Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 C 1.50699 * 109.47269 * 59.99670 * 9 7 2 12 12 O 1.20827 * 120.00172 * 119.99978 * 11 9 7 13 13 O 1.34231 * 120.00242 * 300.00444 * 11 9 7 14 14 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 15 15 C 1.38245 * 119.97216 * 299.72256 * 14 9 7 16 16 C 1.38197 * 120.02268 * 179.72300 * 15 14 9 17 17 C 1.38461 * 119.97700 * 0.53431 * 16 15 14 18 18 F 1.35100 * 120.02834 * 179.72547 * 17 16 15 19 19 C 1.38457 * 119.94689 * 359.73964 * 17 16 15 20 20 C 1.38205 * 119.97177 * 0.02562 * 19 17 16 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 0.96696 * 117.00233 * 180.02562 * 13 11 9 23 23 H 1.08002 * 119.98591 * 359.97438 * 15 14 9 24 24 H 1.08003 * 120.01398 * 180.29754 * 16 15 14 25 25 H 1.07994 * 120.01764 * 179.97438 * 19 17 16 26 26 H 1.08010 * 119.98582 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3849 -2.5792 -1.2302 12 8 0.5464 -3.4746 -2.0253 13 8 -0.5657 -1.6558 -1.4432 14 6 2.2302 -3.6447 0.0005 15 6 3.1303 -3.7838 -1.0395 16 6 4.0326 -4.8306 -1.0377 17 6 4.0275 -5.7465 0.0007 18 9 4.9055 -6.7733 0.0007 19 6 3.1218 -5.6093 1.0389 20 6 2.2237 -4.5589 1.0374 21 1 -0.4850 0.8401 0.0004 22 1 -1.0963 -1.7491 -2.2462 23 1 3.1310 -3.0718 -1.8516 24 1 4.7389 -4.9364 -1.8478 25 1 3.1166 -6.3233 1.8491 26 1 1.5167 -4.4520 1.8470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709498312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = -109.630113 kcal Electronic energy + Delta-G solvation = -14972.071845 eV Core-core repulsion = 12123.359616 eV Total energy + Delta-G solvation = -2848.712230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.44099 -39.26749 -37.92030 -34.56950 -33.62794 -31.17080 -30.54385 -27.33808 -24.02980 -22.44699 -21.77371 -19.68345 -17.14615 -17.00941 -16.48505 -15.77450 -15.16112 -15.10439 -14.60262 -14.29977 -13.97651 -13.33091 -12.95572 -12.76043 -12.22015 -11.79785 -11.34732 -11.32811 -11.03965 -10.70061 -10.47455 -10.06376 -9.99966 -9.66189 -9.32724 -8.54216 -8.45141 -7.88618 -6.20241 -4.37796 1.77094 1.85120 3.18437 3.27226 3.31155 3.71400 4.14002 4.31118 4.75143 4.78866 5.09900 5.29815 5.35033 5.74105 5.91891 5.98029 6.42220 6.56029 6.65852 6.81714 6.87988 6.92269 7.42882 7.49143 7.67796 7.77349 7.95566 8.61875 9.28236 9.45682 10.78154 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.008971 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.347287 B = 3120.304115 C = 3533.224460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.085 3.915 10 H 0.069 0.931 11 C 0.486 3.514 12 O -0.578 6.578 13 O -0.445 6.445 14 C -0.041 4.041 15 C -0.054 4.054 16 C -0.160 4.160 17 C 0.072 3.928 18 F -0.153 7.153 19 C -0.160 4.160 20 C -0.095 4.095 21 H 0.266 0.734 22 H 0.351 0.649 23 H 0.129 0.871 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -4.641 0.602 5.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.066 3.934 10 H 0.087 0.913 11 C 0.332 3.668 12 O -0.473 6.473 13 O -0.247 6.247 14 C -0.041 4.041 15 C -0.072 4.072 16 C -0.179 4.179 17 C 0.053 3.947 18 F -0.132 7.132 19 C -0.179 4.179 20 C -0.113 4.113 21 H 0.076 0.924 22 H 0.204 0.796 23 H 0.147 0.853 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.685 -4.728 0.778 5.493 hybrid contribution 0.218 0.667 -0.642 0.951 sum 2.903 -4.061 0.137 4.994 Atomic orbital electron populations 1.69898 1.05511 1.26854 1.43761 1.25095 0.95052 0.99587 0.94689 0.86396 0.80252 0.82898 0.77783 1.19486 1.20829 1.20645 1.20869 0.93304 0.87876 1.54445 0.91063 1.17613 0.91098 0.92913 0.91778 0.91317 1.25049 0.77281 0.76178 0.88296 1.90545 1.70564 1.36939 1.49217 1.85590 1.44815 1.50518 1.43755 1.19982 0.96055 0.94759 0.93319 1.20865 0.92531 0.95860 0.97928 1.21048 1.01970 0.96268 0.98628 1.17624 0.91824 0.87585 0.97700 1.91422 1.67581 1.57383 1.96769 1.20931 0.97553 1.00675 0.98726 1.20903 0.98331 0.93314 0.98751 0.92400 0.79572 0.85305 0.85661 0.85615 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.30 10.00 55.43 0.55 -20.75 15 2 C 0.06 1.60 5.23 -17.82 -0.09 1.51 15 3 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.53 -13.35 8.24 -34.44 -0.28 -13.63 15 8 H 0.07 1.80 7.61 -52.49 -0.40 1.40 15 9 C 0.09 2.02 2.43 -94.07 -0.23 1.79 15 10 H 0.07 1.66 7.88 -51.93 -0.41 1.25 15 11 C 0.49 11.75 7.45 36.01 0.27 12.02 15 12 O -0.58 -14.44 15.84 -18.75 -0.30 -14.74 15 13 O -0.44 -10.29 9.85 -39.26 -0.39 -10.68 15 14 C -0.04 -0.87 4.36 -104.62 -0.46 -1.32 15 15 C -0.05 -1.10 7.93 -39.59 -0.31 -1.41 15 16 C -0.16 -2.90 10.03 -39.51 -0.40 -3.29 15 17 C 0.07 1.27 7.30 -39.42 -0.29 0.98 15 18 F -0.15 -2.58 17.27 2.25 0.04 -2.54 15 19 C -0.16 -2.70 10.03 -39.51 -0.40 -3.10 15 20 C -0.09 -1.75 9.67 -39.59 -0.38 -2.13 15 21 H 0.27 6.53 8.31 -40.82 -0.34 6.19 15 22 H 0.35 6.51 9.10 45.56 0.41 6.92 15 23 H 0.13 2.71 7.97 -52.49 -0.42 2.29 15 24 H 0.13 1.95 8.06 -52.48 -0.42 1.53 15 25 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.13 2.08 7.95 -52.48 -0.42 1.66 15 LS Contribution 241.40 15.07 3.64 3.64 Total: -1.00 -28.15 241.40 -5.25 -33.40 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -1.21 Total: 5.55 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.57 Total: -8.58 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.55 Total: -20.75 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.68 Total: -25.41 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.15 -5.25 -33.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709498312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.232 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds