Wall clock time and date at job start Mon Mar 30 2020 02:50:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31333 * 1
3 3 Si 1.86802 * 120.00216 * 2 1
4 4 H 1.48497 * 109.47204 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.46885 * 300.00268 * 3 2 1
6 6 H 1.48504 * 109.46814 * 59.99733 * 3 2 1
7 7 C 1.39093 * 119.99953 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00111 * 180.02562 * 7 2 1
9 9 N 1.36805 * 120.00141 * 359.97438 * 7 2 1
10 10 C 1.34773 * 120.00499 * 180.02562 * 9 7 2
11 11 O 1.21568 * 119.99786 * 0.02562 * 10 9 7
12 12 C 1.48022 * 120.00534 * 180.02562 * 10 9 7
13 13 C 1.39811 * 120.86889 * 180.02562 * 12 10 9
14 14 C 1.38698 * 119.06450 * 180.02562 * 13 12 10
15 15 O 1.35684 * 119.58077 * 180.02562 * 14 13 12
16 16 N 1.32284 * 120.84575 * 0.02562 * 14 13 12
17 17 C 1.32284 * 121.91516 * 359.97438 * 16 14 13
18 18 O 1.35683 * 119.57696 * 179.97438 * 17 16 14
19 19 C 1.38698 * 120.84191 * 359.97438 * 17 16 14
20 20 H 0.97003 * 119.99364 * 0.02562 * 1 2 3
21 21 H 0.97006 * 119.99920 * 0.02562 * 9 7 2
22 22 H 1.07995 * 120.47113 * 359.97438 * 13 12 10
23 23 H 0.96703 * 114.00033 * 270.02426 * 15 14 13
24 24 H 0.96708 * 113.99882 * 90.00300 * 18 17 16
25 25 H 1.08002 * 120.46479 * 179.97438 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3133 0.0000 0.0000
3 14 2.2474 1.6177 0.0000
4 1 3.7074 1.3463 -0.0006
5 1 1.8886 2.3965 -1.2125
6 1 1.8886 2.3964 1.2125
7 6 2.0088 -1.2046 -0.0005
8 1 3.0888 -1.2046 -0.0001
9 7 1.3248 -2.3894 -0.0005
10 6 1.9986 -3.5566 -0.0005
11 8 3.2142 -3.5566 -0.0001
12 6 1.2585 -4.8385 -0.0011
13 6 1.9391 -6.0597 -0.0006
14 6 1.2082 -7.2385 -0.0017
15 8 1.8580 -8.4296 -0.0007
16 7 -0.1145 -7.2164 -0.0037
17 6 -0.7950 -6.0820 -0.0043
18 8 -2.1514 -6.1147 -0.0070
19 6 -0.1395 -4.8596 -0.0022
20 1 -0.4849 0.8401 -0.0004
21 1 0.3547 -2.3894 -0.0005
22 1 3.0188 -6.0850 -0.0002
23 1 2.0481 -8.7747 -0.8838
24 1 -2.5463 -6.1247 0.8758
25 1 -0.7012 -3.9371 -0.0031
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000606265363.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:23
Heat of formation + Delta-G solvation = -111.306278 kcal
Electronic energy + Delta-G solvation = -14566.965784 eV
Core-core repulsion = 11738.100832 eV
Total energy + Delta-G solvation = -2828.864952 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.063 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.85246 -40.05818 -38.99180 -37.05001 -36.21584 -33.92680 -33.11912 -30.59209
-27.63759 -25.24720 -24.40017 -21.93964 -20.48785 -19.69281 -19.23732 -18.18848
-17.56411 -17.03326 -16.47714 -16.25686 -16.06481 -15.72732 -15.51420 -14.72939
-13.70986 -13.63119 -13.34626 -13.23231 -12.98425 -12.50698 -12.33385 -12.11267
-11.68356 -11.04329 -10.98786 -10.50616 -10.20620 -9.90520 -8.64011 -6.07542
-0.42766 -0.20984 1.36937 1.42778 1.57004 1.86475 2.12748 2.25073
2.52246 2.84663 3.07996 3.18254 3.81335 3.89190 3.96200 4.27473
4.39719 4.66259 5.02529 5.22868 5.29310 5.81896 6.37985 6.44146
6.66466 6.73413 6.93046 7.29444 7.86059 8.52485
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.042762 B = 0.006968 C = 0.006011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.630568 B = 4017.183656 C = 4656.936872
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C -0.004 4.004
3 Si 1.001 2.999
4 H -0.270 1.270
5 H -0.267 1.267
6 H -0.267 1.267
7 C -0.336 4.336
8 H 0.090 0.910
9 N -0.535 5.535
10 C 0.454 3.546
11 O -0.628 6.628
12 C -0.035 4.035
13 C -0.156 4.156
14 C 0.341 3.659
15 O -0.479 6.479
16 N -0.535 5.535
17 C 0.343 3.657
18 O -0.480 6.480
19 C -0.176 4.176
20 H 0.286 0.714
21 H 0.400 0.600
22 H 0.151 0.849
23 H 0.424 0.576
24 H 0.425 0.575
25 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.512 -8.361 -0.002 9.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.207 4.207
3 Si 0.823 3.177
4 H -0.194 1.194
5 H -0.192 1.192
6 H -0.192 1.192
7 C -0.466 4.466
8 H 0.108 0.892
9 N -0.169 5.169
10 C 0.243 3.757
11 O -0.517 6.517
12 C -0.046 4.046
13 C -0.179 4.179
14 C 0.162 3.838
15 O -0.290 6.290
16 N -0.266 5.266
17 C 0.164 3.836
18 O -0.290 6.290
19 C -0.199 4.199
20 H 0.096 0.904
21 H 0.236 0.764
22 H 0.169 0.831
23 H 0.286 0.714
24 H 0.287 0.713
25 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -3.313 -8.897 -0.002 9.494
hybrid contribution 0.198 1.361 -0.003 1.375
sum -3.115 -7.536 -0.005 8.155
Atomic orbital electron populations
1.69620 1.07122 1.30358 1.46764 1.26245 0.96594 1.02841 0.94994
0.84752 0.78154 0.76103 0.78650 1.19419 1.19234 1.19180 1.19916
0.93379 0.83380 1.49916 0.89234 1.41893 1.09823 1.04702 1.60483
1.18083 0.87251 0.83952 0.86397 1.90579 1.14659 1.87440 1.59015
1.20216 0.93418 0.93908 0.97047 1.22145 1.02688 0.90392 1.02653
1.18444 0.85132 0.85593 0.94620 1.84739 1.74635 1.33413 1.36173
1.66468 1.10177 1.32958 1.17030 1.18467 0.84902 0.85924 0.94335
1.84746 1.12541 1.95531 1.36198 1.22359 0.93469 0.99986 1.04057
0.90369 0.76399 0.83131 0.71367 0.71339 0.82901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -45.39 13.05 21.69 0.28 -45.10 15
2 C 0.00 -0.19 5.50 84.97 0.47 0.28 15
3 Si 1.00 40.02 29.55 68.60 2.03 42.05 15
4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15
5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15
6 H -0.27 -10.16 7.11 99.48 0.71 -9.46 15
7 C -0.34 -18.29 9.68 84.12 0.81 -17.48 15
8 H 0.09 5.17 7.15 -2.91 -0.02 5.15 15
9 N -0.54 -26.98 5.23 -309.49 -1.62 -28.60 15
10 C 0.45 22.21 7.74 86.84 0.67 22.88 15
11 O -0.63 -34.98 16.01 -3.93 -0.06 -35.04 15
12 C -0.03 -1.36 5.90 -19.92 -0.12 -1.47 15
13 C -0.16 -5.39 9.61 22.76 0.22 -5.17 15
14 C 0.34 10.34 7.73 84.73 0.66 10.99 15
15 O -0.48 -11.60 13.56 -90.02 -1.22 -12.82 15
16 N -0.53 -16.81 10.38 -422.19 -4.38 -21.19 15
17 C 0.34 10.33 7.73 84.73 0.66 10.99 15
18 O -0.48 -11.73 13.56 -90.01 -1.22 -12.95 15
19 C -0.18 -5.87 9.54 22.76 0.22 -5.65 15
20 H 0.29 13.31 8.31 -92.71 -0.77 12.54 15
21 H 0.40 18.84 6.03 -92.70 -0.56 18.28 15
22 H 0.15 5.21 7.74 -2.91 -0.02 5.19 15
23 H 0.42 5.54 9.06 -74.06 -0.67 4.87 15
24 H 0.42 5.75 9.06 -74.05 -0.67 5.07 15
25 H 0.15 4.90 6.53 -2.91 -0.02 4.88 15
Total: -1.00 -68.27 239.97 -3.23 -71.50
By element:
Atomic # 1 Polarization: 27.39 SS G_CDS: -0.61 Total: 26.78 kcal
Atomic # 6 Polarization: 11.79 SS G_CDS: 3.58 Total: 15.37 kcal
Atomic # 7 Polarization: -89.17 SS G_CDS: -5.72 Total: -94.89 kcal
Atomic # 8 Polarization: -58.31 SS G_CDS: -2.50 Total: -60.81 kcal
Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal
Total: -68.27 -3.23 -71.50 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000606265363.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.806 kcal
(2) G-P(sol) polarization free energy of solvation -68.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds