Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29407 * 1 3 3 Si 1.86810 * 119.99782 * 2 1 4 4 H 1.48501 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46761 * 299.99726 * 3 2 1 6 6 H 1.48494 * 109.47125 * 60.00164 * 3 2 1 7 7 C 1.46766 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00233 * 160.97031 * 7 2 1 9 9 C 1.38903 * 119.99963 * 340.97354 * 7 2 1 10 10 C 1.47062 * 120.96259 * 143.15721 * 9 7 2 11 11 N 1.37791 * 120.57747 * 0.02562 * 10 9 7 12 12 C 1.38569 * 118.83964 * 180.22747 * 10 9 7 13 13 C 1.38044 * 120.93490 * 359.77331 * 12 10 9 14 14 C 1.38456 * 122.15627 * 359.97438 * 13 12 10 15 15 N 1.48014 * 119.47429 * 180.02562 * 14 13 12 16 16 O 1.31703 * 120.00182 * 359.97438 * 15 14 13 17 17 O 1.31696 * 119.99945 * 179.97438 * 15 14 13 18 18 C 1.38018 * 121.04997 * 359.97438 * 14 13 12 19 19 O 1.35367 * 120.52499 * 179.97438 * 18 14 13 20 20 H 0.97003 * 120.00123 * 359.97438 * 1 2 3 21 21 H 0.97010 * 119.99411 * 180.22019 * 11 10 9 22 22 H 0.96997 * 120.00790 * 0.22037 * 11 10 9 23 23 H 1.07999 * 119.53438 * 179.74206 * 12 10 9 24 24 H 1.08001 * 118.92270 * 179.97438 * 13 12 10 25 25 H 0.96697 * 113.99452 * 92.55667 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6179 0.0000 4 1 3.6881 1.3465 -0.0006 5 1 1.8693 2.3964 -1.2126 6 1 1.8693 2.3965 1.2125 7 6 2.0280 -1.2710 0.0006 8 1 3.0637 -1.2967 -0.3044 9 6 1.3904 -2.4409 0.3933 10 6 1.6798 -3.7202 -0.2719 11 7 2.5932 -3.7839 -1.3016 12 6 1.0148 -4.8595 0.1522 13 6 0.0987 -4.8041 1.1834 14 6 -0.2002 -3.6228 1.8407 15 7 -1.1922 -3.6315 2.9393 16 8 -1.7830 -4.7570 3.2841 17 8 -1.4840 -2.5140 3.5719 18 6 0.4128 -2.4374 1.4887 19 8 0.1120 -1.2884 2.1383 20 1 -0.4850 0.8401 0.0004 21 1 2.7753 -4.6317 -1.7366 22 1 3.0541 -2.9813 -1.5916 23 1 1.2156 -5.8042 -0.3312 24 1 -0.4011 -5.7119 1.4873 25 1 0.6942 -1.0954 2.8858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = -1.481237 kcal Electronic energy + Delta-G solvation = -15239.740108 eV Core-core repulsion = 12415.637528 eV Total energy + Delta-G solvation = -2824.102581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.72513 -37.11464 -35.84997 -33.80854 -33.29119 -32.93001 -29.69076 -28.67702 -25.18709 -24.44656 -21.51669 -20.45340 -18.18688 -17.33248 -17.07223 -16.42085 -16.03497 -15.18829 -15.14233 -14.61883 -13.65541 -13.44989 -12.99085 -12.40466 -12.13290 -11.78652 -11.45521 -11.10205 -10.94319 -10.40100 -10.17555 -10.08379 -9.83253 -9.59772 -9.49277 -9.11910 -7.65769 -7.25800 -6.95788 -4.48941 0.63169 2.35399 2.50904 2.64256 2.89115 2.91530 2.94686 3.66499 4.19082 4.59823 4.85554 5.37063 5.76725 6.07135 6.19198 6.40105 6.63258 6.78510 6.84017 7.09693 7.19613 7.49844 7.77868 8.05778 8.15282 8.19169 8.41408 8.53759 9.02213 9.78774 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.012257 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.418719 B = 2283.932739 C = 3193.610619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.080 3.920 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.089 0.911 9 C 0.058 3.942 10 C 0.162 3.838 11 N -0.857 5.857 12 C -0.182 4.182 13 C -0.139 4.139 14 C -0.021 4.021 15 N 0.011 4.989 16 O -0.260 6.260 17 O -0.196 6.196 18 C 0.074 3.926 19 O -0.441 6.441 20 H 0.294 0.706 21 H 0.388 0.612 22 H 0.399 0.601 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -0.594 -3.089 6.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.152 4.152 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.484 4.484 8 H 0.106 0.894 9 C 0.051 3.949 10 C 0.055 3.945 11 N -0.396 5.396 12 C -0.207 4.207 13 C -0.161 4.161 14 C -0.112 4.112 15 N 0.475 4.525 16 O -0.435 6.435 17 O -0.388 6.388 18 C 0.022 3.978 19 O -0.247 6.247 20 H 0.107 0.893 21 H 0.215 0.785 22 H 0.228 0.772 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.836 -0.471 -3.879 7.023 hybrid contribution 0.453 0.630 0.359 0.855 sum 6.289 0.159 -3.519 7.208 Atomic orbital electron populations 1.68944 1.08841 1.31197 1.23200 1.27294 0.94348 1.01284 0.92275 0.86185 0.80955 0.80161 0.79074 1.18098 1.19784 1.19122 1.20019 0.97914 0.90203 1.40244 0.89350 1.19189 0.93464 0.90553 0.91680 1.19217 0.92431 0.94160 0.88661 1.41738 1.47053 1.12367 1.38428 1.19724 1.02870 0.96343 1.01770 1.19604 1.02055 0.95187 0.99244 1.20556 0.99224 0.97137 0.94252 1.50628 0.99698 1.01296 1.00919 1.96132 1.56429 1.16991 1.73964 1.96188 1.70170 1.17024 1.55395 1.18878 1.01333 0.82816 0.94756 1.84863 1.56035 1.38006 1.45813 0.89300 0.78515 0.77213 0.87126 0.86251 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.81 11.17 56.00 0.63 -16.18 15 2 C 0.08 1.76 4.70 -15.13 -0.07 1.69 15 3 Si 0.91 16.33 29.68 -169.99 -5.05 11.28 15 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 7 C -0.46 -10.20 8.49 -35.89 -0.30 -10.50 15 8 H 0.09 1.81 7.37 -52.49 -0.39 1.43 15 9 C 0.06 1.33 5.72 -102.60 -0.59 0.75 15 10 C 0.16 3.28 6.96 -81.49 -0.57 2.71 15 11 N -0.86 -13.51 8.96 33.70 0.30 -13.21 15 12 C -0.18 -3.58 9.82 -39.53 -0.39 -3.96 15 13 C -0.14 -3.07 9.48 -39.57 -0.37 -3.44 15 14 C -0.02 -0.51 6.87 -79.95 -0.55 -1.06 15 15 N 0.01 0.30 4.98 33.96 0.17 0.47 15 16 O -0.26 -6.64 19.06 -31.57 -0.60 -7.24 15 17 O -0.20 -5.15 17.83 -39.28 -0.70 -5.85 15 18 C 0.07 1.81 6.39 -36.19 -0.23 1.58 15 19 O -0.44 -10.70 8.36 -40.14 -0.34 -11.04 15 20 H 0.29 6.44 8.27 -40.82 -0.34 6.10 15 21 H 0.39 4.84 8.83 -40.82 -0.36 4.48 15 22 H 0.40 6.03 7.52 -40.82 -0.31 5.72 15 23 H 0.11 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.12 2.49 7.47 -52.49 -0.39 2.09 15 25 H 0.36 7.40 9.06 45.56 0.41 7.82 15 LS Contribution 236.39 15.07 3.56 3.56 Total: -1.00 -28.73 236.39 -5.69 -34.42 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.59 Total: 16.04 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.07 Total: -12.25 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 1.10 Total: -28.92 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.64 Total: -24.13 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.05 Total: 11.28 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.73 -5.69 -34.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.938 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds