Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29508 * 1 3 3 Si 1.86794 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47271 * 240.00236 * 3 2 1 5 5 H 1.48504 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47249 * 119.99767 * 3 2 1 7 7 C 1.46548 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99998 * 170.06847 * 7 2 1 9 9 C 1.39697 * 120.00234 * 349.80457 * 7 2 1 10 10 C 1.41514 * 120.17457 * 322.65827 * 9 7 2 11 11 C 1.36485 * 119.71895 * 179.97438 * 10 9 7 12 12 N 1.39782 * 119.95242 * 180.02562 * 11 10 9 13 13 C 1.40582 * 120.09464 * 0.02562 * 11 10 9 14 14 O 1.35298 * 119.82395 * 179.97438 * 13 11 10 15 15 C 1.39611 * 120.35755 * 0.02562 * 13 11 10 16 16 C 1.36101 * 120.27421 * 359.69173 * 15 13 11 17 17 N 1.48022 * 120.04403 * 180.29399 * 16 15 13 18 18 O 1.31695 * 120.00289 * 353.94613 * 17 16 15 19 19 O 1.31701 * 119.99927 * 173.93878 * 17 16 15 20 20 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.13651 * 359.95562 * 10 9 7 22 22 H 0.96998 * 119.99818 * 359.97438 * 12 11 10 23 23 H 0.97004 * 119.99695 * 180.02562 * 12 11 10 24 24 H 0.96702 * 114.00634 * 89.99512 * 14 13 11 25 25 H 1.07997 * 119.85969 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 3.0828 1.6964 -1.2125 5 1 1.2641 2.7464 -0.0006 6 1 3.0828 1.6963 1.2125 7 6 2.0278 -1.2692 0.0006 8 1 3.0957 -1.2763 -0.1607 9 6 1.3458 -2.4693 0.2152 10 6 0.2767 -2.5242 1.1407 11 6 -0.3835 -3.7016 1.3428 12 7 -1.4406 -3.7612 2.2555 13 6 -0.0018 -4.8544 0.6345 14 8 -0.6597 -6.0187 0.8395 15 6 1.0531 -4.8045 -0.2786 16 6 1.7179 -3.6370 -0.4959 17 7 2.8314 -3.5884 -1.4699 18 8 3.2580 -4.6971 -2.0383 19 8 3.3954 -2.4363 -1.7683 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0154 -1.6383 1.6850 22 1 -1.7042 -2.9663 2.7448 23 1 -1.9100 -4.5977 2.3999 24 1 -1.4191 -6.1497 0.2553 25 1 1.3398 -5.6951 -0.8181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719076.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = -14.720462 kcal Electronic energy + Delta-G solvation = -15075.897312 eV Core-core repulsion = 12251.220635 eV Total energy + Delta-G solvation = -2824.676677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08886 -37.15743 -35.81860 -34.29282 -33.38503 -32.59335 -29.79466 -28.43472 -25.82662 -23.87171 -21.82026 -20.53495 -18.27951 -17.84473 -16.80296 -16.07556 -16.04004 -15.54221 -14.96954 -14.30771 -13.91087 -13.68393 -12.99249 -12.77676 -12.32387 -11.68938 -11.53549 -11.23915 -11.16609 -10.57841 -10.08906 -9.93823 -9.64299 -9.51572 -9.16222 -9.03644 -7.88998 -7.57118 -6.96876 -5.00690 1.05430 2.25623 2.79146 2.82083 2.85959 2.90537 3.07676 3.53468 3.94918 4.45338 4.81415 5.11330 5.72825 6.17973 6.32002 6.40368 6.63161 6.76290 6.88062 7.19132 7.29216 7.54654 7.82202 7.91685 8.09103 8.13396 8.37001 8.49624 8.70908 9.33537 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.012518 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.529373 B = 2236.154866 C = 3319.937825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.063 3.937 3 Si 0.934 3.066 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.345 4.345 8 H 0.123 0.877 9 C 0.131 3.869 10 C -0.214 4.214 11 C 0.222 3.778 12 N -0.877 5.877 13 C -0.058 4.058 14 O -0.488 6.488 15 C -0.019 4.019 16 C -0.112 4.112 17 N 0.041 4.959 18 O -0.344 6.344 19 O -0.262 6.262 20 H 0.302 0.698 21 H 0.126 0.874 22 H 0.393 0.607 23 H 0.392 0.608 24 H 0.359 0.641 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 1.683 4.896 7.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.168 4.168 3 Si 0.755 3.245 4 H -0.172 1.172 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.372 4.372 8 H 0.141 0.859 9 C 0.125 3.875 10 C -0.240 4.240 11 C 0.118 3.882 12 N -0.418 5.418 13 C -0.107 4.107 14 O -0.294 6.294 15 C -0.040 4.040 16 C -0.213 4.213 17 N 0.467 4.533 18 O -0.492 6.492 19 O -0.429 6.429 20 H 0.114 0.886 21 H 0.144 0.856 22 H 0.220 0.780 23 H 0.219 0.781 24 H 0.211 0.789 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.820 1.524 5.418 8.096 hybrid contribution -0.249 0.637 -0.481 0.836 sum -6.069 2.161 4.937 8.117 Atomic orbital electron populations 1.69088 1.09158 1.32283 1.23611 1.27878 0.94869 1.03006 0.91021 0.85890 0.80245 0.76708 0.81674 1.17159 1.19628 1.17668 1.21854 0.97661 0.88684 1.29027 0.85926 1.16923 0.91109 0.90531 0.88965 1.20142 1.02907 0.95704 1.05234 1.17737 0.87888 0.93165 0.89438 1.42279 1.37535 1.14161 1.47785 1.17449 1.01131 0.85541 1.06621 1.84789 1.45925 1.37080 1.61633 1.20263 0.93371 0.96230 0.94117 1.19737 0.99323 0.97942 1.04288 1.49788 1.01356 1.01182 1.01000 1.96083 1.72074 1.19801 1.61213 1.96073 1.60992 1.12942 1.72921 0.88585 0.85615 0.77951 0.78063 0.78908 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -15.31 11.57 55.99 0.65 -14.66 15 2 C 0.06 1.36 5.38 -15.18 -0.08 1.28 15 3 Si 0.93 16.17 29.65 -169.99 -5.04 11.13 15 4 H -0.25 -4.49 7.11 56.52 0.40 -4.09 15 5 H -0.27 -4.39 7.11 56.52 0.40 -3.99 15 6 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 7 C -0.34 -8.42 7.69 -35.69 -0.27 -8.69 15 8 H 0.12 3.10 6.07 -52.48 -0.32 2.78 15 9 C 0.13 3.25 5.47 -106.79 -0.58 2.66 15 10 C -0.21 -4.72 8.45 -38.97 -0.33 -5.05 15 11 C 0.22 4.44 6.73 -83.98 -0.56 3.88 15 12 N -0.88 -13.42 9.08 32.30 0.29 -13.12 15 13 C -0.06 -1.19 6.77 -38.19 -0.26 -1.45 15 14 O -0.49 -8.46 12.70 -17.59 -0.22 -8.68 15 15 C -0.02 -0.45 9.46 -39.84 -0.38 -0.82 15 16 C -0.11 -2.88 6.89 -79.40 -0.55 -3.43 15 17 N 0.04 1.14 4.98 34.23 0.17 1.31 15 18 O -0.34 -9.83 19.14 -31.57 -0.60 -10.43 15 19 O -0.26 -7.49 16.31 -31.57 -0.52 -8.01 15 20 H 0.30 5.58 8.27 -40.82 -0.34 5.24 15 21 H 0.13 2.69 6.92 -52.49 -0.36 2.33 15 22 H 0.39 5.27 8.83 -40.82 -0.36 4.91 15 23 H 0.39 5.22 8.19 -40.82 -0.33 4.88 15 24 H 0.36 4.62 9.06 45.56 0.41 5.03 15 25 H 0.13 2.85 7.55 -52.49 -0.40 2.46 15 LS Contribution 236.48 15.07 3.56 3.56 Total: -1.00 -29.65 236.48 -5.22 -34.87 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.49 Total: 15.67 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -3.02 Total: -11.63 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 1.11 Total: -26.47 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.34 Total: -27.13 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -5.04 Total: 11.13 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.65 -5.22 -34.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719076.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.145 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds