Wall clock time and date at job start Mon Mar 30 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46920 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00333 * 3 2 1 7 7 C 1.46554 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00153 * 192.36793 * 7 2 1 9 9 C 1.39488 * 119.99556 * 12.36539 * 7 2 1 10 10 C 1.41817 * 120.15857 * 25.97680 * 9 7 2 11 11 C 1.35851 * 119.89557 * 180.25111 * 10 9 7 12 12 C 1.40067 * 120.23048 * 359.45867 * 11 10 9 13 13 N 1.37695 * 119.83937 * 180.25803 * 12 11 10 14 14 C 1.40716 * 120.31845 * 0.27763 * 12 11 10 15 15 O 1.35938 * 119.95027 * 180.02562 * 14 12 11 16 16 C 1.36177 * 120.09974 * 359.97438 * 14 12 11 17 17 N 1.48018 * 120.11914 * 180.02562 * 16 14 12 18 18 O 1.31698 * 119.99723 * 90.00018 * 17 16 14 19 19 O 1.31699 * 120.00113 * 270.00418 * 17 16 14 20 20 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.05298 * 359.97438 * 10 9 7 22 22 H 1.07999 * 119.88642 * 179.73643 * 11 10 9 23 23 H 0.97003 * 120.00027 * 359.97438 * 13 12 11 24 24 H 0.96996 * 119.99536 * 180.02562 * 13 12 11 25 25 H 0.96697 * 114.00151 * 89.99812 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 3.6891 1.3464 -0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8705 2.3964 1.2125 7 6 2.0279 -1.2692 -0.0006 8 1 3.0891 -1.2801 0.1997 9 6 1.3547 -2.4630 -0.2598 10 6 0.1669 -2.4574 -1.0346 11 6 -0.4873 -3.6226 -1.2795 12 6 0.0134 -4.8311 -0.7790 13 7 -0.6533 -6.0081 -1.0366 14 6 1.1942 -4.8483 -0.0138 15 8 1.6738 -6.0255 0.4679 16 6 1.8579 -3.6874 0.2440 17 7 3.1003 -3.7050 1.0484 18 8 4.2668 -3.8525 0.4550 19 8 3.0393 -3.5733 2.3574 20 1 -0.4850 0.8401 0.0004 21 1 -0.2195 -1.5277 -1.4255 22 1 -1.3942 -3.6176 -1.8659 23 1 -1.4678 -5.9988 -1.5632 24 1 -0.3087 -6.8462 -0.6907 25 1 2.2882 -6.4737 -0.1293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718373.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:46 Heat of formation + Delta-G solvation = -5.401238 kcal Electronic energy + Delta-G solvation = -15160.860268 eV Core-core repulsion = 12336.587703 eV Total energy + Delta-G solvation = -2824.272565 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.25714 -37.28261 -36.18523 -34.53107 -33.17211 -32.98473 -29.92957 -28.69108 -25.72041 -24.19262 -21.46898 -20.89872 -18.56334 -17.33790 -17.11490 -16.89292 -16.39444 -15.41271 -14.79662 -14.60866 -14.28428 -13.45128 -13.26041 -12.47943 -12.12930 -11.80148 -11.49962 -11.04323 -10.81257 -10.64130 -10.33404 -10.26286 -9.99279 -9.70524 -9.59341 -9.36544 -8.14702 -7.38642 -7.02741 -4.67006 1.03696 2.06460 2.41041 2.58351 2.84414 2.90472 2.92370 3.60265 4.02909 4.68336 4.81047 4.97299 5.84833 6.19150 6.28486 6.47609 6.52921 6.78429 6.92572 7.18654 7.39972 7.45674 7.88959 7.90233 8.00379 8.13216 8.24021 8.44823 8.50983 9.53567 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.011629 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.776179 B = 2407.160142 C = 3219.324769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.077 3.923 3 Si 0.927 3.073 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.123 3.877 10 C -0.113 4.113 11 C -0.128 4.128 12 C 0.081 3.919 13 N -0.879 5.879 14 C 0.094 3.906 15 O -0.499 6.499 16 C -0.140 4.140 17 N 0.023 4.977 18 O -0.202 6.202 19 O -0.170 6.170 20 H 0.297 0.703 21 H 0.141 0.859 22 H 0.110 0.890 23 H 0.389 0.611 24 H 0.389 0.611 25 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -1.949 -4.374 5.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.150 4.150 3 Si 0.749 3.251 4 H -0.174 1.174 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.474 4.474 8 H 0.105 0.895 9 C 0.118 3.882 10 C -0.133 4.133 11 C -0.150 4.150 12 C -0.020 4.020 13 N -0.422 5.422 14 C 0.043 3.957 15 O -0.306 6.306 16 C -0.224 4.224 17 N 0.516 4.484 18 O -0.401 6.401 19 O -0.378 6.378 20 H 0.109 0.891 21 H 0.158 0.842 22 H 0.128 0.872 23 H 0.216 0.784 24 H 0.216 0.784 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.806 -1.572 -4.304 5.956 hybrid contribution 0.744 0.188 -0.141 0.781 sum -3.062 -1.384 -4.444 5.571 Atomic orbital electron populations 1.69056 1.08837 1.31389 1.27627 1.27496 0.94691 1.02343 0.90518 0.85913 0.81505 0.78437 0.79229 1.17414 1.18880 1.18995 1.20682 0.96445 0.89660 1.40659 0.89506 1.16895 0.92362 0.88907 0.90048 1.21070 0.95853 0.97488 0.98900 1.20246 1.00321 0.91289 1.03116 1.17186 0.94725 0.87562 1.02566 1.41302 1.30585 1.06184 1.64165 1.16564 0.94635 0.82537 1.01996 1.84886 1.64866 1.34393 1.46485 1.19714 0.91405 0.97136 1.14148 1.50162 1.03957 0.92059 1.02242 1.96134 1.15221 1.55266 1.73486 1.96154 1.95964 1.53547 0.92156 0.89079 0.84154 0.87234 0.78442 0.78369 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.99 10.86 55.99 0.61 -16.38 15 2 C 0.08 1.78 5.40 -15.18 -0.08 1.70 15 3 Si 0.93 17.31 29.66 -169.99 -5.04 12.27 15 4 H -0.25 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.45 -11.65 8.93 -35.77 -0.32 -11.97 15 8 H 0.09 2.35 7.62 -52.49 -0.40 1.95 15 9 C 0.12 3.18 5.61 -106.77 -0.60 2.58 15 10 C -0.11 -2.63 8.68 -39.07 -0.34 -2.97 15 11 C -0.13 -2.62 9.81 -39.75 -0.39 -3.01 15 12 C 0.08 1.67 6.79 -83.61 -0.57 1.10 15 13 N -0.88 -13.90 8.98 32.61 0.29 -13.61 15 14 C 0.09 2.16 6.68 -39.39 -0.26 1.90 15 15 O -0.50 -10.35 12.42 -19.55 -0.24 -10.60 15 16 C -0.14 -3.62 6.27 -79.39 -0.50 -4.12 15 17 N 0.02 0.61 3.77 34.23 0.13 0.74 15 18 O -0.20 -5.27 19.97 -31.57 -0.63 -5.90 15 19 O -0.17 -4.65 19.97 -31.57 -0.63 -5.29 15 20 H 0.30 5.87 8.27 -40.82 -0.34 5.54 15 21 H 0.14 3.20 6.08 -52.49 -0.32 2.88 15 22 H 0.11 1.88 8.06 -52.49 -0.42 1.45 15 23 H 0.39 5.06 8.81 -40.82 -0.36 4.70 15 24 H 0.39 5.67 8.14 -40.82 -0.33 5.34 15 25 H 0.37 6.10 9.06 45.56 0.41 6.51 15 LS Contribution 241.16 15.07 3.63 3.63 Total: -1.00 -29.20 241.16 -5.49 -34.69 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.55 Total: 15.23 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.06 Total: -14.79 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 1.03 Total: -29.25 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.50 Total: -21.78 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.04 Total: 12.27 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.20 -5.49 -34.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718373.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.287 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds