Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29466 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48505 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47309 * 300.00135 * 3 2 1 6 6 H 1.48498 * 109.47161 * 60.00259 * 3 2 1 7 7 C 1.46660 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00084 * 168.48935 * 7 2 1 9 9 C 1.39427 * 119.99852 * 348.76569 * 7 2 1 10 10 C 1.46759 * 120.64982 * 312.96735 * 9 7 2 11 11 N 1.37702 * 120.66146 * 359.97438 * 10 9 7 12 12 C 1.39707 * 118.67158 * 179.76798 * 10 9 7 13 13 O 1.36011 * 120.03835 * 180.22698 * 12 10 9 14 14 C 1.38061 * 119.91955 * 0.48947 * 12 10 9 15 15 C 1.39226 * 121.36157 * 359.75659 * 14 12 10 16 16 C 1.35823 * 121.40108 * 359.97438 * 15 14 12 17 17 N 1.48018 * 120.02917 * 179.97438 * 16 15 14 18 18 O 1.31698 * 119.99868 * 354.23510 * 17 16 15 19 19 O 1.31699 * 120.00020 * 174.23837 * 17 16 15 20 20 H 0.96992 * 119.99784 * 5.01848 * 1 2 3 21 21 H 0.96999 * 120.00557 * 0.02562 * 11 10 9 22 22 H 0.97003 * 119.99880 * 179.97438 * 11 10 9 23 23 H 0.96701 * 113.99904 * 270.25564 * 13 12 10 24 24 H 1.08005 * 119.31881 * 179.73565 * 14 12 10 25 25 H 1.08005 * 119.30089 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 3.6887 1.3463 0.0006 5 1 1.8699 2.3965 -1.2125 6 1 1.8699 2.3964 1.2125 7 6 2.0280 -1.2701 -0.0006 8 1 3.0917 -1.2794 -0.1872 9 6 1.3508 -2.4661 0.2341 10 6 0.4053 -2.5839 1.3503 11 7 0.1696 -1.5157 2.1868 12 6 -0.2543 -3.8001 1.5446 13 8 -1.1398 -3.9386 2.5676 14 6 -0.0020 -4.8628 0.7002 15 6 0.8993 -4.7516 -0.3552 16 6 1.5662 -3.5935 -0.5972 17 7 2.5182 -3.5091 -1.7275 18 8 2.8046 -4.5864 -2.4289 19 8 3.0787 -2.3569 -2.0318 20 1 -0.4849 0.8368 -0.0735 21 1 0.6303 -0.6746 2.0410 22 1 -0.4576 -1.6041 2.9214 23 1 -0.7415 -4.2448 3.3938 24 1 -0.5141 -5.7999 0.8618 25 1 1.0717 -5.6045 -0.9951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718822.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -30.196217 kcal Electronic energy + Delta-G solvation = -15296.398343 eV Core-core repulsion = 12471.050587 eV Total energy + Delta-G solvation = -2825.347756 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61732 -38.79318 -37.41464 -36.09603 -34.76560 -34.37599 -31.94953 -29.88320 -27.55100 -25.98546 -23.18041 -22.29223 -20.23145 -18.99110 -18.78605 -18.31246 -17.35877 -17.13939 -16.25226 -16.16172 -15.90725 -15.15438 -14.79807 -14.18537 -13.69673 -13.58677 -13.30302 -12.91456 -12.73981 -12.06804 -11.69993 -11.47751 -11.41856 -11.27434 -11.12487 -11.05394 -9.74814 -9.40098 -8.45059 -6.73557 -1.00777 0.56789 0.99672 1.27792 1.35596 1.36439 1.51396 2.03427 2.17652 2.85229 3.16922 3.54822 4.12174 4.32414 4.38774 4.54927 4.85993 5.04643 5.21390 5.55131 5.58225 5.73204 5.78862 5.93203 6.18800 6.62532 6.90859 7.08338 7.18226 7.46972 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.015266 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.676257 B = 1833.740369 C = 3012.349396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.016 3.984 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.223 1.223 7 C -0.281 4.281 8 H 0.108 0.892 9 C 0.030 3.970 10 C 0.213 3.787 11 N -0.818 5.818 12 C -0.014 4.014 13 O -0.487 6.487 14 C -0.120 4.120 15 C -0.146 4.146 16 C -0.057 4.057 17 N 0.027 4.973 18 O -0.450 6.450 19 O -0.363 6.363 20 H 0.330 0.670 21 H 0.400 0.600 22 H 0.408 0.592 23 H 0.387 0.613 24 H 0.147 0.853 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 6.121 11.728 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.145 1.145 7 C -0.311 4.311 8 H 0.126 0.874 9 C 0.022 3.978 10 C 0.100 3.900 11 N -0.356 5.356 12 C -0.067 4.067 13 O -0.297 6.297 14 C -0.143 4.143 15 C -0.168 4.168 16 C -0.167 4.167 17 N 0.411 4.589 18 O -0.568 6.568 19 O -0.500 6.500 20 H 0.145 0.855 21 H 0.231 0.769 22 H 0.239 0.761 23 H 0.243 0.757 24 H 0.164 0.836 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.146 6.211 11.267 13.857 hybrid contribution 0.931 0.200 -0.456 1.056 sum -4.214 6.412 10.811 13.257 Atomic orbital electron populations 1.69003 1.09788 1.35516 1.18016 1.28798 0.95910 1.04703 0.92036 0.84861 0.79459 0.72900 0.81139 1.18223 1.18398 1.14516 1.22202 0.97366 0.90216 1.21313 0.87401 1.18115 0.94695 0.92618 0.92323 1.19280 0.92490 0.89078 0.89113 1.41705 1.49259 1.12340 1.32277 1.17365 1.00228 0.92741 0.96389 1.84895 1.33880 1.89287 1.21618 1.20677 0.98845 0.99432 0.95367 1.19677 0.99890 0.96066 1.01196 1.20000 1.03425 1.00406 0.92893 1.49623 1.04403 1.00454 1.04460 1.95971 1.77711 1.23774 1.59341 1.95939 1.59075 1.12729 1.82224 0.85525 0.76858 0.76146 0.75699 0.83571 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -25.80 11.26 23.24 0.26 -25.54 15 2 C 0.02 0.61 3.96 87.24 0.35 0.95 15 3 Si 1.00 27.79 29.66 68.60 2.03 29.83 15 4 H -0.26 -7.90 7.11 99.48 0.71 -7.19 15 5 H -0.26 -7.34 7.11 99.48 0.71 -6.64 15 6 H -0.22 -4.90 7.11 99.48 0.71 -4.19 15 7 C -0.28 -12.94 7.06 24.76 0.17 -12.76 15 8 H 0.11 5.35 6.64 -2.91 -0.02 5.33 15 9 C 0.03 1.43 5.44 -19.90 -0.11 1.33 15 10 C 0.21 8.45 6.47 40.81 0.26 8.72 15 11 N -0.82 -25.46 8.03 -46.89 -0.38 -25.84 15 12 C -0.01 -0.51 6.72 22.58 0.15 -0.36 15 13 O -0.49 -14.10 12.78 -93.67 -1.20 -15.30 15 14 C -0.12 -4.73 9.92 22.47 0.22 -4.51 15 15 C -0.15 -7.05 9.47 21.95 0.21 -6.84 15 16 C -0.06 -3.11 6.89 36.68 0.25 -2.85 15 17 N 0.03 1.70 4.98 -45.75 -0.23 1.47 15 18 O -0.45 -29.56 19.11 3.52 0.07 -29.50 15 19 O -0.36 -22.98 16.56 3.52 0.06 -22.92 15 20 H 0.33 10.02 8.27 -92.71 -0.77 9.25 15 21 H 0.40 12.20 5.78 -92.71 -0.54 11.66 15 22 H 0.41 10.21 8.20 -92.71 -0.76 9.45 15 23 H 0.39 7.22 9.06 -74.06 -0.67 6.55 15 24 H 0.15 4.74 8.06 -2.91 -0.02 4.72 15 25 H 0.11 5.38 7.50 -2.91 -0.02 5.35 15 Total: -1.00 -71.28 233.15 1.45 -69.83 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.68 Total: 34.30 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 1.51 Total: -16.33 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.34 Total: -49.91 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -1.07 Total: -67.72 kcal Atomic # 14 Polarization: 27.79 SS G_CDS: 2.03 Total: 29.83 kcal Total: -71.28 1.45 -69.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718822.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.630 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds