Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99615 * 2 1 4 4 H 1.48506 * 109.47123 * 239.99912 * 3 2 1 5 5 H 1.48503 * 109.47419 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47260 * 120.00113 * 3 2 1 7 7 C 1.37872 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.38406 * 119.90710 * 270.02060 * 10 9 7 12 12 C 1.38494 * 120.33521 * 179.97438 * 11 10 9 13 13 Cl 1.73594 * 119.92705 * 180.02562 * 12 11 10 14 14 C 1.38030 * 120.14662 * 0.02562 * 12 11 10 15 15 C 1.39825 * 119.80771 * 359.97438 * 14 12 11 16 16 C 1.47167 * 120.16129 * 179.97438 * 15 14 12 17 17 O 1.21254 * 120.00537 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.90659 * 89.99953 * 10 9 7 19 19 H 0.96996 * 120.00191 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46902 * 59.99743 * 9 7 2 21 21 H 1.09000 * 109.46813 * 299.99842 * 9 7 2 22 22 H 1.07999 * 119.82823 * 359.95680 * 11 10 9 23 23 H 1.07995 * 120.09347 * 180.26826 * 14 12 11 24 24 H 1.08006 * 120.00086 * 179.97438 * 16 15 14 25 25 H 1.08004 * 120.07147 * 0.04130 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6793 -4.1687 -1.1992 12 6 3.5797 -5.2210 -1.2096 13 17 4.1361 -5.8699 -2.7205 14 6 4.0357 -5.7549 -0.0212 15 6 3.5863 -5.2299 1.1944 16 6 4.0669 -5.7936 2.4660 17 8 4.8549 -6.7152 2.4615 18 6 2.6773 -4.1670 1.1957 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.3253 -3.7553 -2.1320 23 1 4.7411 -6.5725 -0.0302 24 1 3.7183 -5.3859 3.4035 25 1 2.3256 -3.7567 2.1308 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307523301.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = -48.656840 kcal Electronic energy + Delta-G solvation = -12292.830955 eV Core-core repulsion = 9875.099100 eV Total energy + Delta-G solvation = -2417.731855 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.84988 -39.30092 -37.50972 -35.41858 -33.17118 -32.15028 -29.05068 -25.97752 -25.16385 -23.03848 -21.16173 -18.51853 -18.05951 -17.31457 -16.75245 -16.45571 -15.56177 -15.47716 -15.38037 -14.55477 -14.36972 -13.98322 -13.40130 -13.11272 -12.81359 -12.47601 -12.45956 -12.35894 -12.09910 -11.56529 -11.52280 -10.79537 -10.57617 -9.87326 -9.61153 -8.19584 -6.31664 -0.38229 0.25258 1.07082 1.42898 1.44728 1.47471 1.53517 2.41296 2.76903 3.13352 3.32762 3.83265 4.06162 4.10849 4.32504 4.41261 4.70918 4.89484 5.12569 5.18488 5.22319 5.36614 5.74986 5.76195 5.83123 6.16447 6.43959 6.80696 7.37518 8.89742 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.007611 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.796347 B = 3677.879635 C = 4324.173639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.057 3.943 10 C -0.060 4.060 11 C -0.088 4.088 12 C -0.049 4.049 13 Cl -0.068 7.068 14 C -0.079 4.079 15 C -0.184 4.184 16 C 0.402 3.598 17 O -0.499 6.499 18 C -0.059 4.059 19 H 0.266 0.734 20 H 0.008 0.992 21 H 0.021 0.979 22 H 0.128 0.872 23 H 0.143 0.857 24 H 0.159 0.841 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -8.650 1.626 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.061 4.061 11 C -0.107 4.107 12 C -0.076 4.076 13 Cl -0.039 7.039 14 C -0.098 4.098 15 C -0.185 4.185 16 C 0.263 3.737 17 O -0.374 6.374 18 C -0.077 4.077 19 H 0.074 0.926 20 H 0.026 0.974 21 H 0.040 0.960 22 H 0.146 0.854 23 H 0.161 0.839 24 H 0.175 0.825 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.265 -9.091 1.488 11.140 hybrid contribution 0.016 1.079 -0.615 1.242 sum 6.280 -8.011 0.873 10.217 Atomic orbital electron populations 1.70045 1.07516 1.28026 1.51030 1.25799 0.95623 1.02742 0.94591 0.85598 0.78357 0.78604 0.79113 1.19760 1.20927 1.19029 1.21335 0.93173 0.91071 1.51284 0.92516 1.18136 0.92631 0.90151 0.97073 1.20361 0.97429 0.95590 0.92700 1.21255 0.95788 0.94320 0.99342 1.20805 1.00806 0.98514 0.87472 1.98341 1.88622 1.85524 1.31419 1.21290 0.98872 0.99514 0.90131 1.21094 1.01515 0.99614 0.96278 1.24613 0.76456 0.79587 0.93017 1.90497 1.29324 1.26593 1.90982 1.21587 0.93966 0.93130 0.99013 0.92554 0.97384 0.96041 0.85418 0.83919 0.82517 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.59 13.29 21.45 0.28 -52.31 15 2 C 0.01 0.61 5.46 84.65 0.46 1.07 15 3 Si 0.96 41.89 29.54 68.60 2.03 43.91 15 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 6 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 7 C -0.53 -27.80 9.09 25.60 0.23 -27.57 15 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 15 9 C 0.06 2.72 5.10 29.10 0.15 2.87 15 10 C -0.06 -2.32 5.06 -19.91 -0.10 -2.43 15 11 C -0.09 -3.18 9.47 22.37 0.21 -2.96 15 12 C -0.05 -1.57 6.31 22.28 0.14 -1.43 15 13 Cl -0.07 -1.91 28.95 -2.72 -0.08 -1.99 15 14 C -0.08 -2.36 9.38 22.60 0.21 -2.14 15 15 C -0.18 -5.12 5.87 -20.16 -0.12 -5.24 15 16 C 0.40 9.11 11.46 70.17 0.80 9.91 15 17 O -0.50 -14.55 17.17 -2.95 -0.05 -14.60 15 18 C -0.06 -1.84 9.44 22.58 0.21 -1.63 15 19 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 20 H 0.01 0.41 8.08 -2.39 -0.02 0.39 15 21 H 0.02 1.06 8.08 -2.39 -0.02 1.04 15 22 H 0.13 4.65 8.06 -2.91 -0.02 4.63 15 23 H 0.14 3.97 7.65 -2.91 -0.02 3.95 15 24 H 0.16 2.08 8.06 -2.91 -0.02 2.05 15 25 H 0.16 4.17 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -60.40 250.94 5.58 -54.82 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 1.20 Total: -0.28 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 2.21 Total: -29.55 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.28 Total: -52.31 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.05 Total: -14.60 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -60.40 5.58 -54.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307523301.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.162 kcal (2) G-P(sol) polarization free energy of solvation -60.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds