Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.37849 * 119.93893 * 99.72494 * 10 9 7 12 12 C 1.39679 * 119.87617 * 179.73369 * 11 10 9 13 13 C 1.47591 * 120.12603 * 180.27178 * 12 11 10 14 14 O 1.21487 * 120.00051 * 0.27183 * 13 12 11 15 15 O 1.34729 * 120.00553 * 180.26990 * 13 12 11 16 16 C 1.39735 * 119.75476 * 0.53859 * 12 11 10 17 17 C 1.37793 * 119.87146 * 359.73842 * 16 12 11 18 18 C 1.38644 * 119.94170 * 280.00105 * 10 9 7 19 19 F 1.35099 * 119.87428 * 0.02562 * 18 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.08003 * 120.05699 * 359.97438 * 11 10 9 24 24 H 0.96700 * 117.00633 * 179.97438 * 15 13 12 25 25 H 1.07996 * 120.06503 * 179.70942 * 16 12 11 26 26 H 1.08001 * 119.94214 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 6 4.4284 -3.1939 -1.1973 12 6 4.8990 -4.5091 -1.1995 13 6 5.3500 -5.1324 -2.4590 14 8 5.3169 -4.4999 -3.4957 15 8 5.7983 -6.4029 -2.4592 16 6 4.9360 -5.2343 -0.0056 17 6 4.5137 -4.6474 1.1673 18 6 4.0527 -3.3392 1.1645 19 9 3.6394 -2.7689 2.3174 20 1 -0.4849 0.8401 0.0041 21 1 3.8711 -0.6782 -0.9024 22 1 3.8785 -0.6825 0.8776 23 1 4.3931 -2.6304 -2.1180 24 1 6.0825 -6.7681 -3.3083 25 1 5.2945 -6.2530 -0.0023 26 1 4.5414 -5.2070 2.0906 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307511438.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -142.608182 kcal Electronic energy + Delta-G solvation = -14564.786632 eV Core-core repulsion = 11714.644366 eV Total energy + Delta-G solvation = -2850.142266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.87882 -41.39734 -39.61078 -37.06465 -35.55780 -33.56756 -31.95179 -29.65952 -25.58146 -25.12829 -23.00140 -21.74925 -19.09941 -19.02967 -18.58042 -17.98882 -17.22672 -16.74773 -16.48605 -16.27960 -15.46697 -14.84657 -14.74789 -14.44087 -14.15644 -13.72528 -13.63742 -13.29078 -12.80795 -12.55528 -12.39345 -12.03363 -11.84474 -11.72352 -11.59896 -10.82347 -10.00384 -9.65251 -8.33726 -6.39687 -0.46303 0.25932 1.34668 1.36325 1.43611 1.47806 2.02677 2.32444 2.62625 3.00662 3.27826 3.69284 3.84768 4.08612 4.17872 4.31824 4.78116 4.86531 4.95070 4.99165 5.09093 5.19665 5.44686 5.51095 5.57825 5.78300 6.17742 6.64490 6.98665 7.23728 8.82815 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.032372 B = 0.008029 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.725947 B = 3486.400380 C = 3997.137816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.247 1.247 7 C -0.524 4.524 8 H 0.029 0.971 9 C 0.020 3.980 10 C -0.113 4.113 11 C -0.040 4.040 12 C -0.152 4.152 13 C 0.542 3.458 14 O -0.550 6.550 15 O -0.495 6.495 16 C -0.029 4.029 17 C -0.157 4.157 18 C 0.117 3.883 19 F -0.141 7.141 20 H 0.269 0.731 21 H 0.039 0.961 22 H 0.034 0.966 23 H 0.133 0.867 24 H 0.435 0.565 25 H 0.185 0.815 26 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.936 -11.739 -0.333 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.561 4.561 8 H 0.047 0.953 9 C -0.017 4.017 10 C -0.113 4.113 11 C -0.059 4.059 12 C -0.154 4.154 13 C 0.388 3.612 14 O -0.443 6.443 15 O -0.309 6.309 16 C -0.047 4.047 17 C -0.175 4.175 18 C 0.097 3.903 19 F -0.119 7.119 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.150 0.850 24 H 0.297 0.703 25 H 0.202 0.798 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 13.643 -11.302 -0.196 17.717 hybrid contribution -0.361 0.943 -0.438 1.100 sum 13.282 -10.359 -0.634 16.856 Atomic orbital electron populations 1.70046 1.08259 1.28387 1.51880 1.25949 0.95632 1.03355 0.93735 0.85685 0.79561 0.78187 0.79487 1.18729 1.20600 1.17007 1.21080 0.90427 0.93226 1.51415 0.95253 1.18599 0.94798 0.90057 0.98216 1.20129 0.99959 0.98715 0.92538 1.20987 0.93773 0.93856 0.97271 1.19136 1.08621 0.94807 0.92787 1.20582 0.72836 0.79928 0.87849 1.90893 1.53584 1.64659 1.35128 1.84484 1.75643 1.27024 1.43772 1.21532 0.93599 1.00749 0.88821 1.21427 1.02109 0.92158 1.01832 1.18309 0.97523 0.93097 0.81328 1.91476 1.87681 1.85395 1.47372 0.92220 0.94280 0.94829 0.84955 0.70279 0.79809 0.80688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.53 15 2 C 0.01 0.64 5.47 84.66 0.46 1.10 15 3 Si 0.95 44.36 27.47 68.60 1.88 46.25 15 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 15 7 C -0.52 -30.77 9.64 25.60 0.25 -30.52 15 8 H 0.03 1.92 7.98 -2.91 -0.02 1.89 15 9 C 0.02 0.99 3.89 29.10 0.11 1.10 15 10 C -0.11 -4.65 5.08 -19.86 -0.10 -4.75 15 11 C -0.04 -1.48 9.21 22.53 0.21 -1.28 15 12 C -0.15 -4.44 5.87 -20.10 -0.12 -4.56 15 13 C 0.54 14.30 8.27 70.29 0.58 14.88 15 14 O -0.55 -18.41 17.13 19.88 0.34 -18.07 15 15 O -0.50 -8.03 12.68 -56.39 -0.71 -8.75 15 16 C -0.03 -0.67 9.61 22.53 0.22 -0.46 15 17 C -0.16 -4.11 10.01 22.27 0.22 -3.88 15 18 C 0.12 4.31 7.24 22.48 0.16 4.48 15 19 F -0.14 -5.76 16.65 44.97 0.75 -5.01 15 20 H 0.27 15.78 8.31 -92.71 -0.77 15.01 15 21 H 0.04 1.79 7.43 -2.39 -0.02 1.77 15 22 H 0.03 1.61 7.00 -2.39 -0.02 1.59 15 23 H 0.13 5.02 7.62 -2.91 -0.02 4.99 15 24 H 0.43 2.93 9.11 -74.06 -0.67 2.25 15 25 H 0.18 2.68 7.61 -2.91 -0.02 2.66 15 26 H 0.18 3.26 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -73.84 246.04 5.05 -68.80 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: 0.49 Total: 0.19 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 1.99 Total: -23.88 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.53 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.37 Total: -26.82 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.75 Total: -5.01 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -73.84 5.05 -68.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307511438.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.811 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds