Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29481 * 1 3 3 Si 1.86800 * 119.99694 * 2 1 4 4 H 1.48500 * 109.46832 * 239.99592 * 3 2 1 5 5 H 1.48497 * 109.47556 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46832 * 119.99898 * 3 2 1 7 7 C 1.46616 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99523 * 166.85717 * 7 2 1 9 9 C 1.39377 * 120.00550 * 346.84760 * 7 2 1 10 10 C 1.41598 * 120.63762 * 338.15804 * 9 7 2 11 11 C 1.36213 * 119.82175 * 180.02562 * 10 9 7 12 12 O 1.35928 * 119.37683 * 179.97438 * 11 10 9 13 13 C 1.39829 * 121.23964 * 359.97438 * 11 10 9 14 14 C 1.37603 * 121.34872 * 359.97438 * 13 11 10 15 15 N 1.48016 * 119.97031 * 180.02562 * 14 13 11 16 16 O 1.31697 * 120.00061 * 6.14844 * 15 14 13 17 17 O 1.31700 * 120.00214 * 186.15377 * 15 14 13 18 18 C 1.39296 * 120.06490 * 0.02562 * 14 13 11 19 19 N 1.37538 * 120.60191 * 180.02562 * 18 14 13 20 20 H 0.97001 * 120.00099 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.08758 * 359.97438 * 10 9 7 22 22 H 0.96706 * 113.99791 * 269.97697 * 12 11 10 23 23 H 1.08003 * 119.32643 * 180.27287 * 13 11 10 24 24 H 0.97004 * 119.99805 * 20.91990 * 19 18 14 25 25 H 0.96995 * 120.00469 * 200.92023 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2287 1.6178 0.0000 4 1 3.0825 1.6964 -1.2125 5 1 1.2638 2.7465 -0.0006 6 1 3.0825 1.6964 1.2126 7 6 2.0278 -1.2698 0.0006 8 1 3.0867 -1.2821 -0.2121 9 6 1.3584 -2.4609 0.2757 10 6 0.1346 -2.4529 0.9880 11 6 -0.5053 -3.6269 1.2483 12 8 -1.6793 -3.6088 1.9331 13 6 0.0228 -4.8502 0.8242 14 6 1.2078 -4.9155 0.1278 15 7 1.7386 -6.2270 -0.3070 16 8 1.0208 -7.3177 -0.1352 17 8 2.9289 -6.3033 -0.8656 18 6 1.9084 -3.7485 -0.1685 19 7 3.0935 -3.8009 -0.8644 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2898 -1.5187 1.3247 22 1 -1.5761 -3.6766 2.8923 23 1 -0.5127 -5.7621 1.0435 24 1 3.3023 -4.5760 -1.4090 25 1 3.7206 -3.0629 -0.8106 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719440.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = -25.520793 kcal Electronic energy + Delta-G solvation = -14973.190885 eV Core-core repulsion = 12148.045871 eV Total energy + Delta-G solvation = -2825.145014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80020 -39.25930 -37.92467 -35.96080 -35.38378 -34.28623 -32.33301 -29.64778 -27.19661 -26.75055 -23.14352 -22.66851 -20.38314 -19.03554 -18.58286 -18.14863 -17.96707 -17.51114 -16.78943 -16.66988 -15.55743 -15.53252 -14.71456 -14.05777 -13.83023 -13.31569 -13.07070 -12.92267 -12.49166 -12.11650 -12.05676 -11.86445 -11.71860 -11.48847 -11.20033 -11.11986 -10.07985 -9.03426 -8.72403 -6.36727 -1.40341 0.54287 0.63321 0.77751 1.42413 1.52581 1.57552 2.10473 2.37353 2.85085 3.10431 3.61883 3.93165 4.10235 4.65908 4.70891 4.81845 5.12208 5.22000 5.49333 5.71219 5.90465 6.05487 6.20514 6.24488 6.37633 6.56025 6.82465 7.11782 7.88634 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.009722 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.441796 B = 2879.474733 C = 3699.009803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.032 3.968 3 Si 1.005 2.995 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.415 4.415 8 H 0.116 0.884 9 C 0.062 3.938 10 C -0.244 4.244 11 C 0.153 3.847 12 O -0.512 6.512 13 C -0.299 4.299 14 C -0.025 4.025 15 N 0.029 4.971 16 O -0.317 6.317 17 O -0.270 6.270 18 C 0.221 3.779 19 N -0.799 5.799 20 H 0.311 0.689 21 H 0.139 0.861 22 H 0.400 0.600 23 H 0.108 0.892 24 H 0.411 0.589 25 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 7.795 1.658 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.440 4.440 8 H 0.134 0.866 9 C 0.057 3.943 10 C -0.266 4.266 11 C 0.107 3.893 12 O -0.323 6.323 13 C -0.321 4.321 14 C -0.126 4.126 15 N 0.457 4.543 16 O -0.472 6.472 17 O -0.433 6.433 18 C 0.102 3.898 19 N -0.351 5.351 20 H 0.124 0.876 21 H 0.156 0.844 22 H 0.257 0.743 23 H 0.126 0.874 24 H 0.250 0.750 25 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.315 8.108 1.179 8.838 hybrid contribution 0.404 -0.388 0.102 0.569 sum 3.719 7.720 1.281 8.665 Atomic orbital electron populations 1.69100 1.10503 1.33479 1.24205 1.28515 0.95402 1.05100 0.90517 0.84875 0.78696 0.73173 0.81005 1.17428 1.19119 1.17450 1.21087 0.97559 0.89434 1.35885 0.86612 1.18382 0.93594 0.88376 0.93985 1.21147 0.99850 0.97518 1.08132 1.17478 0.85312 0.90667 0.95881 1.84718 1.27458 1.96128 1.24001 1.19670 0.98822 0.98277 1.15364 1.19692 1.02106 0.77115 1.13712 1.50390 1.00869 1.04829 0.98189 1.96142 1.58225 1.24472 1.68349 1.95824 1.04022 1.94517 1.48913 1.19541 0.87887 0.91144 0.91222 1.42761 1.17304 1.26344 1.48721 0.87553 0.84361 0.74350 0.87362 0.74958 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -30.32 10.67 23.23 0.25 -30.07 15 2 C 0.03 1.19 5.43 87.23 0.47 1.66 15 3 Si 1.00 26.84 29.66 68.60 2.03 28.88 15 4 H -0.25 -6.45 7.11 99.48 0.71 -5.74 15 5 H -0.27 -6.95 7.11 99.48 0.71 -6.24 15 6 H -0.25 -6.55 7.11 99.48 0.71 -5.84 15 7 C -0.41 -16.37 9.02 24.73 0.22 -16.14 15 8 H 0.12 3.89 6.74 -2.91 -0.02 3.87 15 9 C 0.06 2.76 5.80 -19.91 -0.12 2.65 15 10 C -0.24 -11.21 8.65 22.63 0.20 -11.02 15 11 C 0.15 6.99 6.63 22.18 0.15 7.14 15 12 O -0.51 -20.38 13.46 -92.74 -1.25 -21.63 15 13 C -0.30 -14.48 9.47 22.50 0.21 -14.26 15 14 C -0.03 -1.22 6.89 36.48 0.25 -0.96 15 15 N 0.03 1.46 4.98 -46.21 -0.23 1.23 15 16 O -0.32 -16.95 19.13 3.52 0.07 -16.88 15 17 O -0.27 -12.63 16.50 3.51 0.06 -12.57 15 18 C 0.22 9.63 6.96 40.77 0.28 9.92 15 19 N -0.80 -28.47 8.40 -47.13 -0.40 -28.87 15 20 H 0.31 10.97 8.27 -92.71 -0.77 10.21 15 21 H 0.14 6.41 5.83 -2.91 -0.02 6.40 15 22 H 0.40 11.33 9.06 -74.05 -0.67 10.66 15 23 H 0.11 5.34 7.54 -2.91 -0.02 5.32 15 24 H 0.41 14.67 5.76 -92.71 -0.53 14.14 15 25 H 0.42 12.01 7.39 -92.71 -0.69 11.32 15 Total: -1.00 -58.47 233.57 1.61 -56.86 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.59 Total: 44.08 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 1.67 Total: -21.03 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.38 Total: -57.71 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.12 Total: -51.08 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: 2.03 Total: 28.88 kcal Total: -58.47 1.61 -56.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719440.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.334 kcal (2) G-P(sol) polarization free energy of solvation -58.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds