Wall clock time and date at job start Mon Mar 30 2020 03:14:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.36008 * 116.99763 * 2 1
4 4 C 1.39416 * 120.08264 * 270.20853 * 3 2 1
5 5 S 1.76202 * 120.09564 * 0.02562 * 4 3 2
6 6 C 1.38752 * 119.80848 * 180.27710 * 4 3 2
7 7 C 1.38237 * 119.97720 * 359.74864 * 6 4 3
8 8 C 1.38231 * 120.16516 * 0.02562 * 7 6 4
9 9 C 1.38351 * 120.18681 * 359.97438 * 8 7 6
10 10 C 1.50700 * 119.98419 * 179.97438 * 9 8 7
11 11 C 1.50702 * 109.46869 * 264.99786 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11
17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11
18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11
19 19 H 1.08995 * 109.47397 * 299.99715 * 1 2 3
20 20 H 1.09005 * 109.47432 * 60.00454 * 1 2 3
21 21 H 1.09005 * 109.46784 * 179.97438 * 1 2 3
22 22 H 1.34500 * 102.99842 * 270.25585 * 5 4 3
23 23 H 1.07998 * 120.01022 * 179.76605 * 6 4 3
24 24 H 1.07998 * 119.91921 * 179.97438 * 7 6 4
25 25 H 1.07997 * 119.90775 * 180.02562 * 8 7 6
26 26 H 1.09004 * 109.47210 * 145.00079 * 10 9 8
27 27 H 1.08994 * 109.47551 * 24.99731 * 10 9 8
28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2119 0.0000
4 6 2.3597 1.8365 -1.2064
5 16 1.9564 1.0586 -2.7350
6 6 2.9948 3.0702 -1.1998
7 6 3.3101 3.6783 0.0010
8 6 2.9948 3.0602 1.1965
9 6 2.3615 1.8301 1.1978
10 6 2.0204 1.1601 2.5039
11 6 3.1159 0.1935 2.8737
12 1 3.9736 0.0765 2.2279
13 6 3.0262 -0.5368 4.0398
14 7 1.9820 -0.3940 4.8265
15 14 4.3878 -1.7292 4.5021
16 1 5.6681 -0.9894 4.6398
17 1 4.0540 -2.3859 5.7915
18 1 4.5236 -2.7606 3.4424
19 1 -0.3634 0.5138 0.8899
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 3.0523 0.3251 -2.9997
23 1 3.2424 3.5552 -2.1324
24 1 3.8048 4.6383 0.0050
25 1 3.2427 3.5392 2.1321
26 1 1.0792 0.6201 2.4003
27 1 1.9226 1.9143 3.2846
28 1 1.9188 -0.9080 5.6467
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306815941.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:38
Heat of formation + Delta-G solvation = -33.451606 kcal
Electronic energy + Delta-G solvation = -13164.417356 eV
Core-core repulsion = 10885.221651 eV
Total energy + Delta-G solvation = -2279.195706 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.89524 -38.09936 -35.48832 -33.11078 -31.26511 -29.12249 -27.63200 -25.29260
-23.57347 -22.22457 -18.94723 -18.52289 -18.32424 -17.23689 -16.83205 -16.42884
-16.06561 -15.31090 -14.70524 -14.46384 -14.30230 -13.53803 -13.49484 -13.18660
-12.75651 -12.66779 -12.64177 -12.33315 -11.81020 -11.57807 -11.51466 -10.77571
-10.58060 -9.73737 -9.43767 -9.07915 -8.20789 -6.31557 -0.07597 0.39260
0.75151 1.36661 1.39372 1.47330 1.81473 2.37773 2.60280 3.05586
3.10808 3.96727 4.16789 4.40324 4.45319 4.50507 4.54830 4.60635
4.79210 4.93943 5.19452 5.28515 5.34738 5.45855 5.72771 5.83888
5.84582 6.16296 6.64403 6.77480 7.35142 8.88739
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.031812 B = 0.008681 C = 0.007979
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.964369 B = 3224.570215 C = 3508.359785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.043 3.957
2 O -0.345 6.345
3 C 0.117 3.883
4 C -0.148 4.148
5 S -0.112 6.112
6 C -0.073 4.073
7 C -0.121 4.121
8 C -0.094 4.094
9 C -0.099 4.099
10 C 0.067 3.933
11 C -0.520 4.520
12 H 0.044 0.956
13 C 0.009 3.991
14 N -0.927 5.927
15 Si 0.959 3.041
16 H -0.266 1.266
17 H -0.277 1.277
18 H -0.275 1.275
19 H 0.031 0.969
20 H 0.064 0.936
21 H 0.105 0.895
22 H 0.073 0.927
23 H 0.166 0.834
24 H 0.168 0.832
25 H 0.132 0.868
26 H 0.008 0.992
27 H 0.008 0.992
28 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.246 6.412 -11.933 13.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 O -0.262 6.262
3 C 0.070 3.930
4 C -0.260 4.260
5 S 0.045 5.955
6 C -0.094 4.094
7 C -0.140 4.140
8 C -0.112 4.112
9 C -0.101 4.101
10 C 0.030 3.970
11 C -0.558 4.558
12 H 0.062 0.938
13 C -0.189 4.189
14 N -0.567 5.567
15 Si 0.784 3.216
16 H -0.191 1.191
17 H -0.202 1.202
18 H -0.200 1.200
19 H 0.050 0.950
20 H 0.082 0.918
21 H 0.124 0.876
22 H 0.037 0.963
23 H 0.183 0.817
24 H 0.185 0.815
25 H 0.150 0.850
26 H 0.026 0.974
27 H 0.026 0.974
28 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -0.176 5.862 -12.581 13.881
hybrid contribution 1.374 -0.893 1.530 2.242
sum 1.198 4.968 -11.051 12.176
Atomic orbital electron populations
1.23009 0.77663 1.04096 1.00321 1.85980 1.21215 1.24847 1.94181
1.18835 0.96681 0.85847 0.91623 1.21785 1.10345 0.99732 0.94146
1.85309 1.28350 1.59672 1.22214 1.21729 0.95272 0.92341 1.00019
1.21524 1.00369 1.01439 0.90666 1.21413 0.96161 0.93668 0.99954
1.20847 0.98603 0.95006 0.95666 1.17949 0.96144 0.94206 0.88723
1.21199 1.05527 1.23163 1.05913 0.93758 1.25799 0.98270 0.98664
0.96187 1.70050 1.30497 1.42675 1.13523 0.85590 0.79512 0.78990
0.77502 1.19132 1.20225 1.20045 0.95042 0.91784 0.87635 0.96298
0.81662 0.81454 0.84973 0.97380 0.97419 0.92582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.50 10.80 113.37 1.22 2.72 15
2 O -0.35 -14.99 9.06 -93.64 -0.85 -15.84 15
3 C 0.12 4.85 5.70 22.60 0.13 4.98 15
4 C -0.15 -5.01 6.12 22.68 0.14 -4.88 15
5 S -0.11 -3.27 25.26 -56.49 -1.43 -4.70 15
6 C -0.07 -2.01 9.79 22.39 0.22 -1.79 15
7 C -0.12 -3.29 10.04 22.27 0.22 -3.06 15
8 C -0.09 -3.38 9.68 22.29 0.22 -3.16 15
9 C -0.10 -4.40 5.08 -19.79 -0.10 -4.50 15
10 C 0.07 3.59 4.82 29.10 0.14 3.73 15
11 C -0.52 -30.34 9.09 25.60 0.23 -30.10 15
12 H 0.04 2.60 7.74 -2.91 -0.02 2.58 15
13 C 0.01 0.52 5.46 84.66 0.46 0.98 15
14 N -0.93 -56.01 13.29 21.45 0.28 -55.72 15
15 Si 0.96 45.21 29.54 68.60 2.03 47.23 15
16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15
17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15
18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15
19 H 0.03 1.16 7.17 -2.39 -0.02 1.15 15
20 H 0.06 1.92 8.14 -2.38 -0.02 1.90 15
21 H 0.11 3.21 8.14 -2.38 -0.02 3.19 15
22 H 0.07 2.09 9.07 73.35 0.67 2.75 15
23 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15
24 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15
25 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15
26 H 0.01 0.46 6.42 -2.38 -0.02 0.45 15
27 H 0.01 0.42 8.05 -2.39 -0.02 0.40 15
28 H 0.27 15.06 8.31 -92.70 -0.77 14.29 15
Total: -1.00 -66.63 262.25 4.75 -61.87
By element:
Atomic # 1 Polarization: 0.40 SS G_CDS: 1.83 Total: 2.24 kcal
Atomic # 6 Polarization: -37.96 SS G_CDS: 2.88 Total: -35.08 kcal
Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.72 kcal
Atomic # 8 Polarization: -14.99 SS G_CDS: -0.85 Total: -15.84 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal
Atomic # 16 Polarization: -3.27 SS G_CDS: -1.43 Total: -4.70 kcal
Total: -66.63 4.75 -61.87 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306815941.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal
(2) G-P(sol) polarization free energy of solvation -66.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds