Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48494 * 109.47006 * 269.99945 * 3 2 1 5 5 H 1.48501 * 109.46629 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47011 * 149.99800 * 3 2 1 7 7 C 1.37887 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.38199 * 120.09065 * 95.72898 * 10 9 7 12 12 F 1.35094 * 119.95310 * 0.05073 * 11 10 9 13 13 C 1.38560 * 120.09247 * 180.02562 * 11 10 9 14 14 C 1.38350 * 120.28290 * 0.02562 * 13 11 10 15 15 C 1.37933 * 120.17861 * 359.67447 * 14 13 11 16 16 C 1.39586 * 120.08828 * 275.75635 * 10 9 7 17 17 C 1.47738 * 120.13720 * 359.97438 * 16 10 9 18 18 O 1.21466 * 120.00104 * 6.39409 * 17 16 10 19 19 O 1.34706 * 119.99682 * 186.12112 * 17 16 10 20 20 H 0.96993 * 120.00525 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46984 * 60.00249 * 9 7 2 22 22 H 1.08997 * 109.47143 * 299.99864 * 9 7 2 23 23 H 1.08001 * 119.85574 * 180.02562 * 13 11 10 24 24 H 1.08003 * 119.90919 * 180.02562 * 14 13 11 25 25 H 1.07997 * 120.04932 * 180.29531 * 15 14 13 26 26 H 0.96708 * 116.99847 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2305 -3.6446 -0.0027 11 6 2.5900 -4.2498 1.1865 12 9 2.0621 -3.8148 2.3514 13 6 3.4909 -5.3026 1.1857 14 6 4.0357 -5.7537 -0.0034 15 6 3.6802 -5.1620 -1.1975 16 6 2.7773 -4.0967 -1.2048 17 6 2.3979 -3.4547 -2.4802 18 8 1.7010 -2.4598 -2.4756 19 8 2.8293 -3.9695 -3.6478 20 1 -0.4850 0.8399 -0.0004 21 1 0.6249 -2.5563 -0.8920 22 1 0.6242 -2.5575 0.8880 23 1 3.7689 -5.7731 2.1172 24 1 4.7370 -6.5750 0.0029 25 1 4.1031 -5.5188 -2.1249 26 1 2.5547 -3.5151 -4.4561 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307623480.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -133.823336 kcal Electronic energy + Delta-G solvation = -15081.775298 eV Core-core repulsion = 12232.013971 eV Total energy + Delta-G solvation = -2849.761327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.77937 -41.35827 -39.36105 -37.01898 -35.35610 -33.15010 -31.87898 -29.12734 -26.04157 -24.84589 -22.83354 -21.84939 -19.20038 -18.63979 -18.26412 -17.22676 -16.91630 -16.63786 -16.59630 -16.28143 -16.19912 -14.65216 -14.45316 -14.18288 -14.08446 -13.51716 -13.22645 -12.87776 -12.81331 -12.68868 -12.41258 -12.31867 -11.67591 -11.59507 -10.97595 -10.47842 -9.96503 -9.53405 -8.17276 -6.25454 -0.28173 0.29526 1.33160 1.36589 1.46263 1.66377 2.13729 2.38734 2.75559 3.16105 3.43872 3.91490 3.98130 4.12178 4.26581 4.43390 4.89718 5.06266 5.15517 5.27263 5.29565 5.32379 5.65888 5.70635 5.85993 5.91643 6.16478 6.80819 7.19143 7.37995 8.94946 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.011542 C = 0.008923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.541478 B = 2425.241398 C = 3137.275517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.044 0.956 9 C 0.050 3.950 10 C -0.054 4.054 11 C 0.048 3.952 12 F -0.152 7.152 13 C -0.105 4.105 14 C -0.108 4.108 15 C -0.060 4.060 16 C -0.127 4.127 17 C 0.507 3.493 18 O -0.507 6.507 19 O -0.504 6.504 20 H 0.262 0.738 21 H 0.035 0.965 22 H -0.010 1.010 23 H 0.171 0.829 24 H 0.190 0.810 25 H 0.172 0.828 26 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -13.116 -3.322 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.014 3.986 10 C -0.055 4.055 11 C 0.029 3.971 12 F -0.130 7.130 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.078 4.078 16 C -0.128 4.128 17 C 0.350 3.650 18 O -0.396 6.396 19 O -0.318 6.318 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.008 0.992 23 H 0.188 0.812 24 H 0.207 0.793 25 H 0.189 0.811 26 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 9.843 -12.906 -2.920 16.492 hybrid contribution -0.643 1.761 -0.239 1.890 sum 9.200 -11.145 -3.159 14.793 Atomic orbital electron populations 1.70084 1.07669 1.27458 1.52059 1.25842 0.95768 1.02891 0.94932 0.85506 0.78762 0.78805 0.78333 1.20076 1.20173 1.18805 1.20960 0.92040 0.90861 1.49702 0.93727 1.18255 0.93214 0.90697 0.96451 1.20641 0.97052 0.95604 0.92223 1.17800 1.00092 0.98752 0.80416 1.91432 1.85642 1.89631 1.46342 1.21764 0.94280 0.93819 1.02435 1.21430 1.00407 1.01170 0.89488 1.21823 0.93188 0.91577 1.01211 1.18834 1.04052 1.00965 0.88958 1.21051 0.77207 0.81673 0.85028 1.91101 1.35457 1.25383 1.87644 1.84441 1.72005 1.58684 1.16700 0.92932 0.94714 0.99159 0.81165 0.79278 0.81084 0.71191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.72 13.29 21.45 0.28 -60.43 15 2 C 0.00 0.17 5.46 84.66 0.46 0.63 15 3 Si 0.96 47.75 29.54 68.60 2.03 49.78 15 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 15 6 H -0.26 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.50 -30.69 7.99 25.60 0.20 -30.49 15 8 H 0.04 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.05 2.94 4.25 29.10 0.12 3.06 15 10 C -0.05 -2.48 5.11 -19.55 -0.10 -2.58 15 11 C 0.05 1.92 7.24 22.34 0.16 2.08 15 12 F -0.15 -6.72 16.38 44.97 0.74 -5.98 15 13 C -0.10 -2.76 10.02 22.37 0.22 -2.53 15 14 C -0.11 -2.21 10.03 22.22 0.22 -1.99 15 15 C -0.06 -1.53 9.61 22.54 0.22 -1.32 15 16 C -0.13 -4.82 5.87 -20.10 -0.12 -4.94 15 17 C 0.51 20.00 8.20 70.33 0.58 20.58 15 18 O -0.51 -25.94 13.26 19.95 0.26 -25.67 15 19 O -0.50 -13.54 12.70 -56.16 -0.71 -14.25 15 20 H 0.26 15.97 8.31 -92.71 -0.77 15.20 15 21 H 0.03 2.21 5.80 -2.39 -0.01 2.20 15 22 H -0.01 -0.62 7.48 -2.39 -0.02 -0.64 15 23 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 24 H 0.19 1.87 8.06 -2.91 -0.02 1.85 15 25 H 0.17 3.15 7.62 -2.91 -0.02 3.13 15 26 H 0.43 7.81 9.11 -74.05 -0.67 7.13 15 Total: -1.00 -81.30 242.43 5.13 -76.18 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: 0.55 Total: -2.13 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 1.97 Total: -17.49 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.28 Total: -60.43 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.45 Total: -39.92 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.74 Total: -5.98 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -81.30 5.13 -76.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307623480.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.647 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds