Wall clock time and date at job start Mon Mar 30 2020 03:14:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.36008 * 116.99763 * 2 1
4 4 C 1.39416 * 120.08264 * 270.20853 * 3 2 1
5 5 S 1.76202 * 120.09564 * 0.02562 * 4 3 2
6 6 C 1.38752 * 119.80848 * 180.27710 * 4 3 2
7 7 C 1.38237 * 119.97720 * 359.74864 * 6 4 3
8 8 C 1.38231 * 120.16516 * 0.02562 * 7 6 4
9 9 C 1.38351 * 120.18681 * 359.97438 * 8 7 6
10 10 C 1.50700 * 119.98419 * 179.97438 * 9 8 7
11 11 C 1.50702 * 109.46869 * 264.99786 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11
17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11
18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11
19 19 H 1.08995 * 109.47397 * 299.99715 * 1 2 3
20 20 H 1.09005 * 109.47432 * 60.00454 * 1 2 3
21 21 H 1.09005 * 109.46784 * 179.97438 * 1 2 3
22 22 H 1.34500 * 102.99842 * 270.25585 * 5 4 3
23 23 H 1.07998 * 120.01022 * 179.76605 * 6 4 3
24 24 H 1.07998 * 119.91921 * 179.97438 * 7 6 4
25 25 H 1.07997 * 119.90775 * 180.02562 * 8 7 6
26 26 H 1.09004 * 109.47210 * 145.00079 * 10 9 8
27 27 H 1.08994 * 109.47551 * 24.99731 * 10 9 8
28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2119 0.0000
4 6 2.3597 1.8365 -1.2064
5 16 1.9564 1.0586 -2.7350
6 6 2.9948 3.0702 -1.1998
7 6 3.3101 3.6783 0.0010
8 6 2.9948 3.0602 1.1965
9 6 2.3615 1.8301 1.1978
10 6 2.0204 1.1601 2.5039
11 6 3.1159 0.1935 2.8737
12 1 3.9736 0.0765 2.2279
13 6 3.0262 -0.5368 4.0398
14 7 1.9820 -0.3940 4.8265
15 14 4.3878 -1.7292 4.5021
16 1 5.6681 -0.9894 4.6398
17 1 4.0540 -2.3859 5.7915
18 1 4.5236 -2.7606 3.4424
19 1 -0.3634 0.5138 0.8899
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 3.0523 0.3251 -2.9997
23 1 3.2424 3.5552 -2.1324
24 1 3.8048 4.6383 0.0050
25 1 3.2427 3.5392 2.1321
26 1 1.0792 0.6201 2.4003
27 1 1.9226 1.9143 3.2846
28 1 1.9188 -0.9080 5.6467
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306815941.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:38
Heat of formation + Delta-G solvation = -15.458756 kcal
Electronic energy + Delta-G solvation = -13163.637128 eV
Core-core repulsion = 10885.221651 eV
Total energy + Delta-G solvation = -2278.415477 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.43244 -36.65410 -33.48901 -31.33095 -29.86961 -27.34426 -26.12848 -23.40207
-22.13391 -20.66958 -17.55961 -16.99168 -16.34324 -15.75909 -15.31098 -14.76779
-14.43111 -13.97130 -13.26608 -12.79816 -12.50203 -12.03541 -11.85655 -11.36554
-11.27282 -11.07486 -10.78228 -10.53758 -10.35587 -9.76386 -9.50767 -9.23802
-8.41697 -8.34457 -7.91862 -7.85876 -6.04370 -4.06599 1.28356 1.79030
2.06123 3.07729 3.32461 3.36083 3.40035 3.96341 4.41895 4.52345
5.25006 5.31847 5.49774 5.70255 5.81483 5.88902 5.91828 5.99013
6.15778 6.40065 6.63576 6.82542 6.88866 7.20041 7.49109 7.68238
7.90421 8.10103 8.30674 8.95550 9.56036 11.05935
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.031812 B = 0.008681 C = 0.007979
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.964369 B = 3224.570215 C = 3508.359785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 O -0.317 6.317
3 C 0.137 3.863
4 C -0.133 4.133
5 S -0.137 6.137
6 C -0.090 4.090
7 C -0.136 4.136
8 C -0.087 4.087
9 C -0.061 4.061
10 C 0.055 3.945
11 C -0.503 4.503
12 H 0.054 0.946
13 C 0.060 3.940
14 N -0.895 5.895
15 Si 0.895 3.105
16 H -0.277 1.277
17 H -0.286 1.286
18 H -0.276 1.276
19 H 0.046 0.954
20 H 0.043 0.957
21 H 0.089 0.911
22 H 0.072 0.928
23 H 0.127 0.873
24 H 0.123 0.877
25 H 0.128 0.872
26 H 0.034 0.966
27 H 0.029 0.971
28 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.022 5.527 -10.239 11.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 O -0.233 6.233
3 C 0.090 3.910
4 C -0.245 4.245
5 S 0.020 5.980
6 C -0.110 4.110
7 C -0.156 4.156
8 C -0.106 4.106
9 C -0.063 4.063
10 C 0.018 3.982
11 C -0.542 4.542
12 H 0.072 0.928
13 C -0.141 4.141
14 N -0.535 5.535
15 Si 0.723 3.277
16 H -0.202 1.202
17 H -0.212 1.212
18 H -0.202 1.202
19 H 0.065 0.935
20 H 0.062 0.938
21 H 0.107 0.893
22 H 0.036 0.964
23 H 0.144 0.856
24 H 0.141 0.859
25 H 0.146 0.854
26 H 0.053 0.947
27 H 0.047 0.953
28 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.441 4.965 -10.882 12.048
hybrid contribution 1.804 -0.672 1.081 2.208
sum 0.363 4.293 -9.801 10.706
Atomic orbital electron populations
1.22872 0.79120 1.02886 1.00132 1.86046 1.19488 1.23783 1.93959
1.18656 0.95843 0.85708 0.90791 1.21568 1.10151 0.98726 0.94065
1.85440 1.28232 1.59718 1.24568 1.21206 0.97842 0.93661 0.98318
1.21110 1.01924 1.00343 0.92237 1.21256 0.96501 0.94723 0.98089
1.21090 0.95109 0.92994 0.97088 1.18283 0.97923 0.95226 0.86752
1.20908 1.05113 1.22326 1.05820 0.92794 1.24952 0.95927 0.96977
0.96271 1.69937 1.28755 1.41673 1.13088 0.86604 0.82182 0.81289
0.77660 1.20240 1.21190 1.20180 0.93496 0.93842 0.89279 0.96369
0.85551 0.85936 0.85384 0.94744 0.95272 0.92814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.76 10.80 101.05 1.09 1.85 15
2 O -0.32 -6.74 9.06 -19.77 -0.18 -6.92 15
3 C 0.14 2.84 5.70 -39.07 -0.22 2.62 15
4 C -0.13 -2.38 6.12 -38.95 -0.24 -2.62 15
5 S -0.14 -2.15 25.26 -107.50 -2.72 -4.87 15
6 C -0.09 -1.40 9.79 -39.39 -0.39 -1.79 15
7 C -0.14 -2.10 10.04 -39.58 -0.40 -2.50 15
8 C -0.09 -1.61 9.68 -39.54 -0.38 -1.99 15
9 C -0.06 -1.32 5.08 -104.51 -0.53 -1.85 15
10 C 0.05 1.41 4.82 -29.03 -0.14 1.27 15
11 C -0.50 -14.22 9.09 -34.44 -0.31 -14.54 15
12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 15
13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15
14 N -0.90 -26.32 13.29 55.43 0.74 -25.58 15
15 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 15
16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15
17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15
18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15
19 H 0.05 0.82 7.17 -51.93 -0.37 0.45 15
20 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15
21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15
22 H 0.07 1.12 9.07 97.61 0.89 2.00 15
23 H 0.13 1.62 8.06 -52.49 -0.42 1.19 15
24 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15
25 H 0.13 2.20 8.06 -52.49 -0.42 1.78 15
26 H 0.03 0.93 6.42 -51.93 -0.33 0.59 15
27 H 0.03 0.77 8.05 -51.93 -0.42 0.35 15
28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15
LS Contribution 262.25 15.07 3.95 3.95
Total: -1.00 -30.15 262.25 -6.74 -36.89
By element:
Atomic # 1 Polarization: -0.44 SS G_CDS: -1.89 Total: -2.33 kcal
Atomic # 6 Polarization: -16.34 SS G_CDS: -1.62 Total: -17.95 kcal
Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal
Atomic # 8 Polarization: -6.74 SS G_CDS: -0.18 Total: -6.92 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal
Atomic # 16 Polarization: -2.15 SS G_CDS: -2.72 Total: -4.87 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -30.15 -6.74 -36.89 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306815941.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.431 kcal
(2) G-P(sol) polarization free energy of solvation -30.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.722 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds