Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 116.99662 * 2 1 4 4 C 1.38484 * 120.08750 * 0.02562 * 3 2 1 5 5 C 1.38295 * 120.02632 * 179.70472 * 4 3 2 6 6 C 1.38272 * 120.19009 * 0.54909 * 5 4 3 7 7 C 1.50700 * 119.91559 * 179.72773 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72303 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38201 * 120.16474 * 359.45078 * 6 5 4 17 17 C 1.38790 * 119.97272 * 0.27167 * 16 6 5 18 18 S 1.76202 * 120.09328 * 179.97438 * 17 16 6 19 19 H 1.09000 * 109.46858 * 299.99421 * 1 2 3 20 20 H 1.08996 * 109.47307 * 59.99646 * 1 2 3 21 21 H 1.09006 * 109.46611 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.98240 * 0.02562 * 4 3 2 23 23 H 1.08007 * 119.90497 * 180.27268 * 5 4 3 24 24 H 1.09004 * 109.47210 * 149.72596 * 7 6 5 25 25 H 1.08994 * 109.47551 * 29.72248 * 7 6 5 26 26 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 27 27 H 1.08000 * 120.00895 * 180.25328 * 16 6 5 28 28 H 1.34502 * 102.99420 * 90.00423 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9230 3.6060 0.0067 6 6 3.3036 3.6816 0.0009 7 6 3.9826 5.0269 0.0015 8 6 4.2089 5.4760 -1.4192 9 1 3.8923 4.8500 -2.2404 10 6 4.8146 6.6889 -1.6707 11 7 5.1998 7.4513 -0.6707 12 14 5.0881 7.2489 -3.4316 13 1 4.5683 6.2178 -4.3653 14 1 4.3720 8.5296 -3.6606 15 1 6.5409 7.4448 -3.6688 16 6 4.0623 2.5265 0.0004 17 6 3.4381 1.2869 -0.0001 18 16 4.4024 -0.1879 -0.0014 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.2153 2.3191 0.0014 23 1 1.3341 4.5114 0.0116 24 1 4.9409 4.9500 0.5152 25 1 3.3520 5.7521 0.5156 26 1 5.6262 8.3044 -0.8477 27 1 5.1406 2.5885 0.0000 28 1 4.5685 -0.4418 1.3089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306906277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -19.113056 kcal Electronic energy + Delta-G solvation = -12745.884824 eV Core-core repulsion = 10467.310884 eV Total energy + Delta-G solvation = -2278.573940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75131 -37.27830 -33.26267 -30.99061 -30.61971 -27.77866 -26.28862 -23.17675 -22.43307 -20.58469 -18.06303 -17.06671 -16.32549 -15.93676 -15.59385 -14.95998 -14.37684 -13.77645 -13.55263 -13.32748 -12.69596 -12.17510 -11.87873 -11.58571 -11.28658 -11.14480 -10.78029 -10.60195 -10.55891 -10.13568 -9.65928 -9.38198 -8.53399 -8.45380 -7.76750 -7.54852 -6.06895 -4.11125 1.39473 1.90202 2.11288 3.14860 3.28770 3.36750 3.42057 3.44965 4.19912 4.45624 5.04359 5.16836 5.18843 5.28332 5.43626 5.48833 5.82536 5.91817 6.03918 6.22803 6.58808 6.85046 6.99442 7.20024 7.47833 7.62994 7.72457 7.88786 8.27783 8.94456 9.53408 11.02657 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035633 B = 0.006856 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.589736 B = 4082.929326 C = 4393.698673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.138 3.862 4 C -0.214 4.214 5 C -0.058 4.058 6 C -0.074 4.074 7 C 0.052 3.948 8 C -0.513 4.513 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.039 4.039 17 C -0.141 4.141 18 S -0.123 6.123 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.096 0.904 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.137 0.863 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 -11.546 2.326 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.090 3.910 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.076 4.076 7 C 0.015 3.985 8 C -0.551 4.551 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.060 4.060 17 C -0.253 4.253 18 S 0.034 5.966 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.114 0.886 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.887 -12.363 2.138 14.312 hybrid contribution -0.613 1.319 0.084 1.457 sum -7.500 -11.043 2.222 13.533 Atomic orbital electron populations 1.23013 0.79237 1.03422 1.01208 1.86196 1.20475 1.26579 1.88700 1.18807 0.91351 0.84290 0.96570 1.21126 0.99421 0.92216 1.10696 1.21128 0.94803 0.96551 0.95140 1.20688 0.93209 0.97558 0.96165 1.18320 0.95579 0.86727 0.97895 1.21124 1.39103 1.03408 0.91494 0.92310 1.25012 0.95452 0.96542 0.97285 1.69966 1.40769 1.11890 1.30662 0.86481 0.77945 0.78591 0.84734 1.19589 1.20986 1.20882 1.21420 1.00429 0.89645 0.94475 1.20356 0.91727 0.95900 1.17331 1.85666 1.68831 1.31411 1.10673 0.93043 0.92715 0.88584 0.85726 0.85478 0.95190 0.95208 0.92867 0.84546 0.97487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 15 2 O -0.31 -4.65 9.87 -19.77 -0.20 -4.84 15 3 C 0.14 2.36 6.69 -39.07 -0.26 2.10 15 4 C -0.21 -3.47 9.04 -39.47 -0.36 -3.83 15 5 C -0.06 -1.07 9.69 -39.55 -0.38 -1.46 15 6 C -0.07 -1.56 5.07 -104.62 -0.53 -2.09 15 7 C 0.05 1.29 5.10 -29.03 -0.15 1.14 15 8 C -0.51 -14.08 9.09 -34.44 -0.31 -14.39 15 9 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 11 N -0.89 -25.98 13.29 55.43 0.74 -25.25 15 12 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 15 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 C -0.04 -0.77 9.44 -39.39 -0.37 -1.15 15 17 C -0.14 -2.58 6.12 -38.96 -0.24 -2.81 15 18 S -0.12 -2.01 25.26 -107.50 -2.72 -4.73 15 19 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 20 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 21 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.12 1.62 6.30 -52.48 -0.33 1.29 15 23 H 0.13 2.21 8.06 -52.48 -0.42 1.78 15 24 H 0.03 0.78 8.08 -51.93 -0.42 0.36 15 25 H 0.03 0.77 8.08 -51.93 -0.42 0.35 15 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 27 H 0.14 2.63 8.06 -52.49 -0.42 2.21 15 28 H 0.06 0.92 9.07 97.61 0.89 1.81 15 LS Contribution 261.95 15.07 3.95 3.95 Total: -1.00 -29.59 261.95 -6.85 -36.43 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -1.89 Total: -2.16 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.71 Total: -19.69 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.25 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.72 Total: -4.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.59 -6.85 -36.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306906277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.318 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds