Wall clock time and date at job start Mon Mar 30 2020 02:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00381 * 2 1 4 4 H 1.48503 * 109.47272 * 270.00704 * 3 2 1 5 5 H 1.48501 * 109.46742 * 30.00435 * 3 2 1 6 6 H 1.48500 * 109.47016 * 150.00128 * 3 2 1 7 7 C 1.37882 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00322 * 0.27004 * 7 2 1 9 9 C 1.50696 * 119.99908 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.37916 * 120.07820 * 100.75410 * 10 9 7 12 12 C 1.38360 * 120.18879 * 179.70195 * 11 10 9 13 13 C 1.38536 * 120.33509 * 0.60165 * 12 11 10 14 14 Cl 1.73602 * 119.92938 * 179.70332 * 13 12 11 15 15 C 1.37992 * 120.14557 * 359.67936 * 13 12 11 16 16 C 1.39836 * 120.07228 * 281.03394 * 10 9 7 17 17 C 1.47164 * 120.16603 * 0.02562 * 16 10 9 18 18 O 1.21249 * 120.00339 * 5.30560 * 17 16 10 19 19 H 0.97005 * 120.00165 * 359.97438 * 1 2 3 20 20 H 1.09009 * 109.47474 * 299.99548 * 9 7 2 21 21 H 1.09004 * 109.47757 * 59.99452 * 9 7 2 22 22 H 1.07994 * 119.90411 * 0.02562 * 11 10 9 23 23 H 1.07998 * 119.83090 * 180.28222 * 12 11 10 24 24 H 1.08001 * 120.09730 * 180.02562 * 15 13 12 25 25 H 1.08001 * 120.00177 * 185.30715 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5114 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.4536 -3.1927 -1.1735 12 6 4.9211 -4.4949 -1.1749 13 6 4.9396 -5.2329 -0.0026 14 17 5.5212 -6.8685 -0.0179 15 6 4.4973 -4.6705 1.1774 16 6 4.0294 -3.3525 1.1869 17 6 3.5553 -2.7452 2.4408 18 8 3.0608 -1.6382 2.4292 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6802 -0.8912 21 1 3.8752 -0.6805 0.8888 22 1 4.4381 -2.6252 -2.0922 23 1 5.2684 -4.9400 -2.0955 24 1 4.5125 -5.2464 2.0909 25 1 3.6478 -3.2855 3.3713 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306671173.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:33 Heat of formation + Delta-G solvation = -15.719812 kcal Electronic energy + Delta-G solvation = -12729.898845 eV Core-core repulsion = 10313.595247 eV Total energy + Delta-G solvation = -2416.303598 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.54953 -37.57740 -36.22998 -33.30222 -31.38236 -31.11825 -27.72437 -24.40046 -22.89044 -21.36785 -19.94630 -16.79060 -16.75496 -15.86001 -15.17776 -14.29666 -14.17327 -13.72690 -13.62196 -13.16479 -12.83502 -12.38717 -11.86878 -11.75740 -11.34961 -11.10933 -10.83848 -10.54818 -10.15837 -9.98188 -9.37081 -8.77246 -8.71457 -8.46917 -8.05318 -6.00010 -3.95546 1.08032 1.57413 2.28791 2.99067 3.33651 3.41528 3.46400 4.12815 4.49781 4.71017 5.01790 5.17858 5.35893 5.52608 5.60999 5.90010 5.95074 6.14901 6.37375 6.61653 6.67618 6.96950 7.15418 7.39699 7.75002 8.17373 8.51617 9.00603 9.61129 11.13442 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.047789 B = 0.007615 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.765732 B = 3676.255878 C = 3893.357134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.486 4.486 8 H 0.068 0.932 9 C 0.007 3.993 10 C 0.028 3.972 11 C -0.127 4.127 12 C -0.084 4.084 13 C -0.071 4.071 14 Cl -0.087 7.087 15 C -0.066 4.066 16 C -0.176 4.176 17 C 0.352 3.648 18 O -0.396 6.396 19 H 0.263 0.737 20 H 0.018 0.982 21 H 0.055 0.945 22 H 0.134 0.866 23 H 0.128 0.872 24 H 0.133 0.867 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 -9.577 1.137 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.524 4.524 8 H 0.086 0.914 9 C -0.029 4.029 10 C 0.028 3.972 11 C -0.145 4.145 12 C -0.103 4.103 13 C -0.097 4.097 14 Cl -0.059 7.059 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.207 3.793 18 O -0.264 6.264 19 H 0.072 0.928 20 H 0.036 0.964 21 H 0.072 0.928 22 H 0.151 0.849 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.986 -8.980 1.136 14.234 hybrid contribution 0.395 0.426 -0.115 0.593 sum 11.381 -8.553 1.021 14.273 Atomic orbital electron populations 1.69884 1.06243 1.26805 1.51280 1.24861 0.94611 0.98835 0.94471 0.86798 0.80644 0.83849 0.78125 1.20515 1.21364 1.18939 1.20572 0.87309 0.94381 1.50135 0.91376 1.19101 0.98156 0.87666 0.98016 1.20798 0.87527 0.98038 0.90841 1.21109 1.00236 0.94395 0.98765 1.21166 0.98309 0.94207 0.96597 1.20606 1.06899 0.86424 0.95795 1.98332 1.87744 1.20888 1.98925 1.21122 0.96321 0.94258 0.96822 1.20826 1.05088 0.94414 0.97437 1.23694 0.76718 0.87974 0.90912 1.90710 1.28072 1.19379 1.88279 0.92753 0.96354 0.92763 0.84851 0.85375 0.84897 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 15 2 C 0.07 2.15 5.47 -17.82 -0.10 2.06 15 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 15 7 C -0.49 -13.81 8.06 -34.44 -0.28 -14.09 15 8 H 0.07 2.12 7.98 -52.49 -0.42 1.71 15 9 C 0.01 0.17 3.47 -29.04 -0.10 0.07 15 10 C 0.03 0.57 5.12 -104.14 -0.53 0.04 15 11 C -0.13 -2.17 9.65 -39.65 -0.38 -2.55 15 12 C -0.08 -1.23 9.82 -39.43 -0.39 -1.62 15 13 C -0.07 -1.02 6.31 -39.56 -0.25 -1.27 15 14 Cl -0.09 -1.09 28.95 -51.86 -1.50 -2.59 15 15 C -0.07 -0.97 9.58 -39.06 -0.37 -1.34 15 16 C -0.18 -3.13 5.86 -105.07 -0.62 -3.75 15 17 C 0.35 6.23 11.38 34.35 0.39 6.63 15 18 O -0.40 -9.08 13.04 5.58 0.07 -9.01 15 19 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 20 H 0.02 0.42 7.42 -51.92 -0.39 0.04 15 21 H 0.05 1.35 5.23 -51.93 -0.27 1.08 15 22 H 0.13 2.10 8.03 -52.49 -0.42 1.68 15 23 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.09 1.11 8.06 -52.49 -0.42 0.69 15 LS Contribution 240.04 15.07 3.62 3.62 Total: -1.00 -32.04 240.04 -6.27 -38.31 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -1.93 Total: -4.58 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.63 Total: -15.83 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.04 -6.27 -38.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306671173.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.590 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds