Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29518 * 1 3 3 Si 1.86806 * 119.99711 * 2 1 4 4 H 1.48498 * 109.47291 * 269.99863 * 3 2 1 5 5 H 1.48496 * 109.47173 * 30.00659 * 3 2 1 6 6 H 1.48499 * 109.46824 * 150.00149 * 3 2 1 7 7 C 1.46510 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99776 * 192.51776 * 7 2 1 9 9 C 1.40362 * 119.99798 * 12.51194 * 7 2 1 10 10 C 1.41186 * 120.22515 * 25.18433 * 9 7 2 11 11 C 1.38139 * 119.73576 * 180.02562 * 10 9 7 12 12 N 1.39660 * 119.89751 * 179.97438 * 11 10 9 13 13 C 1.39416 * 120.19992 * 359.73134 * 11 10 9 14 14 N 1.48011 * 119.76798 * 180.27266 * 13 11 10 15 15 O 1.31698 * 120.00169 * 270.26861 * 14 13 11 16 16 O 1.31702 * 120.00353 * 90.27282 * 14 13 11 17 17 C 1.39144 * 120.45694 * 0.54253 * 13 11 10 18 18 O 1.35904 * 119.86668 * 179.72836 * 17 13 11 19 19 C 1.38004 * 120.26463 * 359.45729 * 17 13 11 20 20 H 0.96998 * 119.99916 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.13267 * 359.97438 * 10 9 7 22 22 H 0.96995 * 120.00145 * 359.97438 * 12 11 10 23 23 H 0.97001 * 119.99873 * 180.02562 * 12 11 10 24 24 H 0.96704 * 113.99689 * 269.73277 * 18 17 13 25 25 H 1.08007 * 120.10888 * 180.24702 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 2.4767 2.0465 -1.4000 5 1 1.4266 2.6527 0.7002 6 1 3.5267 1.4403 0.7000 7 6 2.0278 -1.2688 -0.0006 8 1 3.0885 -1.2799 0.2021 9 6 1.3509 -2.4698 -0.2645 10 6 0.1609 -2.4629 -1.0242 11 6 -0.4972 -3.6507 -1.2774 12 7 -1.6749 -3.6477 -2.0280 13 6 0.0133 -4.8530 -0.7901 14 7 -0.6964 -6.1209 -1.0722 15 8 -1.6252 -6.5538 -0.2450 16 8 -0.3991 -6.8162 -2.1505 17 6 1.1824 -4.8687 -0.0357 18 8 1.6665 -6.0470 0.4380 19 6 1.8554 -3.6932 0.2286 20 1 -0.4850 0.8400 0.0004 21 1 -0.2337 -1.5325 -1.4051 22 1 -2.0297 -2.8124 -2.3704 23 1 -2.1385 -4.4809 -2.2064 24 1 1.3348 -6.2843 1.3148 25 1 2.7648 -3.7088 0.8111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718562.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = -30.814377 kcal Electronic energy + Delta-G solvation = -14959.767489 eV Core-core repulsion = 12134.392927 eV Total energy + Delta-G solvation = -2825.374561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96897 -39.20757 -38.19865 -36.20409 -35.37427 -34.52420 -31.82054 -29.28760 -28.76584 -25.70537 -23.34640 -22.60588 -20.22248 -19.34109 -19.22174 -18.85956 -17.74960 -17.35418 -16.71094 -16.21100 -15.57424 -15.33191 -15.04620 -14.12706 -13.97757 -13.37423 -12.97606 -12.79841 -12.51359 -12.37174 -12.16134 -12.05045 -11.81579 -11.63404 -11.52145 -11.05808 -9.85107 -9.01914 -8.61196 -6.72217 -1.18974 0.36003 0.48150 0.84712 1.40312 1.46358 1.55536 2.11422 2.34408 2.73321 3.14961 3.42077 4.25826 4.33348 4.63700 4.72454 4.95091 5.02061 5.35615 5.43185 5.58795 5.70138 5.78333 6.09381 6.37516 6.51633 6.56119 6.74733 6.81274 7.91722 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.044139 B = 0.008254 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.202945 B = 3391.391578 C = 3820.211921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.037 3.963 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.251 1.251 7 C -0.438 4.438 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.272 4.272 11 C 0.278 3.722 12 N -0.872 5.872 13 C -0.265 4.265 14 N 0.018 4.982 15 O -0.182 6.182 16 O -0.200 6.200 17 C 0.195 3.805 18 O -0.511 6.511 19 C -0.267 4.267 20 H 0.309 0.691 21 H 0.136 0.864 22 H 0.412 0.588 23 H 0.388 0.612 24 H 0.405 0.595 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 4.202 0.714 4.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.174 1.174 7 C -0.462 4.462 8 H 0.121 0.879 9 C 0.119 3.881 10 C -0.297 4.297 11 C 0.172 3.828 12 N -0.413 5.413 13 C -0.352 4.352 14 N 0.510 4.490 15 O -0.388 6.388 16 O -0.400 6.400 17 C 0.149 3.851 18 O -0.324 6.324 19 C -0.288 4.288 20 H 0.122 0.878 21 H 0.153 0.847 22 H 0.243 0.757 23 H 0.215 0.785 24 H 0.263 0.737 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.950 4.933 0.357 5.036 hybrid contribution -0.770 -0.196 0.193 0.817 sum 0.180 4.737 0.550 4.772 Atomic orbital electron populations 1.69115 1.10297 1.33120 1.25175 1.28515 0.95437 1.05145 0.89977 0.84907 0.79293 0.73805 0.80147 1.18157 1.18612 1.17396 1.21434 0.97143 0.89953 1.37702 0.87889 1.17602 0.90922 0.92499 0.87061 1.20720 1.02758 0.94186 1.12062 1.16950 0.86638 0.90188 0.89066 1.42291 1.25919 1.12050 1.61084 1.19819 1.04708 0.78800 1.31838 1.50432 0.97553 1.02441 0.98597 1.96139 1.24478 1.75597 1.42596 1.96167 1.70821 1.58309 1.14694 1.17446 0.88650 0.85673 0.93371 1.84730 1.71033 1.36960 1.39630 1.21281 1.05121 0.90394 1.11985 0.87813 0.84683 0.75716 0.78490 0.73699 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -31.55 10.84 23.21 0.25 -31.30 15 2 C 0.04 1.46 5.41 87.19 0.47 1.93 15 3 Si 1.00 29.54 29.66 68.60 2.03 31.58 15 4 H -0.26 -7.47 7.11 99.48 0.71 -6.76 15 5 H -0.26 -7.31 7.11 99.48 0.71 -6.60 15 6 H -0.25 -7.27 7.11 99.48 0.71 -6.56 15 7 C -0.44 -19.48 9.32 24.94 0.23 -19.25 15 8 H 0.10 4.27 7.96 -2.91 -0.02 4.25 15 9 C 0.12 5.90 5.61 -21.30 -0.12 5.78 15 10 C -0.27 -12.84 8.60 22.97 0.20 -12.64 15 11 C 0.28 12.79 6.74 38.15 0.26 13.05 15 12 N -0.87 -33.37 9.07 -51.54 -0.47 -33.83 15 13 C -0.27 -12.74 6.33 36.88 0.23 -12.51 15 14 N 0.02 0.86 3.71 -45.28 -0.17 0.69 15 15 O -0.18 -8.39 19.97 3.52 0.07 -8.32 15 16 O -0.20 -9.64 19.97 3.51 0.07 -9.57 15 17 C 0.19 9.01 6.69 22.43 0.15 9.16 15 18 O -0.51 -21.03 13.24 -92.47 -1.22 -22.25 15 19 C -0.27 -12.23 9.74 22.95 0.22 -12.00 15 20 H 0.31 11.15 8.27 -92.71 -0.77 10.38 15 21 H 0.14 6.31 6.04 -2.91 -0.02 6.30 15 22 H 0.41 13.43 8.83 -92.71 -0.82 12.61 15 23 H 0.39 14.48 8.06 -92.71 -0.75 13.73 15 24 H 0.40 12.67 9.06 -74.05 -0.67 12.00 15 25 H 0.13 5.46 8.06 -2.91 -0.02 5.43 15 Total: -1.00 -55.98 242.49 1.27 -54.71 By element: Atomic # 1 Polarization: 45.73 SS G_CDS: -0.95 Total: 44.78 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 1.65 Total: -26.49 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.38 Total: -64.45 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.08 Total: -40.14 kcal Atomic # 14 Polarization: 29.54 SS G_CDS: 2.03 Total: 31.58 kcal Total: -55.98 1.27 -54.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718562.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.899 kcal (2) G-P(sol) polarization free energy of solvation -55.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds