Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 116.99763 * 2 1 4 4 C 1.39416 * 120.08264 * 270.20853 * 3 2 1 5 5 S 1.76202 * 120.09564 * 0.02562 * 4 3 2 6 6 C 1.38752 * 119.80848 * 180.27710 * 4 3 2 7 7 C 1.38237 * 119.97720 * 359.74864 * 6 4 3 8 8 C 1.38231 * 120.16516 * 0.02562 * 7 6 4 9 9 C 1.38351 * 120.18681 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.98419 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46869 * 264.99786 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.08995 * 109.47397 * 299.99715 * 1 2 3 20 20 H 1.09005 * 109.47432 * 60.00454 * 1 2 3 21 21 H 1.09005 * 109.46784 * 179.97438 * 1 2 3 22 22 H 1.34500 * 102.99842 * 270.25585 * 5 4 3 23 23 H 1.07998 * 120.01022 * 179.76605 * 6 4 3 24 24 H 1.07998 * 119.91921 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.90775 * 180.02562 * 8 7 6 26 26 H 1.09004 * 109.47210 * 145.00079 * 10 9 8 27 27 H 1.08994 * 109.47551 * 24.99731 * 10 9 8 28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3597 1.8365 -1.2064 5 16 1.9564 1.0586 -2.7350 6 6 2.9948 3.0702 -1.1998 7 6 3.3101 3.6783 0.0010 8 6 2.9948 3.0602 1.1965 9 6 2.3615 1.8301 1.1978 10 6 2.0204 1.1601 2.5039 11 6 3.1159 0.1935 2.8737 12 1 3.9736 0.0765 2.2279 13 6 3.0262 -0.5368 4.0398 14 7 1.9820 -0.3940 4.8265 15 14 4.3878 -1.7292 4.5021 16 1 5.6681 -0.9894 4.6398 17 1 4.0540 -2.3859 5.7915 18 1 4.5236 -2.7606 3.4424 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.0523 0.3251 -2.9997 23 1 3.2424 3.5552 -2.1324 24 1 3.8048 4.6383 0.0050 25 1 3.2427 3.5392 2.1321 26 1 1.0792 0.6201 2.4003 27 1 1.9226 1.9143 3.2846 28 1 1.9188 -0.9080 5.6467 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306815941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = -33.451606 kcal Electronic energy + Delta-G solvation = -13164.417356 eV Core-core repulsion = 10885.221651 eV Total energy + Delta-G solvation = -2279.195706 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89524 -38.09936 -35.48832 -33.11078 -31.26511 -29.12249 -27.63200 -25.29260 -23.57347 -22.22457 -18.94723 -18.52289 -18.32424 -17.23689 -16.83205 -16.42884 -16.06561 -15.31090 -14.70524 -14.46384 -14.30230 -13.53803 -13.49484 -13.18660 -12.75651 -12.66779 -12.64177 -12.33315 -11.81020 -11.57807 -11.51466 -10.77571 -10.58060 -9.73737 -9.43767 -9.07915 -8.20789 -6.31557 -0.07597 0.39260 0.75151 1.36661 1.39372 1.47330 1.81473 2.37773 2.60280 3.05586 3.10808 3.96727 4.16789 4.40324 4.45319 4.50507 4.54830 4.60635 4.79210 4.93943 5.19452 5.28515 5.34738 5.45855 5.72771 5.83888 5.84582 6.16296 6.64403 6.77480 7.35142 8.88739 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.008681 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.964369 B = 3224.570215 C = 3508.359785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.345 6.345 3 C 0.117 3.883 4 C -0.148 4.148 5 S -0.112 6.112 6 C -0.073 4.073 7 C -0.121 4.121 8 C -0.094 4.094 9 C -0.099 4.099 10 C 0.067 3.933 11 C -0.520 4.520 12 H 0.044 0.956 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.959 3.041 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.275 1.275 19 H 0.031 0.969 20 H 0.064 0.936 21 H 0.105 0.895 22 H 0.073 0.927 23 H 0.166 0.834 24 H 0.168 0.832 25 H 0.132 0.868 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 6.412 -11.933 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.262 6.262 3 C 0.070 3.930 4 C -0.260 4.260 5 S 0.045 5.955 6 C -0.094 4.094 7 C -0.140 4.140 8 C -0.112 4.112 9 C -0.101 4.101 10 C 0.030 3.970 11 C -0.558 4.558 12 H 0.062 0.938 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.784 3.216 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.200 1.200 19 H 0.050 0.950 20 H 0.082 0.918 21 H 0.124 0.876 22 H 0.037 0.963 23 H 0.183 0.817 24 H 0.185 0.815 25 H 0.150 0.850 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.176 5.862 -12.581 13.881 hybrid contribution 1.374 -0.893 1.530 2.242 sum 1.198 4.968 -11.051 12.176 Atomic orbital electron populations 1.23009 0.77663 1.04096 1.00321 1.85980 1.21215 1.24847 1.94181 1.18835 0.96681 0.85847 0.91623 1.21785 1.10345 0.99732 0.94146 1.85309 1.28350 1.59672 1.22214 1.21729 0.95272 0.92341 1.00019 1.21524 1.00369 1.01439 0.90666 1.21413 0.96161 0.93668 0.99954 1.20847 0.98603 0.95006 0.95666 1.17949 0.96144 0.94206 0.88723 1.21199 1.05527 1.23163 1.05913 0.93758 1.25799 0.98270 0.98664 0.96187 1.70050 1.30497 1.42675 1.13523 0.85590 0.79512 0.78990 0.77502 1.19132 1.20225 1.20045 0.95042 0.91784 0.87635 0.96298 0.81662 0.81454 0.84973 0.97380 0.97419 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 10.80 113.37 1.22 2.72 15 2 O -0.35 -14.99 9.06 -93.64 -0.85 -15.84 15 3 C 0.12 4.85 5.70 22.60 0.13 4.98 15 4 C -0.15 -5.01 6.12 22.68 0.14 -4.88 15 5 S -0.11 -3.27 25.26 -56.49 -1.43 -4.70 15 6 C -0.07 -2.01 9.79 22.39 0.22 -1.79 15 7 C -0.12 -3.29 10.04 22.27 0.22 -3.06 15 8 C -0.09 -3.38 9.68 22.29 0.22 -3.16 15 9 C -0.10 -4.40 5.08 -19.79 -0.10 -4.50 15 10 C 0.07 3.59 4.82 29.10 0.14 3.73 15 11 C -0.52 -30.34 9.09 25.60 0.23 -30.10 15 12 H 0.04 2.60 7.74 -2.91 -0.02 2.58 15 13 C 0.01 0.52 5.46 84.66 0.46 0.98 15 14 N -0.93 -56.01 13.29 21.45 0.28 -55.72 15 15 Si 0.96 45.21 29.54 68.60 2.03 47.23 15 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 19 H 0.03 1.16 7.17 -2.39 -0.02 1.15 15 20 H 0.06 1.92 8.14 -2.38 -0.02 1.90 15 21 H 0.11 3.21 8.14 -2.38 -0.02 3.19 15 22 H 0.07 2.09 9.07 73.35 0.67 2.75 15 23 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15 24 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 25 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.01 0.46 6.42 -2.38 -0.02 0.45 15 27 H 0.01 0.42 8.05 -2.39 -0.02 0.40 15 28 H 0.27 15.06 8.31 -92.70 -0.77 14.29 15 Total: -1.00 -66.63 262.25 4.75 -61.87 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.83 Total: 2.24 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 2.88 Total: -35.08 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.85 Total: -15.84 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -1.43 Total: -4.70 kcal Total: -66.63 4.75 -61.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306815941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds