Wall clock time and date at job start Mon Mar 30 2020 02:49:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86808 * 119.99588 * 2 1
4 4 H 1.48508 * 109.46509 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47153 * 300.00300 * 3 2 1
6 6 H 1.48500 * 109.47030 * 60.00876 * 3 2 1
7 7 C 1.37869 * 120.00352 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00441 * 179.97438 * 7 2 1
9 9 C 1.50706 * 120.00092 * 359.97438 * 7 2 1
10 10 O 1.45200 * 109.47318 * 180.02562 * 9 7 2
11 11 C 1.34709 * 116.99923 * 179.97438 * 10 9 7
12 12 O 1.21472 * 119.99856 * 0.02562 * 11 10 9
13 13 C 1.47731 * 119.99822 * 179.97438 * 11 10 9
14 14 C 1.39642 * 120.13996 * 359.97438 * 13 11 10
15 15 C 1.37936 * 119.90096 * 180.02562 * 14 13 11
16 16 C 1.38342 * 120.17840 * 359.97438 * 15 14 13
17 17 C 1.38562 * 120.28166 * 0.02562 * 16 15 14
18 18 F 1.35101 * 119.95723 * 179.97438 * 17 16 15
19 19 C 1.38207 * 120.09563 * 359.97438 * 17 16 15
20 20 H 0.97000 * 120.00299 * 359.97438 * 1 2 3
21 21 H 1.09000 * 109.46828 * 59.99656 * 9 7 2
22 22 H 1.08997 * 109.47059 * 300.00150 * 9 7 2
23 23 H 1.08001 * 120.05067 * 359.97438 * 14 13 11
24 24 H 1.07999 * 119.91067 * 180.02562 * 15 14 13
25 25 H 1.08000 * 119.86103 * 179.97438 * 16 15 14
26 26 H 1.07999 * 120.09096 * 180.27883 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8902 2.3966 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0046 -1.1939 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 8 2.1947 -3.6027 -0.0005
11 6 1.6799 -4.8476 0.0000
12 8 0.4756 -5.0067 0.0000
13 6 2.5799 -6.0191 -0.0005
14 6 3.9647 -5.8394 -0.0021
15 6 4.8004 -6.9368 -0.0032
16 6 4.2704 -8.2146 -0.0021
17 6 2.8974 -8.4015 -0.0005
18 9 2.3869 -9.6524 0.0000
19 6 2.0494 -7.3102 0.0006
20 1 -0.4850 0.8400 0.0004
21 1 0.6241 -2.5567 -0.8903
22 1 0.6248 -2.5571 0.8896
23 1 4.3807 -4.8428 -0.0034
24 1 5.8715 -6.7980 -0.0040
25 1 4.9295 -9.0702 -0.0033
26 1 0.9793 -7.4560 0.0063
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000526915768.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:01
Heat of formation + Delta-G solvation = -114.544762 kcal
Electronic energy + Delta-G solvation = -14193.083794 eV
Core-core repulsion = 11344.158449 eV
Total energy + Delta-G solvation = -2848.925345 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-48.99781 -39.91995 -38.30642 -35.63146 -32.93489 -31.45704 -30.65570 -27.87197
-24.62655 -22.77580 -22.54911 -20.43211 -18.12142 -16.77189 -16.54100 -16.22907
-15.77404 -15.76697 -15.35036 -15.30031 -14.49362 -13.98799 -13.27931 -12.78583
-12.70409 -11.99994 -11.99896 -11.83065 -11.30109 -11.09450 -11.02471 -10.34924
-9.88817 -9.75715 -9.37515 -9.25381 -8.87089 -8.55899 -6.25733 -4.31528
0.63313 1.06485 2.83642 3.21540 3.25038 3.30446 3.41046 3.74201
4.16354 4.29775 4.67498 4.72348 5.07480 5.10706 5.14854 5.26152
5.68165 5.88667 5.97326 6.16968 6.25007 6.68214 6.79354 7.17000
7.37951 7.74793 7.95374 8.48232 8.79757 9.33280 10.85016
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.059737 B = 0.005432 C = 0.004992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.606547 B = 5153.829697 C = 5607.292130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.060 3.940
3 Si 0.915 3.085
4 H -0.269 1.269
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.529 4.529
8 H 0.073 0.927
9 C 0.204 3.796
10 O -0.350 6.350
11 C 0.494 3.506
12 O -0.512 6.512
13 C -0.083 4.083
14 C -0.072 4.072
15 C -0.105 4.105
16 C -0.130 4.130
17 C 0.084 3.916
18 F -0.138 7.138
19 C -0.097 4.097
20 H 0.268 0.732
21 H 0.031 0.969
22 H 0.031 0.969
23 H 0.150 0.850
24 H 0.140 0.860
25 H 0.138 0.862
26 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.234 -13.368 0.000 16.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.143 4.143
3 Si 0.741 3.259
4 H -0.193 1.193
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.567 4.567
8 H 0.091 0.909
9 C 0.134 3.866
10 O -0.266 6.266
11 C 0.337 3.663
12 O -0.404 6.404
13 C -0.084 4.084
14 C -0.090 4.090
15 C -0.123 4.123
16 C -0.149 4.149
17 C 0.064 3.936
18 F -0.117 7.117
19 C -0.116 4.116
20 H 0.077 0.923
21 H 0.049 0.951
22 H 0.049 0.951
23 H 0.168 0.832
24 H 0.158 0.842
25 H 0.156 0.844
26 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 8.689 -13.271 0.000 15.862
hybrid contribution 0.000 0.663 0.001 0.663
sum 8.689 -12.608 0.001 15.312
Atomic orbital electron populations
1.69987 1.06163 1.27600 1.49059 1.24966 0.95057 0.99574 0.94678
0.86173 0.79859 0.82006 0.77813 1.19325 1.20643 1.20639 1.21021
0.94307 0.88573 1.52818 0.90900 1.21021 0.87541 0.79824 0.98263
1.86489 1.43991 1.14433 1.81650 1.20915 0.86743 0.84662 0.73956
1.90795 1.16231 1.87343 1.45990 1.19212 0.93527 0.91287 1.04394
1.21704 0.91924 1.00738 0.94658 1.21037 1.00617 0.91072 0.99572
1.21358 0.93218 0.99102 1.01173 1.17444 0.91919 0.79301 1.04887
1.91510 1.87717 1.38326 1.94140 1.21247 1.01467 0.90247 0.98649
0.92267 0.95071 0.95082 0.83221 0.84183 0.84400 0.83324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 15
2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15
3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 15
4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15
5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15
6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15
7 C -0.53 -14.93 9.44 -34.44 -0.33 -15.25 15
8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 15
9 C 0.20 5.60 5.23 36.01 0.19 5.79 15
10 O -0.35 -8.20 9.46 -40.52 -0.38 -8.59 15
11 C 0.49 10.40 7.90 34.61 0.27 10.68 15
12 O -0.51 -12.16 16.14 -19.24 -0.31 -12.47 15
13 C -0.08 -1.34 5.87 -104.99 -0.62 -1.96 15
14 C -0.07 -0.95 9.62 -39.17 -0.38 -1.33 15
15 C -0.10 -1.06 10.03 -39.65 -0.40 -1.46 15
16 C -0.13 -1.32 10.02 -39.42 -0.39 -1.71 15
17 C 0.08 1.04 7.29 -39.47 -0.29 0.76 15
18 F -0.14 -1.74 17.26 2.25 0.04 -1.70 15
19 C -0.10 -1.41 9.57 -39.09 -0.37 -1.79 15
20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15
21 H 0.03 0.91 8.14 -51.93 -0.42 0.48 15
22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15
23 H 0.15 1.94 7.61 -52.49 -0.40 1.54 15
24 H 0.14 0.97 8.06 -52.49 -0.42 0.55 15
25 H 0.14 1.02 8.06 -52.49 -0.42 0.59 15
26 H 0.15 2.18 7.65 -52.49 -0.40 1.78 15
LS Contribution 251.20 15.07 3.79 3.79
Total: -1.00 -31.04 251.20 -5.60 -36.64
By element:
Atomic # 1 Polarization: -1.45 SS G_CDS: -2.04 Total: -3.49 kcal
Atomic # 6 Polarization: -2.28 SS G_CDS: -2.41 Total: -4.69 kcal
Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.45 kcal
Atomic # 8 Polarization: -20.37 SS G_CDS: -0.69 Total: -21.06 kcal
Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 3.79 Total: 3.79 kcal
Total: -31.04 -5.60 -36.64 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000526915768.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.901 kcal
(2) G-P(sol) polarization free energy of solvation -31.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds