Wall clock time and date at job start Mon Mar 30 2020 03:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76202 * 103.00006 * 2 1 4 4 C 1.38790 * 120.09328 * 0.02562 * 3 2 1 5 5 C 1.38201 * 119.97272 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91909 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99929 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.38272 * 120.16474 * 0.27167 * 5 4 3 16 16 C 1.38295 * 120.19009 * 359.45078 * 15 5 4 17 17 C 1.38484 * 120.02632 * 0.54909 * 16 15 5 18 18 O 1.36009 * 120.08750 * 179.70472 * 17 16 15 19 19 H 1.09006 * 109.47554 * 59.99418 * 1 2 3 20 20 H 1.09000 * 109.47807 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47298 * 299.99735 * 1 2 3 22 22 H 1.08000 * 120.01832 * 359.97438 * 4 3 2 23 23 H 1.09004 * 109.47210 * 330.00222 * 6 5 4 24 24 H 1.08994 * 109.47551 * 209.99875 * 6 5 4 25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 26 26 H 1.08007 * 119.90436 * 179.72719 * 15 5 4 27 27 H 1.08005 * 119.99060 * 180.25037 * 16 15 5 28 28 H 0.96699 * 113.99745 * 270.02349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1968 2.6651 0.0005 5 6 1.5105 4.0110 0.0011 6 6 0.4091 5.0395 0.0011 7 6 0.0416 5.3819 1.4219 8 1 0.5545 4.9029 2.2428 9 6 -0.9454 6.3112 1.6739 10 7 -1.5697 6.8947 0.6743 11 14 -1.3956 6.7412 3.4351 12 1 -0.2030 7.2866 4.1319 13 1 -2.4777 7.7583 3.4351 14 1 -1.8645 5.5202 4.1384 15 6 2.8325 4.4163 -0.0046 16 6 3.8478 3.4773 0.0006 17 6 3.5425 2.1265 0.0001 18 8 4.5400 1.2020 -0.0008 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.1634 2.3513 0.0005 23 1 -0.4638 4.6372 -0.5131 24 1 0.7510 5.9381 -0.5123 25 1 -2.2643 7.5483 0.8516 26 1 3.0729 5.4693 -0.0086 27 1 4.8793 3.7975 0.0003 28 1 4.8283 0.9354 -0.8845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307393261.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:04 Heat of formation + Delta-G solvation = -31.964812 kcal Electronic energy + Delta-G solvation = -12751.902303 eV Core-core repulsion = 10472.771070 eV Total energy + Delta-G solvation = -2279.131233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20031 -36.55443 -33.22075 -30.91354 -30.66215 -28.65799 -26.63366 -23.24837 -22.48223 -20.74973 -18.17075 -16.52270 -16.27229 -15.49337 -15.22566 -14.65809 -14.08479 -13.76632 -13.56556 -13.11284 -12.57040 -12.27116 -11.88087 -11.79733 -11.51542 -11.16892 -10.76096 -10.59144 -10.36581 -9.96595 -9.65178 -9.54198 -9.20103 -8.48888 -7.95071 -7.05406 -6.11248 -4.15832 1.65272 1.77115 1.84028 2.66800 3.28212 3.32388 3.35890 4.10147 4.40293 4.55471 5.19313 5.22968 5.24363 5.30498 5.71495 5.76374 5.91013 5.97232 6.16526 6.36268 6.68187 6.87322 7.00218 7.28540 7.46227 7.69953 7.84080 7.92770 8.22636 8.89126 9.48631 10.98440 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.007533 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.963997 B = 3716.045033 C = 4160.164792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.121 6.121 3 C -0.110 4.110 4 C -0.122 4.122 5 C -0.022 4.022 6 C 0.048 3.952 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.276 1.276 15 C -0.112 4.112 16 C -0.127 4.127 17 C 0.087 3.913 18 O -0.492 6.492 19 H 0.083 0.917 20 H 0.102 0.898 21 H 0.086 0.914 22 H 0.125 0.875 23 H 0.029 0.971 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -9.999 -3.524 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.119 5.881 3 C -0.223 4.223 4 C -0.145 4.145 5 C -0.024 4.024 6 C 0.012 3.988 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.132 4.132 16 C -0.147 4.147 17 C 0.037 3.963 18 O -0.301 6.301 19 H 0.102 0.898 20 H 0.121 0.879 21 H 0.105 0.895 22 H 0.143 0.857 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.730 -10.884 -2.950 13.132 hybrid contribution -1.109 1.408 0.500 1.861 sum 5.620 -9.476 -2.450 11.287 Atomic orbital electron populations 1.23675 0.95255 1.06419 1.06175 1.85149 1.05798 1.03957 1.93168 1.22023 0.95935 0.96493 1.07866 1.21029 0.97688 0.92659 1.03147 1.20662 0.95987 0.94508 0.91232 1.18373 0.90733 0.91807 0.97932 1.21006 1.19631 1.23426 0.91313 0.92465 1.25001 0.95985 0.95833 0.97343 1.69944 1.24702 1.27731 1.30819 0.86583 0.78175 0.78240 0.84645 1.20055 1.21160 1.20135 1.21070 0.92029 0.99418 1.00698 1.21222 0.99696 0.91609 1.02213 1.17715 0.85033 0.87939 1.05572 1.84877 1.52924 1.59536 1.32721 0.89791 0.87904 0.89469 0.85724 0.95293 0.94963 0.92686 0.85554 0.85777 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.15 101.05 0.92 -0.92 15 2 S -0.12 -1.84 22.05 -107.50 -2.37 -4.21 15 3 C -0.11 -1.98 6.12 -38.96 -0.24 -2.22 15 4 C -0.12 -2.40 9.01 -39.39 -0.35 -2.75 15 5 C -0.02 -0.47 5.07 -104.62 -0.53 -1.00 15 6 C 0.05 1.22 5.10 -29.03 -0.15 1.07 15 7 C -0.52 -14.22 9.09 -34.44 -0.31 -14.53 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 10 N -0.89 -25.90 13.29 55.43 0.74 -25.16 15 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 15 C -0.11 -2.14 9.69 -39.55 -0.38 -2.52 15 16 C -0.13 -2.16 9.98 -39.47 -0.39 -2.55 15 17 C 0.09 1.50 6.70 -39.07 -0.26 1.24 15 18 O -0.49 -7.39 12.88 -19.77 -0.25 -7.64 15 19 H 0.08 1.03 7.75 -51.92 -0.40 0.62 15 20 H 0.10 1.02 8.14 -51.92 -0.42 0.60 15 21 H 0.09 1.16 7.75 -51.92 -0.40 0.75 15 22 H 0.12 2.36 5.88 -52.49 -0.31 2.05 15 23 H 0.03 0.76 8.08 -51.93 -0.42 0.34 15 24 H 0.03 0.84 8.08 -51.93 -0.42 0.42 15 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 26 H 0.13 2.29 8.06 -52.48 -0.42 1.86 15 27 H 0.12 1.77 8.06 -52.48 -0.42 1.34 15 28 H 0.38 3.89 9.06 45.56 0.41 4.31 15 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -30.36 261.36 -7.12 -37.48 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.35 Total: 1.92 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.80 Total: -22.61 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.74 Total: -25.16 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.25 Total: -7.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.37 Total: -4.21 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.36 -7.12 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307393261.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.514 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds