.72419 6.10906 6.39818
6.48625 6.76026 6.99179 7.08120 7.42659 8.53826
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.029434 B = 0.013444 C = 0.009631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.042531 B = 2082.152915 C = 2906.489329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.821 5.821
2 C 0.037 3.963
3 Si 0.975 3.025
4 H -0.266 1.266
5 H -0.274 1.274
6 H -0.266 1.266
7 C -0.471 4.471
8 H 0.080 0.920
9 C -0.079 4.079
10 C 0.259 3.741
11 N -0.544 5.544
12 C 0.642 3.358
13 O -0.625 6.625
14 N -0.646 5.646
15 C 0.421 3.579
16 O -0.431 6.431
17 C 0.065 3.935
18 C 0.036 3.964
19 O -0.261 6.261
20 H 0.283 0.717
21 H 0.420 0.580
22 H 0.102 0.898
23 H 0.113 0.887
24 H 0.118 0.882
25 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.499 3.064 4.395 5.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C -0.177 4.177
3 Si 0.797 3.203
4 H -0.190 1.190
5 H -0.199 1.199
6 H -0.190 1.190
7 C -0.503 4.503
8 H 0.098 0.902
9 C -0.087 4.087
10 C 0.101 3.899
11 N -0.276 5.276
12 C 0.345 3.655
13 O -0.510 6.510
14 N -0.407 5.407
15 C 0.226 3.774
16 O -0.226 6.226
17 C -0.056 4.056
18 C -0.038 4.038
19 O -0.166 6.166
20 H 0.093 0.907
21 H 0.277 0.723
22 H 0.121 0.879
23 H 0.131 0.869
24 H 0.136 0.864
25 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -0.838 2.598 4.409 5.186
hybrid contribution -0.106 0.535 -0.025 0.546
sum -0.944 3.133 4.384 5.470
Atomic orbital electron populations
1.69817 1.08486 1.30153 1.36553 1.26312 0.95315 1.03387 0.92671
0.85345 0.78697 0.76710 0.79521 1.19046 1.19915 1.19033 1.18783
0.98849 0.90997 1.41701 0.90162 1.17356 1.01527 0.92120 0.97698
1.20592 0.97533 0.77634 0.94110 1.47355 1.36661 1.08234 1.35327
1.16799 0.84209 0.81798 0.82705 1.90775 1.59191 1.33120 1.67929
1.69222 1.19233 1.29656 1.22615 1.21788 0.83690 0.88754 0.83176
1.84945 1.51939 1.37583 1.48178 1.23211 0.93612 0.97575 0.91217
1.24680 0.93431 0.90894 0.94842 1.87131 1.53171 1.27479 1.48840
0.90660 0.72260 0.87949 0.86857 0.86378 0.84909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -40.80 10.95 21.80 0.24 -40.56 15
2 C 0.04 1.78 4.80 85.17 0.41 2.19 15
3 Si 0.97 37.56 29.61 68.60 2.03 39.59 15
4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15
5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15
6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15
7 C -0.47 -24.12 8.73 23.31 0.20 -23.91 15
8 H 0.08 4.02 7.92 -2.91 -0.02 4.00 15
9 C -0.08 -4.02 5.63 -19.61 -0.11 -4.13 15
10 C 0.26 12.37 6.94 84.95 0.59 12.96 15
11 N -0.54 -24.62 3.09 -763.04 -2.36 -26.98 15
12 C 0.64 32.96 8.45 179.66 1.52 34.48 15
13 O -0.63 -34.49 17.66 -5.05 -0.09 -34.58 15
14 N -0.65 -32.06 10.36 -434.34 -4.50 -36.56 15
15 C 0.42 19.91 8.09 86.78 0.70 20.62 15
16 O -0.43 -16.80 13.17 -83.78 -1.10 -17.90 15
17 C 0.07 2.11 7.50 86.51 0.65 2.76 15
18 C 0.04 1.02 8.23 72.28 0.59 1.62 15
19 O -0.26 -11.16 8.60 -77.47 -0.67 -11.82 15
20 H 0.28 12.97 8.30 -92.71 -0.77 12.20 15
21 H 0.42 11.69 8.99 -74.06 -0.67 11.02 15
22 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15
23 H 0.11 3.13 8.14 -2.39 -0.02 3.11 15
24 H 0.12 2.78 8.14 -2.38 -0.02 2.76 15
25 H 0.13 2.71 8.14 -2.39 -0.02 2.69 15
Total: -1.00 -70.23 230.89 -1.31 -71.54
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: 0.58 Total: 10.70 kcal
Atomic # 6 Polarization: 42.02 SS G_CDS: 4.55 Total: 46.57 kcal
Atomic # 7 Polarization: -97.48 SS G_CDS: -6.62 Total: -104.10 kcal
Atomic # 8 Polarization: -62.44 SS G_CDS: -1.86 Total: -64.30 kcal
Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal
Total: -70.23 -1.31 -71.54 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261301964.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.957 kcal
(2) G-P(sol) polarization free energy of solvation -70.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds