Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.38109 * 120.03752 * 99.72312 * 10 9 7 12 12 C 1.38282 * 120.07617 * 179.77274 * 11 10 9 13 13 C 1.50696 * 119.91581 * 180.23236 * 12 11 10 14 14 O 1.42899 * 109.47272 * 270.27227 * 13 12 11 15 15 C 1.38326 * 120.16160 * 0.50737 * 12 11 10 16 16 C 1.38059 * 120.07742 * 359.74934 * 15 12 11 17 17 C 1.38950 * 120.04293 * 280.00345 * 10 9 7 18 18 S 1.76197 * 120.07786 * 359.97438 * 17 10 9 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 21 21 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 22 22 H 1.08005 * 119.95702 * 0.02562 * 11 10 9 23 23 H 1.09003 * 109.47241 * 30.27653 * 13 12 11 24 24 H 1.08998 * 109.46971 * 150.27421 * 13 12 11 25 25 H 0.96698 * 114.00167 * 179.97438 * 14 13 12 26 26 H 1.08000 * 119.95390 * 179.72511 * 15 12 11 27 27 H 1.08001 * 120.03407 * 179.97438 * 16 15 12 28 28 H 1.34508 * 103.00183 * 90.00107 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.5261 -4.3013 1.1790 12 6 3.4210 -5.3556 1.1791 13 6 3.7371 -6.0729 2.4661 14 8 4.8450 -5.4368 3.1064 15 6 4.0310 -5.7495 0.0018 16 6 3.7441 -5.0943 -1.1791 17 6 2.8412 -4.0377 -1.1840 18 16 2.4720 -3.1985 -2.6887 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 0.8902 21 1 0.6248 -2.5571 -0.8897 22 1 2.0548 -3.9937 2.1008 23 1 2.8686 -6.0387 3.1239 24 1 3.9891 -7.1113 2.2508 25 1 5.1040 -5.8465 3.9431 26 1 4.7328 -6.5705 0.0065 27 1 4.2211 -5.4022 -2.0978 28 1 3.3894 -2.2152 -2.7197 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307630171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -54.494138 kcal Electronic energy + Delta-G solvation = -12840.290342 eV Core-core repulsion = 10560.182164 eV Total energy + Delta-G solvation = -2280.108178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39303 -37.59838 -35.50592 -33.28809 -32.43843 -29.07824 -26.97025 -25.34196 -23.06294 -21.52353 -18.81560 -18.56855 -18.33464 -16.98357 -16.75333 -16.56903 -15.88511 -14.88816 -14.71836 -14.57265 -14.24263 -13.85923 -13.37493 -13.03181 -12.93581 -12.62312 -12.47559 -12.25735 -11.66742 -11.61571 -11.34951 -10.92429 -10.60452 -9.77818 -9.52027 -8.79939 -8.21351 -6.32139 -0.02374 0.52589 0.93485 1.33408 1.34651 1.43097 1.92732 2.34687 2.74861 3.10341 3.61922 3.91216 4.07448 4.17111 4.35889 4.46758 4.57639 4.74072 4.87172 5.08621 5.19431 5.35756 5.37640 5.59381 5.73172 5.86231 5.99937 6.16008 6.76412 6.97005 7.33568 8.88617 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025517 B = 0.009077 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.064298 B = 3084.013786 C = 3724.797111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.518 4.518 8 H 0.038 0.962 9 C 0.055 3.945 10 C -0.029 4.029 11 C -0.129 4.129 12 C -0.073 4.073 13 C 0.120 3.880 14 O -0.590 6.590 15 C -0.124 4.124 16 C -0.073 4.073 17 C -0.125 4.125 18 S -0.132 6.132 19 H 0.266 0.734 20 H 0.003 0.997 21 H 0.029 0.971 22 H 0.118 0.882 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.400 0.600 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -13.172 2.459 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.017 3.983 10 C -0.032 4.032 11 C -0.149 4.149 12 C -0.073 4.073 13 C 0.043 3.957 14 O -0.400 6.400 15 C -0.143 4.143 16 C -0.093 4.093 17 C -0.237 4.237 18 S 0.026 5.974 19 H 0.075 0.925 20 H 0.021 0.979 21 H 0.048 0.952 22 H 0.136 0.864 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.251 0.749 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.724 -12.377 1.105 14.632 hybrid contribution 0.905 1.267 1.388 2.086 sum 8.629 -11.110 2.493 14.287 Atomic orbital electron populations 1.70041 1.07273 1.27847 1.50856 1.25714 0.95677 1.02303 0.94742 0.85699 0.78572 0.79230 0.78766 1.19941 1.19974 1.19559 1.21015 0.91972 0.91305 1.51345 0.94408 1.18217 0.92960 0.90208 0.96876 1.20840 0.95139 0.94423 0.92768 1.21071 1.00315 0.96459 0.97086 1.20168 0.95362 0.95440 0.96367 1.21066 0.89530 0.95188 0.89939 1.86546 1.51136 1.60470 1.41815 1.21296 1.00462 1.01613 0.90952 1.21790 0.94496 0.93206 0.99813 1.21324 1.05006 1.02142 0.95179 1.85160 1.51065 1.37248 1.23967 0.92502 0.97881 0.95236 0.86435 0.91713 0.89337 0.74914 0.82027 0.82665 0.96942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.29 21.45 0.28 -55.52 15 2 C 0.01 0.85 5.46 84.66 0.46 1.31 15 3 Si 0.95 45.31 29.54 68.60 2.03 47.33 15 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.52 -30.11 8.77 25.60 0.22 -29.89 15 8 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 9 C 0.05 2.97 4.55 29.10 0.13 3.11 15 10 C -0.03 -1.33 5.09 -19.72 -0.10 -1.43 15 11 C -0.13 -5.10 9.32 22.25 0.21 -4.90 15 12 C -0.07 -2.26 5.51 -19.83 -0.11 -2.37 15 13 C 0.12 2.62 7.17 71.23 0.51 3.13 15 14 O -0.59 -13.85 13.64 -148.98 -2.03 -15.89 15 15 C -0.12 -3.43 9.69 22.25 0.22 -3.22 15 16 C -0.07 -2.30 9.79 22.41 0.22 -2.08 15 17 C -0.12 -5.08 6.10 22.62 0.14 -4.94 15 18 S -0.13 -5.44 23.93 -56.49 -1.35 -6.79 15 19 H 0.27 15.16 8.31 -92.71 -0.77 14.38 15 20 H 0.00 0.17 8.01 -2.39 -0.02 0.15 15 21 H 0.03 1.71 7.25 -2.39 -0.02 1.69 15 22 H 0.12 4.60 8.04 -2.91 -0.02 4.58 15 23 H 0.06 1.28 8.09 -2.39 -0.02 1.26 15 24 H 0.09 1.31 8.08 -2.39 -0.02 1.30 15 25 H 0.40 4.68 9.12 -74.06 -0.68 4.01 15 26 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.16 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.07 2.83 9.07 73.35 0.67 3.50 15 Total: -1.00 -69.80 262.99 2.00 -67.80 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.17 Total: 4.35 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 1.90 Total: -41.28 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -2.03 Total: -15.89 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.35 Total: -6.79 kcal Total: -69.80 2.00 -67.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.305 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds