Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29508 * 1 3 3 Si 1.86794 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47271 * 240.00236 * 3 2 1 5 5 H 1.48504 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47249 * 119.99767 * 3 2 1 7 7 C 1.46548 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99998 * 170.06847 * 7 2 1 9 9 C 1.39697 * 120.00234 * 349.80457 * 7 2 1 10 10 C 1.41514 * 120.17457 * 322.65827 * 9 7 2 11 11 C 1.36485 * 119.71895 * 179.97438 * 10 9 7 12 12 N 1.39782 * 119.95242 * 180.02562 * 11 10 9 13 13 C 1.40582 * 120.09464 * 0.02562 * 11 10 9 14 14 O 1.35298 * 119.82395 * 179.97438 * 13 11 10 15 15 C 1.39611 * 120.35755 * 0.02562 * 13 11 10 16 16 C 1.36101 * 120.27421 * 359.69173 * 15 13 11 17 17 N 1.48022 * 120.04403 * 180.29399 * 16 15 13 18 18 O 1.31695 * 120.00289 * 353.94613 * 17 16 15 19 19 O 1.31701 * 119.99927 * 173.93878 * 17 16 15 20 20 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.13651 * 359.95562 * 10 9 7 22 22 H 0.96998 * 119.99818 * 359.97438 * 12 11 10 23 23 H 0.97004 * 119.99695 * 180.02562 * 12 11 10 24 24 H 0.96702 * 114.00634 * 89.99512 * 14 13 11 25 25 H 1.07997 * 119.85969 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 3.0828 1.6964 -1.2125 5 1 1.2641 2.7464 -0.0006 6 1 3.0828 1.6963 1.2125 7 6 2.0278 -1.2692 0.0006 8 1 3.0957 -1.2763 -0.1607 9 6 1.3458 -2.4693 0.2152 10 6 0.2767 -2.5242 1.1407 11 6 -0.3835 -3.7016 1.3428 12 7 -1.4406 -3.7612 2.2555 13 6 -0.0018 -4.8544 0.6345 14 8 -0.6597 -6.0187 0.8395 15 6 1.0531 -4.8045 -0.2786 16 6 1.7179 -3.6370 -0.4959 17 7 2.8314 -3.5884 -1.4699 18 8 3.2580 -4.6971 -2.0383 19 8 3.3954 -2.4363 -1.7683 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0154 -1.6383 1.6850 22 1 -1.7042 -2.9663 2.7448 23 1 -1.9100 -4.5977 2.3999 24 1 -1.4191 -6.1497 0.2553 25 1 1.3398 -5.6951 -0.8181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719076.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = -37.855198 kcal Electronic energy + Delta-G solvation = -15076.900510 eV Core-core repulsion = 12251.220635 eV Total energy + Delta-G solvation = -2825.679874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81966 -38.92358 -37.52049 -35.94981 -35.04408 -34.48901 -31.59890 -30.11959 -27.66580 -25.68833 -23.57731 -22.27922 -20.05145 -19.50860 -18.56081 -17.77494 -17.70157 -17.13315 -16.53647 -16.17377 -15.61218 -15.26757 -14.63180 -14.43245 -14.04626 -13.31858 -13.06548 -12.99512 -12.79572 -12.01321 -11.72250 -11.60538 -11.43534 -11.27638 -11.19170 -10.99852 -9.69384 -9.27484 -8.55563 -6.87437 -0.96360 0.57048 1.02088 1.26248 1.35647 1.47219 1.48605 2.11551 2.28094 2.98696 3.11231 3.44256 3.98669 4.41540 4.56939 4.65558 4.88802 5.02579 5.24600 5.41109 5.53266 5.72121 5.99964 6.16867 6.27785 6.56799 6.78868 7.00571 7.14004 7.65505 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.012518 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.529373 B = 2236.154866 C = 3319.937825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.030 3.970 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.239 1.239 6 H -0.244 1.244 7 C -0.323 4.323 8 H 0.105 0.895 9 C 0.087 3.913 10 C -0.212 4.212 11 C 0.223 3.777 12 N -0.851 5.851 13 C 0.004 3.996 14 O -0.485 6.485 15 C -0.062 4.062 16 C -0.104 4.104 17 N 0.036 4.964 18 O -0.428 6.428 19 O -0.346 6.346 20 H 0.324 0.676 21 H 0.137 0.863 22 H 0.408 0.592 23 H 0.407 0.593 24 H 0.394 0.606 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 3.297 7.648 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.162 1.162 6 H -0.168 1.168 7 C -0.352 4.352 8 H 0.122 0.878 9 C 0.081 3.919 10 C -0.239 4.239 11 C 0.116 3.884 12 N -0.393 5.393 13 C -0.047 4.047 14 O -0.295 6.295 15 C -0.083 4.083 16 C -0.213 4.213 17 N 0.429 4.571 18 O -0.554 6.554 19 O -0.489 6.489 20 H 0.138 0.862 21 H 0.154 0.846 22 H 0.238 0.762 23 H 0.237 0.763 24 H 0.250 0.750 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.205 3.072 8.028 12.595 hybrid contribution 0.252 0.238 -0.909 0.973 sum -8.954 3.310 7.119 11.908 Atomic orbital electron populations 1.68991 1.09779 1.34750 1.19999 1.28616 0.95830 1.04693 0.90966 0.84991 0.79354 0.73200 0.80987 1.19251 1.16195 1.16751 1.22274 0.97413 0.90622 1.24892 0.87765 1.17307 0.93231 0.90497 0.90823 1.20131 1.02059 0.96975 1.04712 1.17670 0.88704 0.92087 0.89970 1.42171 1.35408 1.15746 1.45932 1.17557 0.98639 0.86195 1.02340 1.84675 1.47110 1.35310 1.62371 1.20382 0.95433 0.95801 0.96666 1.20240 0.98099 0.99251 1.03701 1.49797 1.03273 1.00524 1.03512 1.95991 1.74491 1.20255 1.64634 1.95976 1.63272 1.13407 1.76276 0.86242 0.84551 0.76243 0.76278 0.74960 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -27.84 11.57 23.21 0.27 -27.58 15 2 C 0.03 1.22 5.38 87.20 0.47 1.69 15 3 Si 1.00 31.01 29.65 68.60 2.03 33.04 15 4 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 5 H -0.24 -6.25 7.11 99.48 0.71 -5.54 15 6 H -0.24 -7.28 7.11 99.48 0.71 -6.57 15 7 C -0.32 -15.88 7.69 24.79 0.19 -15.69 15 8 H 0.10 5.53 6.07 -2.91 -0.02 5.51 15 9 C 0.09 4.34 5.47 -21.27 -0.12 4.23 15 10 C -0.21 -8.78 8.45 22.67 0.19 -8.59 15 11 C 0.22 8.03 6.73 38.04 0.26 8.28 15 12 N -0.85 -21.27 9.08 -51.71 -0.47 -21.74 15 13 C 0.00 0.15 6.77 23.17 0.16 0.30 15 14 O -0.48 -14.49 12.70 -85.84 -1.09 -15.59 15 15 C -0.06 -2.91 9.46 22.10 0.21 -2.70 15 16 C -0.10 -5.58 6.89 36.73 0.25 -5.32 15 17 N 0.04 2.23 4.98 -45.62 -0.23 2.00 15 18 O -0.43 -27.19 19.14 3.52 0.07 -27.12 15 19 O -0.35 -21.77 16.31 3.51 0.06 -21.71 15 20 H 0.32 10.48 8.27 -92.71 -0.77 9.71 15 21 H 0.14 5.30 6.92 -2.91 -0.02 5.28 15 22 H 0.41 8.55 8.83 -92.71 -0.82 7.73 15 23 H 0.41 8.30 8.19 -92.71 -0.76 7.55 15 24 H 0.39 7.88 9.06 -74.06 -0.67 7.21 15 25 H 0.12 5.79 7.55 -2.91 -0.02 5.77 15 Total: -1.00 -69.66 236.48 1.30 -68.36 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.95 Total: 28.12 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 1.61 Total: -17.79 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.43 Total: -47.32 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -0.97 Total: -64.42 kcal Atomic # 14 Polarization: 31.01 SS G_CDS: 2.03 Total: 33.04 kcal Total: -69.66 1.30 -68.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719076.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.507 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds