Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00566 * 2 1 4 4 H 1.48498 * 109.46865 * 270.00187 * 3 2 1 5 5 H 1.48506 * 109.46797 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47368 * 149.99954 * 3 2 1 7 7 C 1.37885 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00055 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.38326 * 119.95540 * 270.29213 * 10 9 7 12 12 C 1.38283 * 120.15608 * 180.25425 * 11 10 9 13 13 C 1.38106 * 120.08100 * 359.44558 * 12 11 10 14 14 C 1.50694 * 120.04144 * 180.29687 * 13 12 11 15 15 O 1.42905 * 109.47200 * 0.02562 * 14 13 12 16 16 C 1.38956 * 119.92016 * 0.28032 * 13 12 11 17 17 S 1.76195 * 120.08370 * 179.97438 * 16 13 12 18 18 C 1.38057 * 119.96167 * 89.99345 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47316 * 59.99638 * 9 7 2 21 21 H 1.08999 * 109.46611 * 299.99221 * 9 7 2 22 22 H 1.07998 * 119.92334 * 359.97438 * 11 10 9 23 23 H 1.08002 * 119.96168 * 179.72725 * 12 11 10 24 24 H 1.09000 * 109.47521 * 120.00204 * 14 13 12 25 25 H 1.08997 * 109.47294 * 240.00219 * 14 13 12 26 26 H 0.96701 * 114.00052 * 179.97438 * 15 14 13 27 27 H 1.34500 * 102.99980 * 89.99611 * 17 16 13 28 28 H 1.08009 * 120.03954 * 0.04335 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 -0.0001 11 6 4.2378 -3.2686 1.1983 12 6 4.7036 -4.5705 1.2031 13 6 4.9361 -5.2269 0.0104 14 6 5.4374 -6.6481 0.0167 15 8 5.5925 -7.0925 1.3660 16 6 4.7068 -4.5755 -1.1954 17 16 5.0025 -5.4086 -2.7195 18 6 4.2439 -3.2649 -1.1962 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6809 0.8904 21 1 3.8751 -0.6798 -0.8895 22 1 4.0527 -2.7592 2.1325 23 1 4.8816 -5.0763 2.1406 24 1 4.7200 -7.2887 -0.4963 25 1 6.3986 -6.6965 -0.4950 26 1 5.9126 -8.0015 1.4463 27 1 3.8177 -5.9885 -2.9822 28 1 4.0649 -2.7553 -2.1316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306709976.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = -53.565237 kcal Electronic energy + Delta-G solvation = -12699.639330 eV Core-core repulsion = 10419.571432 eV Total energy + Delta-G solvation = -2280.067898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44468 -37.69471 -35.42911 -33.61540 -31.95500 -30.34275 -26.79460 -24.00989 -23.91734 -21.75032 -19.00609 -18.68614 -18.26210 -17.22554 -16.39740 -16.08831 -15.98143 -15.72817 -14.92908 -14.65826 -14.30435 -13.88813 -13.57715 -13.23638 -12.88039 -12.47997 -12.35120 -11.94424 -11.84432 -11.61264 -11.47232 -11.10828 -10.81048 -9.84961 -9.35922 -9.14716 -8.32487 -6.38449 -0.03819 0.43995 0.69231 1.36984 1.38409 1.50462 1.79209 2.34118 2.74992 3.02278 3.28356 3.87946 4.07571 4.14716 4.40285 4.47577 4.58342 4.64183 4.76983 4.98072 5.08177 5.16471 5.35922 5.45499 5.52926 5.82132 5.95486 6.22517 6.67401 6.96928 7.25455 8.84103 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.037484 B = 0.006949 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.802888 B = 4028.179743 C = 4398.873639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.523 4.523 8 H 0.025 0.975 9 C 0.021 3.979 10 C -0.069 4.069 11 C -0.104 4.104 12 C -0.106 4.106 13 C -0.073 4.073 14 C 0.129 3.871 15 O -0.585 6.585 16 C -0.118 4.118 17 S -0.113 6.113 18 C -0.085 4.085 19 H 0.268 0.732 20 H 0.037 0.963 21 H 0.033 0.967 22 H 0.129 0.871 23 H 0.147 0.853 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.403 0.597 27 H 0.079 0.921 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.626 -11.919 -0.944 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.561 4.561 8 H 0.043 0.957 9 C -0.016 4.016 10 C -0.071 4.071 11 C -0.122 4.122 12 C -0.125 4.125 13 C -0.076 4.076 14 C 0.051 3.949 15 O -0.395 6.395 16 C -0.229 4.229 17 S 0.044 5.956 18 C -0.105 4.105 19 H 0.077 0.923 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.147 0.853 23 H 0.165 0.835 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.254 0.746 27 H 0.043 0.957 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.640 -11.594 -1.632 17.976 hybrid contribution -1.470 0.460 0.572 1.643 sum 12.170 -11.134 -1.060 16.529 Atomic orbital electron populations 1.70058 1.08397 1.28374 1.52120 1.25998 0.95604 1.03481 0.93786 0.85632 0.79584 0.77902 0.79437 1.18948 1.20857 1.16620 1.21139 0.90781 0.92950 1.51203 0.95659 1.18674 0.94264 0.90644 0.98050 1.20222 0.95952 0.97528 0.93354 1.21449 0.97408 0.95314 0.98034 1.21095 0.98928 0.93707 0.98799 1.20194 0.98647 0.96760 0.91979 1.20870 1.00768 0.89531 0.83710 1.86387 1.90287 1.36669 1.26120 1.20955 1.09680 0.96897 0.95407 1.85455 1.19839 1.65051 1.25275 1.21476 0.96926 0.93777 0.98361 0.92291 0.94491 0.94836 0.85321 0.83545 0.91403 0.89498 0.74562 0.95728 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 15 2 C 0.01 0.49 5.47 84.66 0.46 0.96 15 3 Si 0.95 43.59 27.47 68.60 1.88 45.47 15 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 15 7 C -0.52 -30.36 9.65 25.60 0.25 -30.11 15 8 H 0.03 1.65 7.98 -2.91 -0.02 1.62 15 9 C 0.02 1.00 4.17 29.10 0.12 1.12 15 10 C -0.07 -2.90 5.07 -19.88 -0.10 -3.00 15 11 C -0.10 -3.94 9.70 22.30 0.22 -3.72 15 12 C -0.11 -3.48 9.37 22.25 0.21 -3.27 15 13 C -0.07 -2.23 5.90 -19.73 -0.12 -2.35 15 14 C 0.13 2.80 6.32 71.23 0.45 3.25 15 15 O -0.59 -11.69 12.14 -148.98 -1.81 -13.50 15 16 C -0.12 -3.87 6.11 22.62 0.14 -3.73 15 17 S -0.11 -2.98 24.67 -56.49 -1.39 -4.37 15 18 C -0.08 -3.28 9.45 22.41 0.21 -3.06 15 19 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 20 H 0.04 1.68 7.15 -2.39 -0.02 1.67 15 21 H 0.03 1.52 7.51 -2.39 -0.02 1.50 15 22 H 0.13 4.63 8.06 -2.91 -0.02 4.61 15 23 H 0.15 4.31 7.00 -2.91 -0.02 4.29 15 24 H 0.07 1.33 8.11 -2.39 -0.02 1.31 15 25 H 0.09 1.60 8.10 -2.39 -0.02 1.58 15 26 H 0.40 3.57 9.12 -74.06 -0.68 2.89 15 27 H 0.08 1.99 9.07 73.35 0.67 2.65 15 28 H 0.13 4.87 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -68.22 258.66 1.94 -66.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.12 Total: 9.34 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 1.84 Total: -43.92 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.30 Total: -59.29 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.81 Total: -13.50 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -1.39 Total: -4.37 kcal Total: -68.22 1.94 -66.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306709976.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.711 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds