Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29462 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99879 * 3 2 1 5 5 H 1.48497 * 109.46809 * 30.00022 * 3 2 1 6 6 H 1.48501 * 109.46714 * 150.00376 * 3 2 1 7 7 C 1.46681 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99792 * 168.40059 * 7 2 1 9 9 C 1.38986 * 120.00095 * 348.39033 * 7 2 1 10 10 C 1.46911 * 120.53131 * 317.62765 * 9 7 2 11 11 O 1.35315 * 120.53745 * 359.97277 * 10 9 7 12 12 C 1.37914 * 118.93020 * 179.70131 * 10 9 7 13 13 C 1.39363 * 119.99106 * 0.27584 * 12 10 9 14 14 N 1.37808 * 119.44038 * 179.97438 * 13 12 10 15 15 C 1.40325 * 121.11171 * 0.02562 * 13 12 10 16 16 C 1.35433 * 121.11179 * 0.02562 * 15 13 12 17 17 N 1.48019 * 120.04306 * 179.97438 * 16 15 13 18 18 O 1.31698 * 120.00139 * 354.03204 * 17 16 15 19 19 O 1.31697 * 120.00150 * 174.03812 * 17 16 15 20 20 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00573 * 264.86748 * 11 10 9 22 22 H 1.07997 * 120.00392 * 180.25100 * 12 10 9 23 23 H 0.96999 * 119.99895 * 0.02562 * 14 13 12 24 24 H 0.96991 * 119.99987 * 179.97438 * 14 13 12 25 25 H 1.08007 * 119.44480 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.4761 2.0464 -1.4001 5 1 1.4260 2.6526 0.7000 6 1 3.5262 1.4401 0.7000 7 6 2.0280 -1.2703 -0.0006 8 1 3.0914 -1.2798 -0.1886 9 6 1.3543 -2.4618 0.2411 10 6 0.3399 -2.5439 1.3006 11 8 0.0467 -1.4610 2.0572 12 6 -0.3129 -3.7410 1.5079 13 6 -0.0020 -4.8492 0.7221 14 7 -0.6608 -6.0399 0.9394 15 6 0.9714 -4.7732 -0.2858 16 6 1.6405 -3.6207 -0.5271 17 7 2.6630 -3.5673 -1.5960 18 8 3.0071 -4.6670 -2.2337 19 8 3.2289 -2.4201 -1.9093 20 1 -0.4850 0.8400 0.0004 21 1 0.5297 -1.4234 2.8941 22 1 -1.0645 -3.8197 2.2793 23 1 -1.3348 -6.1014 1.6342 24 1 -0.4511 -6.8161 0.3970 25 1 1.1913 -5.6489 -0.8786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718201.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -28.099480 kcal Electronic energy + Delta-G solvation = -15221.423590 eV Core-core repulsion = 12396.166756 eV Total energy + Delta-G solvation = -2825.256835 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51248 -38.42762 -37.69850 -36.21963 -34.53871 -34.03480 -31.14285 -30.82941 -27.32793 -25.78323 -23.18871 -22.29755 -20.14251 -19.20501 -18.36506 -17.70409 -17.48435 -16.89040 -16.36186 -15.92431 -15.73272 -15.27976 -14.99922 -14.29131 -13.75649 -13.48540 -13.24734 -13.12959 -12.54629 -12.02306 -11.63357 -11.48841 -11.10086 -10.99950 -10.92741 -10.66207 -9.77522 -9.39695 -8.63534 -6.65315 -0.94454 0.69401 0.97678 1.32416 1.46258 1.52390 1.61773 2.08394 2.29366 2.93497 3.14835 3.51355 4.19125 4.30641 4.34412 4.60840 4.85295 5.07041 5.23945 5.41176 5.60907 5.65025 5.86937 6.03145 6.36602 6.71272 7.10592 7.19467 7.23453 7.55030 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.013106 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.319907 B = 2135.865642 C = 3104.387272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.016 3.984 3 Si 1.003 2.997 4 H -0.270 1.270 5 H -0.230 1.230 6 H -0.248 1.248 7 C -0.226 4.226 8 H 0.105 0.895 9 C -0.014 4.014 10 C 0.167 3.833 11 O -0.465 6.465 12 C -0.179 4.179 13 C 0.211 3.789 14 N -0.848 5.848 15 C -0.233 4.233 16 C -0.017 4.017 17 N 0.015 4.985 18 O -0.506 6.506 19 O -0.428 6.428 20 H 0.329 0.671 21 H 0.398 0.602 22 H 0.167 0.833 23 H 0.412 0.588 24 H 0.403 0.597 25 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 3.568 12.665 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.218 4.218 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.152 1.152 6 H -0.171 1.171 7 C -0.257 4.257 8 H 0.122 0.878 9 C -0.020 4.020 10 C 0.118 3.882 11 O -0.276 6.276 12 C -0.201 4.201 13 C 0.101 3.899 14 N -0.391 5.391 15 C -0.260 4.260 16 C -0.133 4.133 17 N 0.373 4.627 18 O -0.609 6.609 19 O -0.545 6.545 20 H 0.143 0.857 21 H 0.257 0.743 22 H 0.184 0.816 23 H 0.243 0.757 24 H 0.231 0.769 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.556 3.668 12.012 15.197 hybrid contribution 1.022 -0.291 -0.582 1.211 sum -7.535 3.376 11.430 14.100 Atomic orbital electron populations 1.68869 1.10006 1.35396 1.14074 1.28707 0.95895 1.04460 0.92758 0.84872 0.79730 0.73175 0.80284 1.19466 1.15184 1.17115 1.22503 0.97404 0.91062 1.14717 0.87754 1.18948 0.95608 0.92041 0.95445 1.19286 0.92226 0.85967 0.90695 1.84712 1.66319 1.41958 1.34598 1.21077 1.03903 0.90989 1.04084 1.16868 0.91909 0.88189 0.92949 1.41728 1.45186 1.09384 1.42837 1.19111 1.04314 0.97221 1.05402 1.19601 0.99181 0.98896 0.95589 1.49252 1.06718 1.00093 1.06681 1.95887 1.78724 1.21689 1.64561 1.95850 1.62778 1.14262 1.81604 0.85653 0.74330 0.81576 0.75707 0.76851 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -25.82 11.12 23.24 0.26 -25.57 15 2 C 0.02 0.64 4.90 87.25 0.43 1.07 15 3 Si 1.00 30.02 29.66 68.60 2.03 32.06 15 4 H -0.27 -8.80 7.11 99.48 0.71 -8.09 15 5 H -0.23 -5.57 7.11 99.48 0.71 -4.86 15 6 H -0.25 -7.44 7.11 99.48 0.71 -6.74 15 7 C -0.23 -10.94 7.43 24.66 0.18 -10.75 15 8 H 0.10 5.52 6.35 -2.91 -0.02 5.50 15 9 C -0.01 -0.70 5.52 -19.91 -0.11 -0.81 15 10 C 0.17 6.32 6.35 24.47 0.16 6.48 15 11 O -0.47 -14.42 10.69 -86.02 -0.92 -15.34 15 12 C -0.18 -5.82 9.78 22.46 0.22 -5.60 15 13 C 0.21 7.58 6.74 38.98 0.26 7.84 15 14 N -0.85 -21.05 8.99 -51.35 -0.46 -21.51 15 15 C -0.23 -11.25 9.29 22.13 0.21 -11.04 15 16 C -0.02 -0.94 6.89 36.65 0.25 -0.69 15 17 N 0.01 0.98 4.98 -45.81 -0.23 0.75 15 18 O -0.51 -35.98 19.11 3.52 0.07 -35.91 15 19 O -0.43 -29.33 16.45 3.52 0.06 -29.28 15 20 H 0.33 10.62 8.27 -92.71 -0.77 9.86 15 21 H 0.40 8.07 9.06 -74.06 -0.67 7.40 15 22 H 0.17 3.86 8.06 -2.91 -0.02 3.83 15 23 H 0.41 7.06 8.80 -92.71 -0.82 6.25 15 24 H 0.40 9.30 8.80 -92.71 -0.82 8.48 15 25 H 0.10 5.10 7.50 -2.91 -0.02 5.07 15 Total: -1.00 -82.99 236.05 1.39 -81.59 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -1.01 Total: 26.71 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 1.60 Total: -13.51 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.43 Total: -46.32 kcal Atomic # 8 Polarization: -79.74 SS G_CDS: -0.79 Total: -80.53 kcal Atomic # 14 Polarization: 30.02 SS G_CDS: 2.03 Total: 32.06 kcal Total: -82.99 1.39 -81.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718201.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.493 kcal (2) G-P(sol) polarization free energy of solvation -82.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds