Wall clock time and date at job start Mon Mar 30 2020 03:16:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 C 1.76202 * 103.00006 * 2 1
4 4 C 1.38790 * 120.09328 * 0.02562 * 3 2 1
5 5 C 1.38201 * 119.97272 * 179.97438 * 4 3 2
6 6 C 1.50700 * 119.91909 * 179.97438 * 5 4 3
7 7 C 1.50702 * 109.46869 * 89.99929 * 6 5 4
8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5
9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5
10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6
11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6
12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7
13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7
14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7
15 15 C 1.38272 * 120.16474 * 0.27167 * 5 4 3
16 16 C 1.38295 * 120.19009 * 359.45078 * 15 5 4
17 17 C 1.38484 * 120.02632 * 0.54909 * 16 15 5
18 18 O 1.36009 * 120.08750 * 179.70472 * 17 16 15
19 19 H 1.09006 * 109.47554 * 59.99418 * 1 2 3
20 20 H 1.09000 * 109.47807 * 179.97438 * 1 2 3
21 21 H 1.09006 * 109.47298 * 299.99735 * 1 2 3
22 22 H 1.08000 * 120.01832 * 359.97438 * 4 3 2
23 23 H 1.09004 * 109.47210 * 330.00222 * 6 5 4
24 24 H 1.08994 * 109.47551 * 209.99875 * 6 5 4
25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7
26 26 H 1.08007 * 119.90436 * 179.72719 * 15 5 4
27 27 H 1.08005 * 119.99060 * 180.25037 * 16 15 5
28 28 H 0.96699 * 113.99745 * 270.02349 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 1.1968 2.6651 0.0005
5 6 1.5105 4.0110 0.0011
6 6 0.4091 5.0395 0.0011
7 6 0.0416 5.3819 1.4219
8 1 0.5545 4.9029 2.2428
9 6 -0.9454 6.3112 1.6739
10 7 -1.5697 6.8947 0.6743
11 14 -1.3956 6.7412 3.4351
12 1 -0.2030 7.2866 4.1319
13 1 -2.4777 7.7583 3.4351
14 1 -1.8645 5.5202 4.1384
15 6 2.8325 4.4163 -0.0046
16 6 3.8478 3.4773 0.0006
17 6 3.5425 2.1265 0.0001
18 8 4.5400 1.2020 -0.0008
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3635 -1.0276 -0.0005
21 1 -0.3634 0.5138 0.8900
22 1 0.1634 2.3513 0.0005
23 1 -0.4638 4.6372 -0.5131
24 1 0.7510 5.9381 -0.5123
25 1 -2.2643 7.5483 0.8516
26 1 3.0729 5.4693 -0.0086
27 1 4.8793 3.7975 0.0003
28 1 4.8283 0.9354 -0.8845
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307393261.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:04
Heat of formation + Delta-G solvation = -51.118206 kcal
Electronic energy + Delta-G solvation = -12752.732857 eV
Core-core repulsion = 10472.771070 eV
Total energy + Delta-G solvation = -2279.961787 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.59156 -37.91960 -35.22670 -32.43947 -32.27319 -29.73225 -28.44708 -25.12836
-23.90733 -22.30542 -19.44213 -18.55064 -17.74488 -16.93359 -16.63652 -16.42006
-15.48252 -15.01164 -14.74194 -14.53633 -14.43422 -13.57306 -13.49314 -13.34570
-13.14264 -12.88402 -12.53755 -12.40790 -11.82758 -11.61632 -11.46667 -11.07895
-10.63530 -10.61101 -9.47475 -8.33567 -8.20966 -6.36380 0.22503 0.37017
0.60821 1.39109 1.40841 1.47009 1.49445 2.36783 2.70215 3.08209
3.27539 3.94164 4.18410 4.22301 4.26103 4.42695 4.50112 4.70909
4.84813 4.96238 5.19782 5.28219 5.30732 5.38199 5.70556 5.85943
5.94122 6.14577 6.75441 6.83832 7.32457 8.85992
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.031740 B = 0.007533 C = 0.006729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 881.963997 B = 3716.045033 C = 4160.164792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 S -0.110 6.110
3 C -0.122 4.122
4 C -0.130 4.130
5 C -0.052 4.052
6 C 0.058 3.942
7 C -0.532 4.532
8 H 0.052 0.948
9 C 0.009 3.991
10 N -0.927 5.927
11 Si 0.962 3.038
12 H -0.268 1.268
13 H -0.279 1.279
14 H -0.269 1.269
15 C -0.120 4.120
16 C -0.119 4.119
17 C 0.096 3.904
18 O -0.492 6.492
19 H 0.085 0.915
20 H 0.134 0.866
21 H 0.078 0.922
22 H 0.122 0.878
23 H 0.005 0.995
24 H 0.011 0.989
25 H 0.267 0.733
26 H 0.129 0.871
27 H 0.157 0.843
28 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.336 -11.343 -2.760 13.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.314 4.314
2 S 0.131 5.869
3 C -0.235 4.235
4 C -0.154 4.154
5 C -0.054 4.054
6 C 0.021 3.979
7 C -0.570 4.570
8 H 0.070 0.930
9 C -0.189 4.189
10 N -0.567 5.567
11 Si 0.787 3.213
12 H -0.193 1.193
13 H -0.204 1.204
14 H -0.194 1.194
15 C -0.140 4.140
16 C -0.139 4.139
17 C 0.046 3.954
18 O -0.304 6.304
19 H 0.104 0.896
20 H 0.152 0.848
21 H 0.097 0.903
22 H 0.140 0.860
23 H 0.024 0.976
24 H 0.029 0.971
25 H 0.075 0.925
26 H 0.147 0.853
27 H 0.174 0.826
28 H 0.262 0.738
Dipole moment (debyes) X Y Z Total
from point charges 7.795 -12.250 -2.205 14.686
hybrid contribution -1.376 1.696 0.202 2.193
sum 6.419 -10.553 -2.003 12.514
Atomic orbital electron populations
1.23786 0.93381 1.08341 1.05868 1.85044 1.07879 1.01274 1.92744
1.22261 0.96037 0.98029 1.07185 1.20973 0.98260 0.92377 1.03771
1.20374 0.95872 0.94438 0.94733 1.18098 0.91296 0.92057 0.96414
1.21313 1.19798 1.23547 0.92337 0.92982 1.25862 0.95817 0.95631
1.01620 1.70059 1.25270 1.28326 1.33020 0.85541 0.78125 0.78202
0.79469 1.19304 1.20428 1.19424 1.21121 0.91643 1.00222 1.01006
1.21463 1.00588 0.91130 1.00715 1.17843 0.85304 0.88476 1.03812
1.84811 1.51946 1.58836 1.34854 0.89614 0.84806 0.90311 0.85991
0.97643 0.97118 0.92456 0.85322 0.82560 0.73845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.40 9.15 113.37 1.04 -2.36 15
2 S -0.11 -3.11 22.05 -56.49 -1.25 -4.36 15
3 C -0.12 -4.23 6.12 22.68 0.14 -4.09 15
4 C -0.13 -5.16 9.01 22.39 0.20 -4.96 15
5 C -0.05 -2.29 5.07 -19.87 -0.10 -2.40 15
6 C 0.06 3.07 5.10 29.10 0.15 3.22 15
7 C -0.53 -30.09 9.09 25.60 0.23 -29.86 15
8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 15
9 C 0.01 0.53 5.46 84.66 0.46 0.99 15
10 N -0.93 -54.95 13.29 21.45 0.28 -54.66 15
11 Si 0.96 43.85 29.54 68.60 2.03 45.87 15
12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15
13 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15
14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15
15 C -0.12 -4.55 9.69 22.29 0.22 -4.33 15
16 C -0.12 -3.79 9.98 22.34 0.22 -3.57 15
17 C 0.10 3.08 6.70 22.60 0.15 3.24 15
18 O -0.49 -13.11 12.88 -93.65 -1.21 -14.31 15
19 H 0.08 2.00 7.75 -2.39 -0.02 1.98 15
20 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15
21 H 0.08 2.01 7.75 -2.39 -0.02 1.99 15
22 H 0.12 4.73 5.88 -2.91 -0.02 4.71 15
23 H 0.01 0.29 8.08 -2.38 -0.02 0.27 15
24 H 0.01 0.58 8.08 -2.39 -0.02 0.56 15
25 H 0.27 14.84 8.31 -92.70 -0.77 14.07 15
26 H 0.13 4.70 8.06 -2.91 -0.02 4.67 15
27 H 0.16 3.90 8.06 -2.91 -0.02 3.88 15
28 H 0.40 6.76 9.06 -74.06 -0.67 6.08 15
Total: -1.00 -65.20 261.36 3.07 -62.13
By element:
Atomic # 1 Polarization: 8.96 SS G_CDS: 0.50 Total: 9.46 kcal
Atomic # 6 Polarization: -46.84 SS G_CDS: 2.71 Total: -44.12 kcal
Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal
Atomic # 8 Polarization: -13.11 SS G_CDS: -1.21 Total: -14.31 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal
Atomic # 16 Polarization: -3.11 SS G_CDS: -1.25 Total: -4.36 kcal
Total: -65.20 3.07 -62.13 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307393261.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal
(2) G-P(sol) polarization free energy of solvation -65.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds