Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29466 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48505 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47309 * 300.00135 * 3 2 1 6 6 H 1.48498 * 109.47161 * 60.00259 * 3 2 1 7 7 C 1.46660 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00084 * 168.48935 * 7 2 1 9 9 C 1.39427 * 119.99852 * 348.76569 * 7 2 1 10 10 C 1.46759 * 120.64982 * 312.96735 * 9 7 2 11 11 N 1.37702 * 120.66146 * 359.97438 * 10 9 7 12 12 C 1.39707 * 118.67158 * 179.76798 * 10 9 7 13 13 O 1.36011 * 120.03835 * 180.22698 * 12 10 9 14 14 C 1.38061 * 119.91955 * 0.48947 * 12 10 9 15 15 C 1.39226 * 121.36157 * 359.75659 * 14 12 10 16 16 C 1.35823 * 121.40108 * 359.97438 * 15 14 12 17 17 N 1.48018 * 120.02917 * 179.97438 * 16 15 14 18 18 O 1.31698 * 119.99868 * 354.23510 * 17 16 15 19 19 O 1.31699 * 120.00020 * 174.23837 * 17 16 15 20 20 H 0.96992 * 119.99784 * 5.01848 * 1 2 3 21 21 H 0.96999 * 120.00557 * 0.02562 * 11 10 9 22 22 H 0.97003 * 119.99880 * 179.97438 * 11 10 9 23 23 H 0.96701 * 113.99904 * 270.25564 * 13 12 10 24 24 H 1.08005 * 119.31881 * 179.73565 * 14 12 10 25 25 H 1.08005 * 119.30089 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 3.6887 1.3463 0.0006 5 1 1.8699 2.3965 -1.2125 6 1 1.8699 2.3964 1.2125 7 6 2.0280 -1.2701 -0.0006 8 1 3.0917 -1.2794 -0.1872 9 6 1.3508 -2.4661 0.2341 10 6 0.4053 -2.5839 1.3503 11 7 0.1696 -1.5157 2.1868 12 6 -0.2543 -3.8001 1.5446 13 8 -1.1398 -3.9386 2.5676 14 6 -0.0020 -4.8628 0.7002 15 6 0.8993 -4.7516 -0.3552 16 6 1.5662 -3.5935 -0.5972 17 7 2.5182 -3.5091 -1.7275 18 8 2.8046 -4.5864 -2.4289 19 8 3.0787 -2.3569 -2.0318 20 1 -0.4849 0.8368 -0.0735 21 1 0.6303 -0.6746 2.0410 22 1 -0.4576 -1.6041 2.9214 23 1 -0.7415 -4.2448 3.3938 24 1 -0.5141 -5.7999 0.8618 25 1 1.0717 -5.6045 -0.9951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718822.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -7.047850 kcal Electronic energy + Delta-G solvation = -15295.394554 eV Core-core repulsion = 12471.050587 eV Total energy + Delta-G solvation = -2824.343967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.91518 -37.11304 -35.74578 -34.35661 -33.05760 -32.53870 -30.13517 -28.12423 -25.75491 -24.14247 -21.42957 -20.56540 -18.45147 -17.40342 -17.02562 -16.53554 -15.67663 -15.49143 -14.56265 -14.52799 -14.16314 -13.49142 -13.25140 -12.49068 -11.94736 -11.86970 -11.74688 -11.39038 -11.00357 -10.70916 -10.08496 -9.85754 -9.70149 -9.47363 -9.19626 -9.05177 -7.97136 -7.63944 -6.70578 -4.88444 0.98909 2.27184 2.70063 2.73444 2.80394 2.81232 3.10160 3.43646 3.83738 4.57703 4.80001 5.08771 5.84739 6.08551 6.16076 6.30268 6.52352 6.78749 6.97655 7.23314 7.39939 7.43830 7.75548 7.79060 7.99250 8.16521 8.56709 8.62173 8.75803 9.20885 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.015266 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.676257 B = 1833.740369 C = 3012.349396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.050 3.950 3 Si 0.932 3.068 4 H -0.245 1.245 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.342 4.342 8 H 0.122 0.878 9 C 0.087 3.913 10 C 0.194 3.806 11 N -0.837 5.837 12 C 0.000 4.000 13 O -0.494 6.494 14 C -0.172 4.172 15 C -0.093 4.093 16 C -0.071 4.071 17 N 0.036 4.964 18 O -0.346 6.346 19 O -0.265 6.265 20 H 0.305 0.695 21 H 0.397 0.603 22 H 0.389 0.611 23 H 0.359 0.641 24 H 0.113 0.887 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 3.050 7.854 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.180 4.180 3 Si 0.753 3.247 4 H -0.167 1.167 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.370 4.370 8 H 0.139 0.861 9 C 0.080 3.920 10 C 0.084 3.916 11 N -0.375 5.375 12 C -0.052 4.052 13 O -0.301 6.301 14 C -0.194 4.194 15 C -0.114 4.114 16 C -0.172 4.172 17 N 0.461 4.539 18 O -0.491 6.491 19 O -0.431 6.431 20 H 0.117 0.883 21 H 0.229 0.771 22 H 0.217 0.783 23 H 0.212 0.788 24 H 0.131 0.869 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.610 3.189 7.585 8.633 hybrid contribution 0.583 0.712 0.118 0.928 sum -2.028 3.901 7.704 8.870 Atomic orbital electron populations 1.69093 1.08857 1.32617 1.23049 1.27909 0.94972 1.02853 0.92247 0.85795 0.81864 0.77561 0.79477 1.16713 1.18548 1.18895 1.21539 0.97580 0.88423 1.29507 0.86052 1.17726 0.91900 0.92355 0.90058 1.19340 0.94428 0.87719 0.90124 1.41715 1.49675 1.13320 1.32757 1.17520 0.99483 0.93349 0.94858 1.84952 1.34739 1.89275 1.21100 1.20217 1.02498 0.98238 0.98466 1.19619 0.96883 0.96292 0.98630 1.19453 1.05026 0.99313 0.93422 1.49718 1.01117 1.01059 1.02039 1.96077 1.73995 1.23098 1.55975 1.96078 1.55753 1.12064 1.79171 0.88254 0.77150 0.78350 0.78847 0.86876 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.87 11.26 55.99 0.63 -14.24 15 2 C 0.05 1.03 3.96 -15.15 -0.06 0.97 15 3 Si 0.93 15.42 29.66 -169.99 -5.04 10.38 15 4 H -0.24 -4.18 7.11 56.52 0.40 -3.78 15 5 H -0.26 -4.40 7.11 56.52 0.40 -3.99 15 6 H -0.26 -4.01 7.11 56.52 0.40 -3.61 15 7 C -0.34 -8.05 7.06 -35.74 -0.25 -8.30 15 8 H 0.12 2.96 6.64 -52.49 -0.35 2.61 15 9 C 0.09 2.12 5.44 -104.68 -0.57 1.55 15 10 C 0.19 4.18 6.47 -81.24 -0.53 3.65 15 11 N -0.84 -15.20 8.03 33.83 0.27 -14.93 15 12 C 0.00 0.00 6.72 -39.10 -0.26 -0.26 15 13 O -0.49 -8.55 12.78 -19.77 -0.25 -8.80 15 14 C -0.17 -3.59 9.92 -39.28 -0.39 -3.98 15 15 C -0.09 -2.16 9.47 -40.08 -0.38 -2.54 15 16 C -0.07 -1.83 6.89 -79.48 -0.55 -2.38 15 17 N 0.04 1.03 4.98 34.19 0.17 1.20 15 18 O -0.35 -9.98 19.11 -31.57 -0.60 -10.58 15 19 O -0.27 -7.59 16.56 -31.57 -0.52 -8.11 15 20 H 0.30 5.54 8.27 -40.82 -0.34 5.20 15 21 H 0.40 7.17 5.78 -40.82 -0.24 6.93 15 22 H 0.39 6.06 8.20 -40.82 -0.33 5.73 15 23 H 0.36 4.46 9.06 45.56 0.41 4.87 15 24 H 0.11 2.06 8.06 -52.48 -0.42 1.63 15 25 H 0.12 2.66 7.50 -52.48 -0.39 2.27 15 LS Contribution 233.15 15.07 3.51 3.51 Total: -1.00 -29.72 233.15 -5.28 -35.00 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.46 Total: 17.86 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.99 Total: -11.29 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 1.07 Total: -27.97 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.38 Total: -27.50 kcal Atomic # 14 Polarization: 15.42 SS G_CDS: -5.04 Total: 10.38 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.72 -5.28 -35.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718822.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.954 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds