Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46920 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00333 * 3 2 1 7 7 C 1.46554 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00153 * 192.36793 * 7 2 1 9 9 C 1.39488 * 119.99556 * 12.36539 * 7 2 1 10 10 C 1.41817 * 120.15857 * 25.97680 * 9 7 2 11 11 C 1.35851 * 119.89557 * 180.25111 * 10 9 7 12 12 C 1.40067 * 120.23048 * 359.45867 * 11 10 9 13 13 N 1.37695 * 119.83937 * 180.25803 * 12 11 10 14 14 C 1.40716 * 120.31845 * 0.27763 * 12 11 10 15 15 O 1.35938 * 119.95027 * 180.02562 * 14 12 11 16 16 C 1.36177 * 120.09974 * 359.97438 * 14 12 11 17 17 N 1.48018 * 120.11914 * 180.02562 * 16 14 12 18 18 O 1.31698 * 119.99723 * 90.00018 * 17 16 14 19 19 O 1.31699 * 120.00113 * 270.00418 * 17 16 14 20 20 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.05298 * 359.97438 * 10 9 7 22 22 H 1.07999 * 119.88642 * 179.73643 * 11 10 9 23 23 H 0.97003 * 120.00027 * 359.97438 * 13 12 11 24 24 H 0.96996 * 119.99536 * 180.02562 * 13 12 11 25 25 H 0.96697 * 114.00151 * 89.99812 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 3.6891 1.3464 -0.0006 5 1 1.8703 2.3964 -1.2126 6 1 1.8705 2.3964 1.2125 7 6 2.0279 -1.2692 -0.0006 8 1 3.0891 -1.2801 0.1997 9 6 1.3547 -2.4630 -0.2598 10 6 0.1669 -2.4574 -1.0346 11 6 -0.4873 -3.6226 -1.2795 12 6 0.0134 -4.8311 -0.7790 13 7 -0.6533 -6.0081 -1.0366 14 6 1.1942 -4.8483 -0.0138 15 8 1.6738 -6.0255 0.4679 16 6 1.8579 -3.6874 0.2440 17 7 3.1003 -3.7050 1.0484 18 8 4.2668 -3.8525 0.4550 19 8 3.0393 -3.5733 2.3574 20 1 -0.4850 0.8401 0.0004 21 1 -0.2195 -1.5277 -1.4255 22 1 -1.3942 -3.6176 -1.8659 23 1 -1.4678 -5.9988 -1.5632 24 1 -0.3087 -6.8462 -0.6907 25 1 2.2882 -6.4737 -0.1293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718373.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -27.117735 kcal Electronic energy + Delta-G solvation = -15161.801966 eV Core-core repulsion = 12336.587703 eV Total energy + Delta-G solvation = -2825.214263 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02208 -39.26310 -37.88385 -36.18285 -35.27807 -34.66074 -31.69260 -30.43726 -27.61008 -25.98881 -23.22474 -22.69976 -20.30490 -19.20094 -19.13869 -18.60491 -18.11501 -17.03629 -16.44923 -16.34194 -16.02471 -15.08058 -14.99470 -14.15599 -13.84272 -13.47480 -13.01031 -12.72947 -12.63264 -12.43334 -12.26527 -12.06724 -11.73015 -11.65892 -11.53760 -11.03254 -9.90163 -9.09156 -8.67613 -6.47993 -1.04809 0.27039 0.61361 0.73473 1.31129 1.39455 1.45364 2.08675 2.32603 3.09669 3.23194 3.30411 4.22225 4.44435 4.49959 4.71526 4.81345 5.09389 5.09937 5.44166 5.59176 5.71546 5.80719 6.10124 6.27427 6.44216 6.54040 6.92018 7.21544 7.87365 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.011629 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.776179 B = 2407.160142 C = 3219.324769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.048 3.952 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.239 1.239 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.059 0.941 9 C 0.097 3.903 10 C -0.122 4.122 11 C -0.120 4.120 12 C 0.106 3.894 13 N -0.858 5.858 14 C 0.069 3.931 15 O -0.502 6.502 16 C -0.177 4.177 17 N 0.027 4.973 18 O -0.189 6.189 19 O -0.212 6.212 20 H 0.313 0.687 21 H 0.142 0.858 22 H 0.153 0.847 23 H 0.408 0.592 24 H 0.399 0.601 25 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -1.995 -5.707 7.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.162 1.162 6 H -0.179 1.179 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.092 3.908 10 C -0.142 4.142 11 C -0.141 4.141 12 C 0.001 3.999 13 N -0.402 5.402 14 C 0.017 3.983 15 O -0.312 6.312 16 C -0.261 4.261 17 N 0.518 4.482 18 O -0.395 6.395 19 O -0.411 6.411 20 H 0.126 0.874 21 H 0.160 0.840 22 H 0.170 0.830 23 H 0.238 0.762 24 H 0.228 0.772 25 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.559 -1.664 -5.582 8.052 hybrid contribution 1.193 0.044 0.166 1.206 sum -4.366 -1.620 -5.416 7.143 Atomic orbital electron populations 1.68993 1.09485 1.33231 1.26769 1.28164 0.95574 1.04215 0.89866 0.85017 0.78891 0.74597 0.80503 1.19403 1.16217 1.17920 1.20725 0.95628 0.91752 1.43643 0.92306 1.17278 0.93718 0.88923 0.90859 1.21142 0.95362 0.98751 0.98957 1.20647 1.01017 0.90159 1.02312 1.17296 0.93315 0.89111 1.00156 1.41265 1.30577 1.05060 1.63331 1.16717 0.95780 0.82349 1.03458 1.84833 1.65395 1.33542 1.47403 1.20220 0.91785 0.98639 1.15503 1.50418 1.04425 0.91193 1.02193 1.96086 1.15977 1.54101 1.73335 1.96136 1.96058 1.55916 0.92961 0.87402 0.84046 0.82988 0.76222 0.77229 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.16 10.86 23.22 0.25 -33.91 15 2 C 0.05 2.21 5.40 87.20 0.47 2.68 15 3 Si 0.99 35.24 29.66 68.60 2.03 37.28 15 4 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 5 H -0.24 -7.49 7.11 99.48 0.71 -6.79 15 6 H -0.26 -8.59 7.11 99.48 0.71 -7.88 15 7 C -0.49 -26.44 8.93 24.74 0.22 -26.22 15 8 H 0.06 3.37 7.62 -2.91 -0.02 3.35 15 9 C 0.10 5.12 5.61 -21.25 -0.12 5.00 15 10 C -0.12 -5.57 8.68 22.60 0.20 -5.37 15 11 C -0.12 -4.57 9.81 22.16 0.22 -4.35 15 12 C 0.11 4.04 6.79 39.27 0.27 4.30 15 13 N -0.86 -23.66 8.98 -50.73 -0.46 -24.11 15 14 C 0.07 3.12 6.68 22.40 0.15 3.27 15 15 O -0.50 -20.30 12.42 -92.85 -1.15 -21.46 15 16 C -0.18 -9.37 6.27 36.74 0.23 -9.14 15 17 N 0.03 1.49 3.77 -45.61 -0.17 1.32 15 18 O -0.19 -10.08 19.97 3.52 0.07 -10.01 15 19 O -0.21 -12.12 19.97 3.52 0.07 -12.05 15 20 H 0.31 11.92 8.27 -92.71 -0.77 11.15 15 21 H 0.14 6.33 6.08 -2.91 -0.02 6.31 15 22 H 0.15 4.45 8.06 -2.91 -0.02 4.43 15 23 H 0.41 8.59 8.81 -92.71 -0.82 7.77 15 24 H 0.40 10.09 8.14 -92.71 -0.75 9.34 15 25 H 0.39 12.26 9.06 -74.06 -0.67 11.59 15 Total: -1.00 -64.41 241.16 1.33 -63.08 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.95 Total: 29.68 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 1.63 Total: -29.82 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.38 Total: -56.71 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.01 Total: -43.51 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.28 kcal Total: -64.41 1.33 -63.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718373.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.962 kcal (2) G-P(sol) polarization free energy of solvation -64.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds