Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99588 * 2 1 4 4 H 1.48508 * 109.46509 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47153 * 300.00300 * 3 2 1 6 6 H 1.48500 * 109.47030 * 60.00876 * 3 2 1 7 7 C 1.37869 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00092 * 359.97438 * 7 2 1 10 10 O 1.45200 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.34709 * 116.99923 * 179.97438 * 10 9 7 12 12 O 1.21472 * 119.99856 * 0.02562 * 11 10 9 13 13 C 1.47731 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.39642 * 120.13996 * 359.97438 * 13 11 10 15 15 C 1.37936 * 119.90096 * 180.02562 * 14 13 11 16 16 C 1.38342 * 120.17840 * 359.97438 * 15 14 13 17 17 C 1.38562 * 120.28166 * 0.02562 * 16 15 14 18 18 F 1.35101 * 119.95723 * 179.97438 * 17 16 15 19 19 C 1.38207 * 120.09563 * 359.97438 * 17 16 15 20 20 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46828 * 59.99656 * 9 7 2 22 22 H 1.08997 * 109.47059 * 300.00150 * 9 7 2 23 23 H 1.08001 * 120.05067 * 359.97438 * 14 13 11 24 24 H 1.07999 * 119.91067 * 180.02562 * 15 14 13 25 25 H 1.08000 * 119.86103 * 179.97438 * 16 15 14 26 26 H 1.07999 * 120.09096 * 180.27883 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1947 -3.6027 -0.0005 11 6 1.6799 -4.8476 0.0000 12 8 0.4756 -5.0067 0.0000 13 6 2.5799 -6.0191 -0.0005 14 6 3.9647 -5.8394 -0.0021 15 6 4.8004 -6.9368 -0.0032 16 6 4.2704 -8.2146 -0.0021 17 6 2.8974 -8.4015 -0.0005 18 9 2.3869 -9.6524 0.0000 19 6 2.0494 -7.3102 0.0006 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 4.3807 -4.8428 -0.0034 24 1 5.8715 -6.7980 -0.0040 25 1 4.9295 -9.0702 -0.0033 26 1 0.9793 -7.4560 0.0063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526915768.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -114.544762 kcal Electronic energy + Delta-G solvation = -14193.083794 eV Core-core repulsion = 11344.158449 eV Total energy + Delta-G solvation = -2848.925345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.99781 -39.91995 -38.30642 -35.63146 -32.93489 -31.45704 -30.65570 -27.87197 -24.62655 -22.77580 -22.54911 -20.43211 -18.12142 -16.77189 -16.54100 -16.22907 -15.77404 -15.76697 -15.35036 -15.30031 -14.49362 -13.98799 -13.27931 -12.78583 -12.70409 -11.99994 -11.99896 -11.83065 -11.30109 -11.09450 -11.02471 -10.34924 -9.88817 -9.75715 -9.37515 -9.25381 -8.87089 -8.55899 -6.25733 -4.31528 0.63313 1.06485 2.83642 3.21540 3.25038 3.30446 3.41046 3.74201 4.16354 4.29775 4.67498 4.72348 5.07480 5.10706 5.14854 5.26152 5.68165 5.88667 5.97326 6.16968 6.25007 6.68214 6.79354 7.17000 7.37951 7.74793 7.95374 8.48232 8.79757 9.33280 10.85016 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.059737 B = 0.005432 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.606547 B = 5153.829697 C = 5607.292130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.204 3.796 10 O -0.350 6.350 11 C 0.494 3.506 12 O -0.512 6.512 13 C -0.083 4.083 14 C -0.072 4.072 15 C -0.105 4.105 16 C -0.130 4.130 17 C 0.084 3.916 18 F -0.138 7.138 19 C -0.097 4.097 20 H 0.268 0.732 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.150 0.850 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 -13.368 0.000 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.134 3.866 10 O -0.266 6.266 11 C 0.337 3.663 12 O -0.404 6.404 13 C -0.084 4.084 14 C -0.090 4.090 15 C -0.123 4.123 16 C -0.149 4.149 17 C 0.064 3.936 18 F -0.117 7.117 19 C -0.116 4.116 20 H 0.077 0.923 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.168 0.832 24 H 0.158 0.842 25 H 0.156 0.844 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.689 -13.271 0.000 15.862 hybrid contribution 0.000 0.663 0.001 0.663 sum 8.689 -12.608 0.001 15.312 Atomic orbital electron populations 1.69987 1.06163 1.27600 1.49059 1.24966 0.95057 0.99574 0.94678 0.86173 0.79859 0.82006 0.77813 1.19325 1.20643 1.20639 1.21021 0.94307 0.88573 1.52818 0.90900 1.21021 0.87541 0.79824 0.98263 1.86489 1.43991 1.14433 1.81650 1.20915 0.86743 0.84662 0.73956 1.90795 1.16231 1.87343 1.45990 1.19212 0.93527 0.91287 1.04394 1.21704 0.91924 1.00738 0.94658 1.21037 1.00617 0.91072 0.99572 1.21358 0.93218 0.99102 1.01173 1.17444 0.91919 0.79301 1.04887 1.91510 1.87717 1.38326 1.94140 1.21247 1.01467 0.90247 0.98649 0.92267 0.95071 0.95082 0.83221 0.84183 0.84400 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.53 -14.93 9.44 -34.44 -0.33 -15.25 15 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 15 9 C 0.20 5.60 5.23 36.01 0.19 5.79 15 10 O -0.35 -8.20 9.46 -40.52 -0.38 -8.59 15 11 C 0.49 10.40 7.90 34.61 0.27 10.68 15 12 O -0.51 -12.16 16.14 -19.24 -0.31 -12.47 15 13 C -0.08 -1.34 5.87 -104.99 -0.62 -1.96 15 14 C -0.07 -0.95 9.62 -39.17 -0.38 -1.33 15 15 C -0.10 -1.06 10.03 -39.65 -0.40 -1.46 15 16 C -0.13 -1.32 10.02 -39.42 -0.39 -1.71 15 17 C 0.08 1.04 7.29 -39.47 -0.29 0.76 15 18 F -0.14 -1.74 17.26 2.25 0.04 -1.70 15 19 C -0.10 -1.41 9.57 -39.09 -0.37 -1.79 15 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.03 0.91 8.14 -51.93 -0.42 0.48 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.15 1.94 7.61 -52.49 -0.40 1.54 15 24 H 0.14 0.97 8.06 -52.49 -0.42 0.55 15 25 H 0.14 1.02 8.06 -52.49 -0.42 0.59 15 26 H 0.15 2.18 7.65 -52.49 -0.40 1.78 15 LS Contribution 251.20 15.07 3.79 3.79 Total: -1.00 -31.04 251.20 -5.60 -36.64 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -2.04 Total: -3.49 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.41 Total: -4.69 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.45 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.69 Total: -21.06 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.04 -5.60 -36.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526915768.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.901 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds