Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42102 * 109.46426 * 2 1 4 4 C 1.81401 * 102.99944 * 243.61242 * 2 1 3 5 5 C 1.50700 * 109.46824 * 179.97438 * 4 2 1 6 6 C 1.38635 * 119.75016 * 90.00565 * 5 4 2 7 7 C 1.37614 * 120.25051 * 179.69933 * 6 5 4 8 8 C 1.40719 * 119.74235 * 0.27218 * 7 6 5 9 9 C 1.41399 * 120.24181 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00238 * 335.28948 * 9 8 7 11 11 C 1.39942 * 119.99857 * 155.28388 * 9 8 7 12 12 N 1.30828 * 120.00153 * 342.23392 * 11 9 8 13 13 Si 1.86797 * 120.00097 * 162.23135 * 11 9 8 14 14 H 1.48497 * 109.47389 * 94.66616 * 13 11 9 15 15 H 1.48504 * 109.47380 * 214.66797 * 13 11 9 16 16 H 1.48503 * 109.47148 * 334.66387 * 13 11 9 17 17 C 1.40710 * 119.51464 * 0.02562 * 8 7 6 18 18 C 1.37618 * 119.74455 * 359.97438 * 17 8 7 19 19 H 1.09003 * 109.47081 * 176.38681 * 1 2 3 20 20 H 1.09000 * 109.47228 * 296.38141 * 1 2 3 21 21 H 1.08999 * 109.47416 * 56.38769 * 1 2 3 22 22 H 1.09005 * 109.47229 * 59.99996 * 4 2 1 23 23 H 1.08991 * 109.47273 * 299.99922 * 4 2 1 24 24 H 1.08000 * 119.86943 * 359.97276 * 6 5 4 25 25 H 1.07991 * 120.13000 * 180.29057 * 7 6 5 26 26 H 0.97000 * 119.99938 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.13173 * 180.02562 * 17 8 7 28 28 H 1.08001 * 119.87978 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2875 1.3398 0.0000 4 6 2.2221 -0.7856 -1.5834 5 6 3.7195 -0.8604 -1.7357 6 6 4.4035 -1.9728 -1.2703 7 6 5.7702 -2.0548 -1.4097 8 6 6.4738 -1.0012 -2.0222 9 6 7.8780 -1.0746 -2.1713 10 1 8.4604 -1.6929 -1.5042 11 6 8.5131 -0.3461 -3.1834 12 7 7.8186 0.1157 -4.1914 13 14 10.3526 -0.0330 -3.0952 14 1 11.0699 -1.0747 -3.8734 15 1 10.6548 1.3053 -3.6634 16 1 10.7955 -0.0807 -1.6785 17 6 5.7699 0.1257 -2.4851 18 6 4.4032 0.1861 -2.3352 19 1 -0.3633 -1.0256 -0.0648 20 1 -0.3634 0.4566 0.9206 21 1 -0.3634 0.5689 -0.8558 22 1 1.8031 -0.1970 -2.3996 23 1 1.8032 -1.7914 -1.6085 24 1 3.8613 -2.7801 -0.8006 25 1 6.3005 -2.9243 -1.0507 26 1 8.2588 0.6209 -4.8927 27 1 6.2998 0.9398 -2.9571 28 1 3.8606 1.0499 -2.6901 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306941992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = -51.782692 kcal Electronic energy + Delta-G solvation = -12728.996377 eV Core-core repulsion = 10449.005775 eV Total energy + Delta-G solvation = -2279.990601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45231 -36.65949 -35.82009 -32.97329 -31.18509 -29.84192 -29.06991 -25.68470 -22.90116 -21.89556 -19.22511 -18.28415 -17.21870 -16.40720 -16.08508 -15.76357 -15.69155 -15.11086 -14.76446 -14.28119 -13.82721 -13.57682 -13.44995 -13.34495 -13.03795 -12.72509 -12.49198 -12.40477 -12.23744 -11.55297 -11.32579 -11.20564 -10.90767 -9.44997 -9.31321 -8.88731 -8.64042 -6.32535 0.53421 1.12157 1.15277 1.36372 1.49819 1.55494 1.97133 2.19167 2.73861 3.04173 3.75069 4.12005 4.28942 4.37501 4.46999 4.59167 4.72442 4.94557 5.09466 5.15416 5.18142 5.36100 5.43902 5.69725 5.95432 6.10508 6.19445 6.37476 6.69946 6.92674 7.03741 8.31660 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.062753 B = 0.006262 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.085947 B = 4470.227661 C = 4595.704528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.485 4.485 2 S 1.272 4.728 3 O -0.931 6.931 4 C -0.365 4.365 5 C -0.195 4.195 6 C -0.074 4.074 7 C -0.236 4.236 8 C 0.076 3.924 9 C -0.499 4.499 10 H 0.083 0.917 11 C 0.029 3.971 12 N -0.831 5.831 13 Si 0.983 3.017 14 H -0.258 1.258 15 H -0.271 1.271 16 H -0.256 1.256 17 C -0.196 4.196 18 C -0.111 4.111 19 H 0.151 0.849 20 H 0.112 0.888 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.158 0.842 24 H 0.155 0.845 25 H 0.112 0.888 26 H 0.286 0.714 27 H 0.090 0.910 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 -5.838 6.933 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 1.475 4.525 3 O -0.927 6.927 4 C -0.502 4.502 5 C -0.198 4.198 6 C -0.093 4.093 7 C -0.256 4.256 8 C 0.074 3.926 9 C -0.528 4.528 10 H 0.101 0.899 11 C -0.185 4.185 12 N -0.457 5.457 13 Si 0.804 3.196 14 H -0.183 1.183 15 H -0.196 1.196 16 H -0.179 1.179 17 C -0.215 4.215 18 C -0.130 4.130 19 H 0.169 0.831 20 H 0.131 0.869 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.176 0.824 24 H 0.173 0.827 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.089 -5.328 7.417 12.885 hybrid contribution 0.094 1.906 -2.354 3.030 sum -8.995 -3.422 5.063 10.875 Atomic orbital electron populations 1.27633 1.19857 1.10194 1.06737 1.69433 0.86464 0.96481 1.00131 1.93003 1.76432 1.39877 1.83411 1.26294 0.97060 1.11292 1.15538 1.18796 0.93248 0.97431 1.10301 1.20933 0.93473 0.96792 0.98093 1.21328 0.94937 0.98921 1.10390 1.18026 0.94027 0.90653 0.89901 1.19916 0.92858 1.25987 1.14050 0.89895 1.26864 1.05866 0.92645 0.93103 1.69912 1.40518 1.27724 1.07546 0.85179 0.75942 0.78569 0.79942 1.18262 1.19612 1.17916 1.21200 0.93631 0.99363 1.07350 1.20750 0.94518 0.97597 1.00169 0.83101 0.86910 0.91811 0.91696 0.82373 0.82715 0.86995 0.90363 0.89228 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -8.17 10.74 113.37 1.22 -6.95 15 2 S 1.27 32.68 13.78 -56.49 -0.78 31.90 15 3 O -0.93 -40.10 18.14 -148.98 -2.70 -42.80 15 4 C -0.37 -10.70 6.04 71.24 0.43 -10.27 15 5 C -0.20 -8.14 5.16 -19.67 -0.10 -8.24 15 6 C -0.07 -2.89 9.67 22.22 0.21 -2.68 15 7 C -0.24 -11.12 9.80 22.73 0.22 -10.90 15 8 C 0.08 4.26 5.57 -21.29 -0.12 4.14 15 9 C -0.50 -27.56 9.05 23.46 0.21 -27.35 15 10 H 0.08 4.32 7.91 -2.91 -0.02 4.29 15 11 C 0.03 1.54 5.14 85.26 0.44 1.98 15 12 N -0.83 -45.99 10.97 21.83 0.24 -45.75 15 13 Si 0.98 39.55 29.59 68.60 2.03 41.58 15 14 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 15 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 16 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 17 C -0.20 -11.23 8.70 22.73 0.20 -11.03 15 18 C -0.11 -5.73 9.67 22.22 0.21 -5.52 15 19 H 0.15 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.11 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.06 2.06 8.08 -2.39 -0.02 2.04 15 23 H 0.16 3.02 8.08 -2.39 -0.02 3.00 15 24 H 0.16 4.19 8.06 -2.91 -0.02 4.16 15 25 H 0.11 4.77 8.06 -2.92 -0.02 4.75 15 26 H 0.29 14.36 8.30 -92.71 -0.77 13.59 15 27 H 0.09 5.48 6.18 -2.91 -0.02 5.47 15 28 H 0.07 3.80 8.06 -2.91 -0.02 3.78 15 Total: -1.00 -77.67 260.48 2.86 -74.81 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.14 Total: 17.06 kcal Atomic # 6 Polarization: -79.74 SS G_CDS: 2.93 Total: -76.81 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.24 Total: -45.75 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -2.70 Total: -42.80 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 32.68 SS G_CDS: -0.78 Total: 31.90 kcal Total: -77.67 2.86 -74.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306941992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.032 kcal (2) G-P(sol) polarization free energy of solvation -77.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds