Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00566 * 2 1 4 4 H 1.48498 * 109.46865 * 270.00187 * 3 2 1 5 5 H 1.48506 * 109.46797 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47368 * 149.99954 * 3 2 1 7 7 C 1.37885 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00055 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.38326 * 119.95540 * 270.29213 * 10 9 7 12 12 C 1.38283 * 120.15608 * 180.25425 * 11 10 9 13 13 C 1.38106 * 120.08100 * 359.44558 * 12 11 10 14 14 C 1.50694 * 120.04144 * 180.29687 * 13 12 11 15 15 O 1.42905 * 109.47200 * 0.02562 * 14 13 12 16 16 C 1.38956 * 119.92016 * 0.28032 * 13 12 11 17 17 S 1.76195 * 120.08370 * 179.97438 * 16 13 12 18 18 C 1.38057 * 119.96167 * 89.99345 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47316 * 59.99638 * 9 7 2 21 21 H 1.08999 * 109.46611 * 299.99221 * 9 7 2 22 22 H 1.07998 * 119.92334 * 359.97438 * 11 10 9 23 23 H 1.08002 * 119.96168 * 179.72725 * 12 11 10 24 24 H 1.09000 * 109.47521 * 120.00204 * 14 13 12 25 25 H 1.08997 * 109.47294 * 240.00219 * 14 13 12 26 26 H 0.96701 * 114.00052 * 179.97438 * 15 14 13 27 27 H 1.34500 * 102.99980 * 89.99611 * 17 16 13 28 28 H 1.08009 * 120.03954 * 0.04335 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 -0.0001 11 6 4.2378 -3.2686 1.1983 12 6 4.7036 -4.5705 1.2031 13 6 4.9361 -5.2269 0.0104 14 6 5.4374 -6.6481 0.0167 15 8 5.5925 -7.0925 1.3660 16 6 4.7068 -4.5755 -1.1954 17 16 5.0025 -5.4086 -2.7195 18 6 4.2439 -3.2649 -1.1962 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6809 0.8904 21 1 3.8751 -0.6798 -0.8895 22 1 4.0527 -2.7592 2.1325 23 1 4.8816 -5.0763 2.1406 24 1 4.7200 -7.2887 -0.4963 25 1 6.3986 -6.6965 -0.4950 26 1 5.9126 -8.0015 1.4463 27 1 3.8177 -5.9885 -2.9822 28 1 4.0649 -2.7553 -2.1316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306709976.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = -32.170307 kcal Electronic energy + Delta-G solvation = -12698.711576 eV Core-core repulsion = 10419.571432 eV Total energy + Delta-G solvation = -2279.140144 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08797 -36.68165 -33.58052 -31.83953 -30.55696 -28.69284 -25.30560 -22.55326 -22.25926 -20.28255 -17.53730 -17.23563 -16.82577 -15.90062 -15.04248 -14.66196 -14.62214 -14.17831 -13.38281 -13.29535 -12.53304 -12.45193 -11.79813 -11.74849 -11.35831 -11.13637 -10.68083 -10.36366 -10.27787 -10.02688 -9.94979 -9.44097 -8.63563 -8.46581 -8.01976 -7.90128 -6.12570 -4.12652 1.29585 1.86346 1.96412 2.97995 3.25997 3.33943 3.36305 4.17291 4.18922 4.37229 5.07748 5.19520 5.32916 5.42655 5.50985 5.69570 5.92165 6.00782 6.18878 6.46521 6.72144 6.80749 6.86953 6.94133 7.36733 7.44342 7.59208 7.63245 8.42835 8.91410 9.47161 11.00278 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.037484 B = 0.006949 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.802888 B = 4028.179743 C = 4398.873639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.014 3.986 10 C -0.036 4.036 11 C -0.095 4.095 12 C -0.104 4.104 13 C -0.077 4.077 14 C 0.124 3.876 15 O -0.571 6.571 16 C -0.106 4.106 17 S -0.147 6.147 18 C -0.072 4.072 19 H 0.265 0.735 20 H 0.031 0.969 21 H 0.026 0.974 22 H 0.126 0.874 23 H 0.131 0.869 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.379 0.621 27 H 0.074 0.926 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -11.120 -0.757 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.023 4.023 10 C -0.037 4.037 11 C -0.113 4.113 12 C -0.124 4.124 13 C -0.079 4.079 14 C 0.047 3.953 15 O -0.376 6.376 16 C -0.218 4.218 17 S 0.011 5.989 18 C -0.092 4.092 19 H 0.075 0.925 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.144 0.856 23 H 0.149 0.851 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.039 0.961 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.489 -10.759 -1.452 15.807 hybrid contribution -0.792 0.406 0.527 1.035 sum 10.697 -10.353 -0.925 14.915 Atomic orbital electron populations 1.69898 1.06305 1.27089 1.50399 1.25000 0.94750 0.99092 0.94332 0.86791 0.80404 0.83527 0.78733 1.20065 1.21198 1.18831 1.20908 0.88159 0.94682 1.51706 0.90938 1.18834 0.97513 0.88226 0.97716 1.20364 0.93273 0.98299 0.91810 1.21336 0.97128 0.94298 0.98534 1.20907 0.99422 0.94482 0.97564 1.19662 1.00722 0.94853 0.92711 1.20884 0.99676 0.91922 0.82827 1.86455 1.89961 1.34398 1.26796 1.20750 1.10417 0.97370 0.93235 1.85616 1.20115 1.65923 1.27261 1.21417 0.96261 0.92536 0.99023 0.92516 0.95066 0.95533 0.85595 0.85117 0.92784 0.91485 0.77446 0.96141 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 15 7 C -0.52 -14.51 9.65 -34.44 -0.33 -14.84 15 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.01 0.34 4.17 -29.03 -0.12 0.22 15 10 C -0.04 -0.74 5.07 -104.65 -0.53 -1.27 15 11 C -0.09 -1.80 9.70 -39.53 -0.38 -2.18 15 12 C -0.10 -1.78 9.37 -39.61 -0.37 -2.15 15 13 C -0.08 -1.25 5.90 -104.41 -0.62 -1.87 15 14 C 0.12 1.57 6.32 36.00 0.23 1.80 15 15 O -0.57 -6.68 12.14 -35.23 -0.43 -7.11 15 16 C -0.11 -1.82 6.11 -39.03 -0.24 -2.05 15 17 S -0.15 -2.10 24.67 -107.50 -2.65 -4.75 15 18 C -0.07 -1.39 9.45 -39.37 -0.37 -1.76 15 19 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 20 H 0.03 0.72 7.15 -51.93 -0.37 0.35 15 21 H 0.03 0.61 7.51 -51.93 -0.39 0.22 15 22 H 0.13 2.24 8.06 -52.49 -0.42 1.82 15 23 H 0.13 2.05 7.00 -52.49 -0.37 1.68 15 24 H 0.05 0.63 8.11 -51.93 -0.42 0.21 15 25 H 0.07 0.76 8.10 -51.93 -0.42 0.33 15 26 H 0.38 2.39 9.12 45.56 0.42 2.81 15 27 H 0.07 1.03 9.07 97.61 0.89 1.91 15 28 H 0.13 2.47 8.06 -52.48 -0.42 2.05 15 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -31.09 258.66 -7.01 -38.10 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -1.10 Total: 2.19 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.83 Total: -22.20 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.43 Total: -7.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.65 Total: -4.75 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.09 -7.01 -38.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709976.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.933 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds