Wall clock time and date at job start Mon Mar 30 2020 03:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76202 * 103.00006 * 2 1 4 4 C 1.38790 * 120.09328 * 0.02562 * 3 2 1 5 5 C 1.38201 * 119.97272 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91909 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99929 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.38272 * 120.16474 * 0.27167 * 5 4 3 16 16 C 1.38295 * 120.19009 * 359.45078 * 15 5 4 17 17 C 1.38484 * 120.02632 * 0.54909 * 16 15 5 18 18 O 1.36009 * 120.08750 * 179.70472 * 17 16 15 19 19 H 1.09006 * 109.47554 * 59.99418 * 1 2 3 20 20 H 1.09000 * 109.47807 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47298 * 299.99735 * 1 2 3 22 22 H 1.08000 * 120.01832 * 359.97438 * 4 3 2 23 23 H 1.09004 * 109.47210 * 330.00222 * 6 5 4 24 24 H 1.08994 * 109.47551 * 209.99875 * 6 5 4 25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 26 26 H 1.08007 * 119.90436 * 179.72719 * 15 5 4 27 27 H 1.08005 * 119.99060 * 180.25037 * 16 15 5 28 28 H 0.96699 * 113.99745 * 270.02349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1968 2.6651 0.0005 5 6 1.5105 4.0110 0.0011 6 6 0.4091 5.0395 0.0011 7 6 0.0416 5.3819 1.4219 8 1 0.5545 4.9029 2.2428 9 6 -0.9454 6.3112 1.6739 10 7 -1.5697 6.8947 0.6743 11 14 -1.3956 6.7412 3.4351 12 1 -0.2030 7.2866 4.1319 13 1 -2.4777 7.7583 3.4351 14 1 -1.8645 5.5202 4.1384 15 6 2.8325 4.4163 -0.0046 16 6 3.8478 3.4773 0.0006 17 6 3.5425 2.1265 0.0001 18 8 4.5400 1.2020 -0.0008 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.1634 2.3513 0.0005 23 1 -0.4638 4.6372 -0.5131 24 1 0.7510 5.9381 -0.5123 25 1 -2.2643 7.5483 0.8516 26 1 3.0729 5.4693 -0.0086 27 1 4.8793 3.7975 0.0003 28 1 4.8283 0.9354 -0.8845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307393261.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:04 Heat of formation + Delta-G solvation = -51.118206 kcal Electronic energy + Delta-G solvation = -12752.732857 eV Core-core repulsion = 10472.771070 eV Total energy + Delta-G solvation = -2279.961787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59156 -37.91960 -35.22670 -32.43947 -32.27319 -29.73225 -28.44708 -25.12836 -23.90733 -22.30542 -19.44213 -18.55064 -17.74488 -16.93359 -16.63652 -16.42006 -15.48252 -15.01164 -14.74194 -14.53633 -14.43422 -13.57306 -13.49314 -13.34570 -13.14264 -12.88402 -12.53755 -12.40790 -11.82758 -11.61632 -11.46667 -11.07895 -10.63530 -10.61101 -9.47475 -8.33567 -8.20966 -6.36380 0.22503 0.37017 0.60821 1.39109 1.40841 1.47009 1.49445 2.36783 2.70215 3.08209 3.27539 3.94164 4.18410 4.22301 4.26103 4.42695 4.50112 4.70909 4.84813 4.96238 5.19782 5.28219 5.30732 5.38199 5.70556 5.85943 5.94122 6.14577 6.75441 6.83832 7.32457 8.85992 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.007533 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.963997 B = 3716.045033 C = 4160.164792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.110 6.110 3 C -0.122 4.122 4 C -0.130 4.130 5 C -0.052 4.052 6 C 0.058 3.942 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.269 1.269 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.096 3.904 18 O -0.492 6.492 19 H 0.085 0.915 20 H 0.134 0.866 21 H 0.078 0.922 22 H 0.122 0.878 23 H 0.005 0.995 24 H 0.011 0.989 25 H 0.267 0.733 26 H 0.129 0.871 27 H 0.157 0.843 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 -11.343 -2.760 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.131 5.869 3 C -0.235 4.235 4 C -0.154 4.154 5 C -0.054 4.054 6 C 0.021 3.979 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.194 1.194 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.046 3.954 18 O -0.304 6.304 19 H 0.104 0.896 20 H 0.152 0.848 21 H 0.097 0.903 22 H 0.140 0.860 23 H 0.024 0.976 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.174 0.826 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 7.795 -12.250 -2.205 14.686 hybrid contribution -1.376 1.696 0.202 2.193 sum 6.419 -10.553 -2.003 12.514 Atomic orbital electron populations 1.23786 0.93381 1.08341 1.05868 1.85044 1.07879 1.01274 1.92744 1.22261 0.96037 0.98029 1.07185 1.20973 0.98260 0.92377 1.03771 1.20374 0.95872 0.94438 0.94733 1.18098 0.91296 0.92057 0.96414 1.21313 1.19798 1.23547 0.92337 0.92982 1.25862 0.95817 0.95631 1.01620 1.70059 1.25270 1.28326 1.33020 0.85541 0.78125 0.78202 0.79469 1.19304 1.20428 1.19424 1.21121 0.91643 1.00222 1.01006 1.21463 1.00588 0.91130 1.00715 1.17843 0.85304 0.88476 1.03812 1.84811 1.51946 1.58836 1.34854 0.89614 0.84806 0.90311 0.85991 0.97643 0.97118 0.92456 0.85322 0.82560 0.73845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.15 113.37 1.04 -2.36 15 2 S -0.11 -3.11 22.05 -56.49 -1.25 -4.36 15 3 C -0.12 -4.23 6.12 22.68 0.14 -4.09 15 4 C -0.13 -5.16 9.01 22.39 0.20 -4.96 15 5 C -0.05 -2.29 5.07 -19.87 -0.10 -2.40 15 6 C 0.06 3.07 5.10 29.10 0.15 3.22 15 7 C -0.53 -30.09 9.09 25.60 0.23 -29.86 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 15 9 C 0.01 0.53 5.46 84.66 0.46 0.99 15 10 N -0.93 -54.95 13.29 21.45 0.28 -54.66 15 11 Si 0.96 43.85 29.54 68.60 2.03 45.87 15 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 13 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 15 C -0.12 -4.55 9.69 22.29 0.22 -4.33 15 16 C -0.12 -3.79 9.98 22.34 0.22 -3.57 15 17 C 0.10 3.08 6.70 22.60 0.15 3.24 15 18 O -0.49 -13.11 12.88 -93.65 -1.21 -14.31 15 19 H 0.08 2.00 7.75 -2.39 -0.02 1.98 15 20 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.08 2.01 7.75 -2.39 -0.02 1.99 15 22 H 0.12 4.73 5.88 -2.91 -0.02 4.71 15 23 H 0.01 0.29 8.08 -2.38 -0.02 0.27 15 24 H 0.01 0.58 8.08 -2.39 -0.02 0.56 15 25 H 0.27 14.84 8.31 -92.70 -0.77 14.07 15 26 H 0.13 4.70 8.06 -2.91 -0.02 4.67 15 27 H 0.16 3.90 8.06 -2.91 -0.02 3.88 15 28 H 0.40 6.76 9.06 -74.06 -0.67 6.08 15 Total: -1.00 -65.20 261.36 3.07 -62.13 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.50 Total: 9.46 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 2.71 Total: -44.12 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.21 Total: -14.31 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.25 Total: -4.36 kcal Total: -65.20 3.07 -62.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307393261.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds