Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 C 1.50699 * 109.47269 * 59.99670 * 9 7 2 12 12 O 1.20827 * 120.00172 * 119.99978 * 11 9 7 13 13 O 1.34231 * 120.00242 * 300.00444 * 11 9 7 14 14 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 15 15 C 1.38245 * 119.97216 * 299.72256 * 14 9 7 16 16 C 1.38197 * 120.02268 * 179.72300 * 15 14 9 17 17 C 1.38461 * 119.97700 * 0.53431 * 16 15 14 18 18 F 1.35100 * 120.02834 * 179.72547 * 17 16 15 19 19 C 1.38457 * 119.94689 * 359.73964 * 17 16 15 20 20 C 1.38205 * 119.97177 * 0.02562 * 19 17 16 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 0.96696 * 117.00233 * 180.02562 * 13 11 9 23 23 H 1.08002 * 119.98591 * 359.97438 * 15 14 9 24 24 H 1.08003 * 120.01398 * 180.29754 * 16 15 14 25 25 H 1.07994 * 120.01764 * 179.97438 * 19 17 16 26 26 H 1.08010 * 119.98582 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3849 -2.5792 -1.2302 12 8 0.5464 -3.4746 -2.0253 13 8 -0.5657 -1.6558 -1.4432 14 6 2.2302 -3.6447 0.0005 15 6 3.1303 -3.7838 -1.0395 16 6 4.0326 -4.8306 -1.0377 17 6 4.0275 -5.7465 0.0007 18 9 4.9055 -6.7733 0.0007 19 6 3.1218 -5.6093 1.0389 20 6 2.2237 -4.5589 1.0374 21 1 -0.4850 0.8401 0.0004 22 1 -1.0963 -1.7491 -2.2462 23 1 3.1310 -3.0718 -1.8516 24 1 4.7389 -4.9364 -1.8478 25 1 3.1166 -6.3233 1.8491 26 1 1.5167 -4.4520 1.8470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709498312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = -125.675766 kcal Electronic energy + Delta-G solvation = -14972.767637 eV Core-core repulsion = 12123.359616 eV Total energy + Delta-G solvation = -2849.408022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.80525 -41.02206 -39.52800 -36.44639 -35.45968 -32.89586 -31.97394 -29.01562 -25.90479 -23.89546 -23.39244 -21.39728 -18.91262 -18.54075 -18.34758 -17.37452 -16.74853 -16.51205 -16.38680 -16.02944 -15.68579 -14.86695 -14.37314 -14.29022 -13.96799 -13.43066 -13.15216 -12.90167 -12.79754 -12.42449 -11.98047 -11.93507 -11.76599 -11.45236 -11.22193 -10.42480 -9.91523 -9.39190 -8.10724 -6.34116 0.29942 0.42039 1.44717 1.48643 1.58275 1.81451 2.42303 2.66873 3.08173 3.18336 3.36873 3.90742 4.02755 4.17332 4.49992 4.50935 4.88431 4.98582 5.19493 5.21830 5.23567 5.39957 5.72799 5.80686 5.93518 6.04909 6.14443 6.68124 7.34171 7.65555 8.87147 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.008971 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.347287 B = 3120.304115 C = 3533.224460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.084 3.916 10 H 0.058 0.942 11 C 0.485 3.515 12 O -0.590 6.590 13 O -0.453 6.453 14 C -0.068 4.068 15 C -0.072 4.072 16 C -0.159 4.159 17 C 0.071 3.929 18 F -0.145 7.145 19 C -0.148 4.148 20 C -0.098 4.098 21 H 0.268 0.732 22 H 0.371 0.629 23 H 0.112 0.888 24 H 0.148 0.852 25 H 0.161 0.839 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -5.199 1.109 6.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.065 3.935 10 H 0.075 0.925 11 C 0.332 3.668 12 O -0.486 6.486 13 O -0.257 6.257 14 C -0.068 4.068 15 C -0.090 4.090 16 C -0.177 4.177 17 C 0.052 3.948 18 F -0.124 7.124 19 C -0.167 4.167 20 C -0.115 4.115 21 H 0.077 0.923 22 H 0.227 0.773 23 H 0.130 0.870 24 H 0.166 0.834 25 H 0.179 0.821 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.390 -5.289 1.282 6.412 hybrid contribution -0.017 0.777 -0.817 1.127 sum 3.374 -4.512 0.466 5.653 Atomic orbital electron populations 1.70002 1.06399 1.27558 1.44230 1.25736 0.95832 1.02184 0.94374 0.85506 0.78989 0.79460 0.77751 1.19549 1.20776 1.20059 1.21033 0.93144 0.88989 1.54838 0.91782 1.17562 0.91325 0.93636 0.90980 0.92457 1.25126 0.77342 0.76006 0.88369 1.90521 1.70975 1.37440 1.49669 1.85519 1.44880 1.50253 1.45074 1.19970 0.96491 0.95281 0.95060 1.20776 0.93752 0.96789 0.97717 1.21212 1.01585 0.95421 0.99507 1.17726 0.91903 0.87462 0.97668 1.91446 1.67320 1.56937 1.96720 1.21256 0.95990 1.00296 0.99127 1.21113 0.99021 0.93022 0.98390 0.92266 0.77341 0.86976 0.83448 0.82105 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.67 10.00 21.45 0.21 -43.46 15 2 C 0.02 1.24 5.23 84.66 0.44 1.68 15 3 Si 0.96 40.32 29.54 68.60 2.03 42.34 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.54 -27.69 8.24 25.60 0.21 -27.48 15 8 H 0.06 3.27 7.61 -2.91 -0.02 3.25 15 9 C 0.08 4.04 2.43 -13.03 -0.03 4.00 15 10 H 0.06 2.82 7.88 -2.39 -0.02 2.80 15 11 C 0.48 23.64 7.45 71.24 0.53 24.17 15 12 O -0.59 -29.62 15.84 21.96 0.35 -29.28 15 13 O -0.45 -21.01 9.85 -51.42 -0.51 -21.52 15 14 C -0.07 -2.86 4.36 -19.86 -0.09 -2.95 15 15 C -0.07 -2.94 7.93 22.26 0.18 -2.76 15 16 C -0.16 -5.49 10.03 22.31 0.22 -5.27 15 17 C 0.07 2.34 7.30 22.38 0.16 2.50 15 18 F -0.15 -4.47 17.27 44.97 0.78 -3.70 15 19 C -0.15 -4.56 10.03 22.31 0.22 -4.34 15 20 C -0.10 -3.43 9.67 22.26 0.22 -3.22 15 21 H 0.27 13.08 8.31 -92.71 -0.77 12.31 15 22 H 0.37 13.63 9.10 -74.06 -0.67 12.96 15 23 H 0.11 4.84 7.97 -2.91 -0.02 4.82 15 24 H 0.15 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.16 3.79 8.06 -2.91 -0.02 3.76 15 26 H 0.15 4.49 7.95 -2.91 -0.02 4.47 15 Total: -1.00 -58.32 241.40 5.47 -52.85 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.54 Total: 16.42 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 2.07 Total: -13.67 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.21 Total: -43.46 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.16 Total: -50.80 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -58.32 5.47 -52.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709498312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.822 kcal (2) G-P(sol) polarization free energy of solvation -58.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds