Wall clock time and date at job start Mon Mar 30 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36556 * 123.74030 * 2 1 4 4 O 1.21217 * 127.17370 * 16.53022 * 3 2 1 5 5 C 1.50724 * 105.65540 * 196.51540 * 3 2 1 6 6 H 1.09005 * 114.03380 * 84.95458 * 5 3 2 7 7 N 1.46230 * 119.56566 * 223.69274 * 5 3 2 8 8 N 1.26032 * 108.35835 * 129.82960 * 7 5 3 9 9 N 1.43380 * 112.24148 * 356.69880 * 8 7 5 10 10 C 1.36800 * 129.50679 * 151.36974 * 9 8 7 11 11 H 1.07996 * 119.99818 * 174.36407 * 10 9 8 12 12 C 1.38983 * 119.99984 * 354.36344 * 10 9 8 13 13 N 1.31402 * 120.00214 * 5.82365 * 12 10 9 14 14 Si 1.86801 * 119.99916 * 185.82486 * 12 10 9 15 15 H 1.48499 * 109.47288 * 94.97487 * 14 12 10 16 16 H 1.48501 * 109.47117 * 214.97441 * 14 12 10 17 17 H 1.48504 * 109.47124 * 334.97753 * 14 12 10 18 18 C 1.40225 * 100.97899 * 331.35755 * 9 8 7 19 19 H 1.08998 * 101.26244 * 299.77445 * 18 9 8 20 20 C 1.37240 * 123.74224 * 180.02562 * 2 1 3 21 21 O 1.21234 * 127.44398 * 13.80636 * 20 2 1 22 22 H 1.09006 * 109.47646 * 269.98086 * 1 2 3 23 23 H 1.09005 * 109.47257 * 29.98091 * 1 2 3 24 24 H 1.08998 * 109.47334 * 149.97895 * 1 2 3 25 25 H 0.97001 * 119.99688 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1355 0.0000 4 8 1.8603 2.2589 0.2748 5 6 3.6064 0.7009 -0.4126 6 1 3.7513 0.6468 -1.4916 7 7 4.7701 1.2227 0.3028 8 7 5.5025 0.2511 0.6314 9 7 4.9246 -1.0106 0.2707 10 6 5.5395 -2.1921 -0.0412 11 1 4.9490 -3.0815 -0.2043 12 6 6.9241 -2.2479 -0.1481 13 7 7.6499 -1.1972 0.1614 14 14 7.7533 -3.8167 -0.7319 15 1 7.9978 -3.7328 -2.1942 16 1 9.0470 -3.9862 -0.0227 17 1 6.8744 -4.9783 -0.4428 18 6 3.5575 -0.7033 0.3249 19 1 3.4476 -0.4049 1.3675 20 6 2.2273 -1.1412 -0.0005 21 8 1.8594 -2.2732 -0.2307 22 1 -0.3634 -0.0003 1.0277 23 1 -0.3634 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5141 25 1 8.6162 -1.2361 0.0864 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954271.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:40 Heat of formation + Delta-G solvation = 100.584285 kcal Electronic energy + Delta-G solvation = -15397.540328 eV Core-core repulsion = 12610.156392 eV Total energy + Delta-G solvation = -2787.383937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.28366 -38.85073 -38.38815 -35.62003 -33.66843 -31.86073 -30.76808 -26.53988 -26.23773 -24.67274 -21.72495 -21.05979 -19.53395 -17.98376 -17.35867 -16.75536 -15.98383 -15.23269 -15.14456 -14.74716 -14.47214 -14.25139 -13.24482 -12.95389 -12.81616 -12.65347 -11.64624 -11.59983 -11.18063 -11.12651 -10.96767 -10.42320 -10.01628 -9.71349 -9.62962 -9.42764 -9.37624 -7.80967 -6.45060 -3.92088 1.59527 2.27274 2.43590 2.69451 3.02421 3.14846 3.19852 3.23664 3.99062 4.29168 4.50425 4.85202 4.89611 5.11344 5.18083 5.27305 5.47203 5.56348 5.63977 5.88746 6.40453 6.61752 7.26118 7.33002 7.82220 8.07568 8.79185 9.26391 9.52100 10.62149 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.042567 B = 0.009590 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.628001 B = 2918.907614 C = 3496.394912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.559 3.441 4 O -0.456 6.456 5 C -0.035 4.035 6 H 0.139 0.861 7 N -0.355 5.355 8 N 0.126 4.874 9 N -0.348 5.348 10 C -0.272 4.272 11 H 0.115 0.885 12 C 0.027 3.973 13 N -0.825 5.825 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.033 3.967 19 H 0.070 0.930 20 C 0.585 3.415 21 O -0.460 6.460 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 -0.727 -1.706 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C 0.346 3.654 4 O -0.324 6.324 5 C -0.153 4.153 6 H 0.156 0.844 7 N -0.258 5.258 8 N 0.141 4.859 9 N -0.162 5.162 10 C -0.406 4.406 11 H 0.133 0.867 12 C -0.183 4.183 13 N -0.461 5.461 14 Si 0.759 3.241 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.083 4.083 19 H 0.087 0.913 20 C 0.373 3.627 21 O -0.329 6.329 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.526 0.070 -1.181 8.608 hybrid contribution -0.522 -1.291 -0.702 1.559 sum -9.049 -1.222 -1.882 9.323 Atomic orbital electron populations 1.21862 0.77087 1.04349 1.03242 1.48396 1.08935 1.07543 1.70196 1.20829 0.86941 0.83211 0.74412 1.90708 1.78192 1.20149 1.43303 1.25440 0.92860 0.94139 1.02857 0.84370 1.78441 1.05455 1.20245 1.21637 1.81160 1.14379 0.85582 1.04764 1.46862 0.96211 1.07999 1.65125 1.19609 0.90753 0.84625 1.45629 0.86721 1.25322 0.96027 0.99046 0.97918 1.70009 1.06604 1.28366 1.41140 0.85802 0.78964 0.80597 0.78777 1.20213 1.20459 1.19162 1.20848 0.89488 0.96966 1.00982 0.91339 1.18506 0.86347 0.83658 0.74164 1.90745 1.79887 1.18968 1.43281 0.91358 0.89783 0.89452 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.85 59.84 0.65 1.50 15 2 N -0.60 -9.42 3.12 -124.08 -0.39 -9.81 15 3 C 0.56 10.05 7.64 -10.16 -0.08 9.97 15 4 O -0.46 -8.91 17.90 5.61 0.10 -8.81 15 5 C -0.04 -0.72 4.83 -66.07 -0.32 -1.04 15 6 H 0.14 2.62 8.14 -51.93 -0.42 2.20 15 7 N -0.35 -8.44 12.61 -3.33 -0.04 -8.48 15 8 N 0.13 3.27 11.37 60.35 0.69 3.95 15 9 N -0.35 -8.71 3.69 -58.28 -0.22 -8.93 15 10 C -0.27 -6.92 10.43 -15.06 -0.16 -7.08 15 11 H 0.12 2.76 7.84 -52.49 -0.41 2.35 15 12 C 0.03 0.67 5.50 -17.46 -0.10 0.58 15 13 N -0.82 -22.17 12.12 55.50 0.67 -21.50 15 14 Si 0.93 19.17 29.56 -169.99 -5.02 14.15 15 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 17 H -0.27 -5.33 7.11 56.52 0.40 -4.92 15 18 C 0.03 0.70 4.07 -72.28 -0.29 0.41 15 19 H 0.07 1.50 7.14 -51.93 -0.37 1.13 15 20 C 0.59 10.71 7.64 -12.97 -0.10 10.62 15 21 O -0.46 -9.06 17.78 5.60 0.10 -8.96 15 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.08 0.82 8.12 -51.93 -0.42 0.40 15 24 H 0.09 0.87 7.96 -51.93 -0.41 0.46 15 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 236.09 15.07 3.56 3.56 Total: -1.00 -29.50 236.09 -2.54 -32.05 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -1.60 Total: -2.17 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -0.39 Total: 14.96 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.71 Total: -44.77 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.20 Total: -17.77 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.50 -2.54 -32.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954271.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.631 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds