Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29407 * 1 3 3 Si 1.86810 * 119.99782 * 2 1 4 4 H 1.48501 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46761 * 299.99726 * 3 2 1 6 6 H 1.48494 * 109.47125 * 60.00164 * 3 2 1 7 7 C 1.46766 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00233 * 160.97031 * 7 2 1 9 9 C 1.38903 * 119.99963 * 340.97354 * 7 2 1 10 10 C 1.47062 * 120.96259 * 143.15721 * 9 7 2 11 11 N 1.37791 * 120.57747 * 0.02562 * 10 9 7 12 12 C 1.38569 * 118.83964 * 180.22747 * 10 9 7 13 13 C 1.38044 * 120.93490 * 359.77331 * 12 10 9 14 14 C 1.38456 * 122.15627 * 359.97438 * 13 12 10 15 15 N 1.48014 * 119.47429 * 180.02562 * 14 13 12 16 16 O 1.31703 * 120.00182 * 359.97438 * 15 14 13 17 17 O 1.31696 * 119.99945 * 179.97438 * 15 14 13 18 18 C 1.38018 * 121.04997 * 359.97438 * 14 13 12 19 19 O 1.35367 * 120.52499 * 179.97438 * 18 14 13 20 20 H 0.97003 * 120.00123 * 359.97438 * 1 2 3 21 21 H 0.97010 * 119.99411 * 180.22019 * 11 10 9 22 22 H 0.96997 * 120.00790 * 0.22037 * 11 10 9 23 23 H 1.07999 * 119.53438 * 179.74206 * 12 10 9 24 24 H 1.08001 * 118.92270 * 179.97438 * 13 12 10 25 25 H 0.96697 * 113.99452 * 92.55667 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6179 0.0000 4 1 3.6881 1.3465 -0.0006 5 1 1.8693 2.3964 -1.2126 6 1 1.8693 2.3965 1.2125 7 6 2.0280 -1.2710 0.0006 8 1 3.0637 -1.2967 -0.3044 9 6 1.3904 -2.4409 0.3933 10 6 1.6798 -3.7202 -0.2719 11 7 2.5932 -3.7839 -1.3016 12 6 1.0148 -4.8595 0.1522 13 6 0.0987 -4.8041 1.1834 14 6 -0.2002 -3.6228 1.8407 15 7 -1.1922 -3.6315 2.9393 16 8 -1.7830 -4.7570 3.2841 17 8 -1.4840 -2.5140 3.5719 18 6 0.4128 -2.4374 1.4887 19 8 0.1120 -1.2884 2.1383 20 1 -0.4850 0.8401 0.0004 21 1 2.7753 -4.6317 -1.7366 22 1 3.0541 -2.9813 -1.5916 23 1 1.2156 -5.8042 -0.3312 24 1 -0.4011 -5.7119 1.4873 25 1 0.6942 -1.0954 2.8858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -21.700890 kcal Electronic energy + Delta-G solvation = -15240.616898 eV Core-core repulsion = 12415.637528 eV Total energy + Delta-G solvation = -2824.979371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47981 -38.91909 -37.55741 -35.48762 -35.10646 -34.67363 -31.38011 -30.39073 -26.91992 -26.22629 -23.21390 -22.18547 -19.93104 -19.11905 -18.76416 -18.21574 -17.62102 -16.91101 -16.71367 -16.42740 -15.31421 -15.07846 -14.66006 -14.01022 -13.76278 -13.42208 -12.93581 -12.77168 -12.45609 -12.11383 -12.01792 -11.82652 -11.58965 -11.47474 -11.15507 -10.85026 -9.38303 -8.88415 -8.55947 -6.17904 -1.31188 0.67195 0.71642 0.88280 1.43782 1.48209 1.58189 2.17075 2.55119 3.11612 3.17099 3.73435 4.14733 4.38890 4.50641 4.64167 4.97978 5.13129 5.17606 5.40925 5.48308 5.80018 6.11560 6.19129 6.51316 6.57333 6.81844 7.18133 7.33689 8.17731 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.012257 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.418719 B = 2283.932739 C = 3193.610619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.047 3.953 3 Si 0.983 3.017 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.029 3.971 10 C 0.197 3.803 11 N -0.826 5.826 12 C -0.188 4.188 13 C -0.117 4.117 14 C -0.051 4.051 15 N 0.018 4.982 16 O -0.277 6.277 17 O -0.251 6.251 18 C 0.029 3.971 19 O -0.454 6.454 20 H 0.296 0.704 21 H 0.411 0.589 22 H 0.408 0.592 23 H 0.158 0.842 24 H 0.132 0.868 25 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.674 -1.515 -5.417 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.498 4.498 8 H 0.124 0.876 9 C 0.023 3.977 10 C 0.085 3.915 11 N -0.365 5.365 12 C -0.213 4.213 13 C -0.139 4.139 14 C -0.144 4.144 15 N 0.467 4.533 16 O -0.449 6.449 17 O -0.429 6.429 18 C -0.022 4.022 19 O -0.261 6.261 20 H 0.108 0.892 21 H 0.242 0.758 22 H 0.238 0.762 23 H 0.176 0.824 24 H 0.150 0.850 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.257 -1.368 -6.163 10.394 hybrid contribution -0.081 0.698 0.764 1.038 sum 8.177 -0.670 -5.399 9.821 Atomic orbital electron populations 1.69026 1.10668 1.32080 1.24963 1.28127 0.94712 1.04331 0.91015 0.85137 0.80092 0.75877 0.78506 1.16763 1.19378 1.20086 1.20348 0.98593 0.90502 1.40329 0.87599 1.19521 0.94089 0.92166 0.91968 1.19474 0.90902 0.93273 0.87874 1.41818 1.44363 1.14241 1.36050 1.20152 1.01961 0.98050 1.01166 1.20070 1.00988 0.94586 0.98240 1.21027 0.99850 0.98505 0.95033 1.50811 0.99968 1.00943 1.01558 1.96076 1.57052 1.17167 1.74623 1.96165 1.72088 1.17362 1.57243 1.19082 1.03937 0.82900 0.96301 1.84835 1.56647 1.38457 1.46121 0.89185 0.75787 0.76208 0.82433 0.85024 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -36.24 11.17 23.26 0.26 -35.98 15 2 C 0.05 2.01 4.70 87.28 0.41 2.42 15 3 Si 0.98 32.76 29.68 68.60 2.04 34.80 15 4 H -0.24 -7.56 7.11 99.48 0.71 -6.86 15 5 H -0.27 -8.72 7.11 99.48 0.71 -8.01 15 6 H -0.28 -9.52 7.11 99.48 0.71 -8.81 15 7 C -0.47 -20.23 8.49 24.66 0.21 -20.02 15 8 H 0.11 4.01 7.37 -2.91 -0.02 3.99 15 9 C 0.03 1.30 5.72 -18.56 -0.11 1.20 15 10 C 0.20 7.18 6.96 40.60 0.28 7.47 15 11 N -0.83 -21.55 8.96 -47.30 -0.42 -21.98 15 12 C -0.19 -6.57 9.82 22.30 0.22 -6.35 15 13 C -0.12 -4.90 9.48 22.28 0.21 -4.69 15 14 C -0.05 -2.51 6.87 36.38 0.25 -2.26 15 15 N 0.02 0.97 4.98 -46.46 -0.23 0.74 15 16 O -0.28 -14.57 19.06 3.51 0.07 -14.50 15 17 O -0.25 -14.07 17.83 10.90 0.19 -13.87 15 18 C 0.03 1.46 6.39 24.47 0.16 1.62 15 19 O -0.45 -23.09 8.36 -65.21 -0.55 -23.64 15 20 H 0.30 13.28 8.27 -92.71 -0.77 12.52 15 21 H 0.41 7.58 8.83 -92.70 -0.82 6.76 15 22 H 0.41 10.19 7.52 -92.71 -0.70 9.49 15 23 H 0.16 4.07 8.06 -2.91 -0.02 4.04 15 24 H 0.13 5.17 7.47 -2.91 -0.02 5.14 15 25 H 0.36 16.06 9.06 -74.06 -0.67 15.39 15 Total: -1.00 -63.48 236.39 2.09 -61.39 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.90 Total: 33.66 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 1.63 Total: -20.62 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.40 Total: -57.22 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.28 Total: -52.01 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.04 Total: 34.80 kcal Total: -63.48 2.09 -61.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.691 kcal (2) G-P(sol) polarization free energy of solvation -63.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds