Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29462 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99879 * 3 2 1 5 5 H 1.48497 * 109.46809 * 30.00022 * 3 2 1 6 6 H 1.48501 * 109.46714 * 150.00376 * 3 2 1 7 7 C 1.46681 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99792 * 168.40059 * 7 2 1 9 9 C 1.38986 * 120.00095 * 348.39033 * 7 2 1 10 10 C 1.46911 * 120.53131 * 317.62765 * 9 7 2 11 11 O 1.35315 * 120.53745 * 359.97277 * 10 9 7 12 12 C 1.37914 * 118.93020 * 179.70131 * 10 9 7 13 13 C 1.39363 * 119.99106 * 0.27584 * 12 10 9 14 14 N 1.37808 * 119.44038 * 179.97438 * 13 12 10 15 15 C 1.40325 * 121.11171 * 0.02562 * 13 12 10 16 16 C 1.35433 * 121.11179 * 0.02562 * 15 13 12 17 17 N 1.48019 * 120.04306 * 179.97438 * 16 15 13 18 18 O 1.31698 * 120.00139 * 354.03204 * 17 16 15 19 19 O 1.31697 * 120.00150 * 174.03812 * 17 16 15 20 20 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00573 * 264.86748 * 11 10 9 22 22 H 1.07997 * 120.00392 * 180.25100 * 12 10 9 23 23 H 0.96999 * 119.99895 * 0.02562 * 14 13 12 24 24 H 0.96991 * 119.99987 * 179.97438 * 14 13 12 25 25 H 1.08007 * 119.44480 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.4761 2.0464 -1.4001 5 1 1.4260 2.6526 0.7000 6 1 3.5262 1.4401 0.7000 7 6 2.0280 -1.2703 -0.0006 8 1 3.0914 -1.2798 -0.1886 9 6 1.3543 -2.4618 0.2411 10 6 0.3399 -2.5439 1.3006 11 8 0.0467 -1.4610 2.0572 12 6 -0.3129 -3.7410 1.5079 13 6 -0.0020 -4.8492 0.7221 14 7 -0.6608 -6.0399 0.9394 15 6 0.9714 -4.7732 -0.2858 16 6 1.6405 -3.6207 -0.5271 17 7 2.6630 -3.5673 -1.5960 18 8 3.0071 -4.6670 -2.2337 19 8 3.2289 -2.4201 -1.9093 20 1 -0.4850 0.8400 0.0004 21 1 0.5297 -1.4234 2.8941 22 1 -1.0645 -3.8197 2.2793 23 1 -1.3348 -6.1014 1.6342 24 1 -0.4511 -6.8161 0.3970 25 1 1.1913 -5.6489 -0.8786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718201.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -1.673914 kcal Electronic energy + Delta-G solvation = -15220.277692 eV Core-core repulsion = 12396.166756 eV Total energy + Delta-G solvation = -2824.110936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.75772 -36.77507 -36.05095 -34.32644 -32.81792 -32.30512 -29.47210 -28.97380 -25.51687 -23.92572 -21.43539 -20.57447 -18.28239 -17.53333 -16.71642 -16.01342 -15.70632 -15.26035 -14.75660 -14.24310 -13.99409 -13.61785 -13.34400 -12.68596 -11.97028 -11.74601 -11.57871 -11.43766 -10.95098 -10.58602 -9.92623 -9.77734 -9.34105 -9.22786 -8.93206 -8.82769 -8.04166 -7.54139 -6.92928 -4.69944 1.04497 2.41302 2.74940 2.82142 2.87189 2.94613 3.26579 3.55945 4.06269 4.62260 4.75508 5.17008 5.75034 6.07059 6.21560 6.41228 6.48756 6.80661 6.97460 7.17314 7.24031 7.55499 7.89394 7.97994 8.08728 8.26863 8.42577 8.67235 8.97666 9.39319 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.013106 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.319907 B = 2135.865642 C = 3104.387272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.678 5.678 2 C 0.059 3.941 3 Si 0.934 3.066 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.308 4.308 8 H 0.121 0.879 9 C 0.057 3.943 10 C 0.123 3.877 11 O -0.464 6.464 12 C -0.169 4.169 13 C 0.132 3.868 14 N -0.881 5.881 15 C -0.141 4.141 16 C -0.055 4.055 17 N 0.039 4.961 18 O -0.372 6.372 19 O -0.294 6.294 20 H 0.303 0.697 21 H 0.365 0.635 22 H 0.114 0.886 23 H 0.388 0.612 24 H 0.390 0.610 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 0.743 7.699 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.298 5.298 2 C -0.175 4.175 3 Si 0.755 3.245 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.336 4.336 8 H 0.138 0.862 9 C 0.051 3.949 10 C 0.075 3.925 11 O -0.271 6.271 12 C -0.191 4.191 13 C 0.028 3.972 14 N -0.425 5.425 15 C -0.167 4.167 16 C -0.160 4.160 17 N 0.449 4.551 18 O -0.509 6.509 19 O -0.449 6.449 20 H 0.116 0.884 21 H 0.219 0.781 22 H 0.132 0.868 23 H 0.215 0.785 24 H 0.217 0.783 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.524 0.924 7.281 8.622 hybrid contribution 0.484 0.145 0.119 0.519 sum -4.039 1.070 7.400 8.498 Atomic orbital electron populations 1.68970 1.09154 1.32369 1.19277 1.27802 0.94849 1.02582 0.92315 0.85849 0.80573 0.77471 0.80587 1.18132 1.19430 1.17290 1.21688 0.97543 0.89017 1.25397 0.86159 1.18366 0.92152 0.91936 0.92495 1.19317 0.95915 0.84775 0.92475 1.84818 1.66084 1.43035 1.33132 1.20705 1.03031 0.92475 1.02840 1.16615 0.96295 0.86838 0.97454 1.41582 1.46896 1.10617 1.43360 1.19213 0.99244 0.97565 1.00659 1.19020 1.01900 0.98013 0.97023 1.49509 1.02142 1.01015 1.02408 1.96043 1.74309 1.20714 1.59856 1.96039 1.58341 1.13380 1.77125 0.88446 0.78110 0.86837 0.78530 0.78313 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -15.03 11.12 55.99 0.62 -14.41 15 2 C 0.06 1.28 4.90 -15.14 -0.07 1.21 15 3 Si 0.93 16.41 29.66 -169.99 -5.04 11.37 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -4.42 7.11 56.52 0.40 -4.02 15 6 H -0.25 -4.34 7.11 56.52 0.40 -3.94 15 7 C -0.31 -7.56 7.43 -35.90 -0.27 -7.82 15 8 H 0.12 3.06 6.35 -52.49 -0.33 2.72 15 9 C 0.06 1.41 5.52 -104.69 -0.58 0.83 15 10 C 0.12 2.63 6.35 -36.19 -0.23 2.40 15 11 O -0.46 -8.87 10.69 -17.64 -0.19 -9.06 15 12 C -0.17 -3.27 9.78 -39.28 -0.38 -3.65 15 13 C 0.13 2.59 6.74 -83.97 -0.57 2.03 15 14 N -0.88 -13.15 8.99 32.42 0.29 -12.86 15 15 C -0.14 -3.28 9.29 -39.80 -0.37 -3.65 15 16 C -0.06 -1.45 6.89 -79.52 -0.55 -2.00 15 17 N 0.04 1.14 4.98 34.17 0.17 1.31 15 18 O -0.37 -11.17 19.11 -31.57 -0.60 -11.77 15 19 O -0.29 -8.76 16.45 -31.57 -0.52 -9.28 15 20 H 0.30 5.90 8.27 -40.82 -0.34 5.56 15 21 H 0.37 5.17 9.06 45.56 0.41 5.58 15 22 H 0.11 1.86 8.06 -52.49 -0.42 1.44 15 23 H 0.39 4.71 8.80 -40.82 -0.36 4.35 15 24 H 0.39 5.22 8.80 -40.82 -0.36 4.86 15 25 H 0.12 2.66 7.50 -52.48 -0.39 2.27 15 LS Contribution 236.05 15.07 3.56 3.56 Total: -1.00 -31.93 236.05 -5.32 -37.25 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.59 Total: 14.56 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.02 Total: -10.66 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 1.08 Total: -25.96 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.31 Total: -30.11 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.04 Total: 11.37 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.93 -5.32 -37.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718201.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.574 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds