Wall clock time and date at job start Mon Mar 30 2020 03:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36556 * 123.74030 * 2 1
4 4 O 1.21217 * 127.17370 * 16.53022 * 3 2 1
5 5 C 1.50724 * 105.65540 * 196.51540 * 3 2 1
6 6 H 1.09005 * 114.03380 * 84.95458 * 5 3 2
7 7 N 1.46230 * 119.56566 * 223.69274 * 5 3 2
8 8 N 1.26032 * 108.35835 * 129.82960 * 7 5 3
9 9 N 1.43380 * 112.24148 * 356.69880 * 8 7 5
10 10 C 1.36800 * 129.50679 * 151.36974 * 9 8 7
11 11 H 1.07996 * 119.99818 * 174.36407 * 10 9 8
12 12 C 1.38983 * 119.99984 * 354.36344 * 10 9 8
13 13 N 1.31402 * 120.00214 * 5.82365 * 12 10 9
14 14 Si 1.86801 * 119.99916 * 185.82486 * 12 10 9
15 15 H 1.48499 * 109.47288 * 94.97487 * 14 12 10
16 16 H 1.48501 * 109.47117 * 214.97441 * 14 12 10
17 17 H 1.48504 * 109.47124 * 334.97753 * 14 12 10
18 18 C 1.40225 * 100.97899 * 331.35755 * 9 8 7
19 19 H 1.08998 * 101.26244 * 299.77445 * 18 9 8
20 20 C 1.37240 * 123.74224 * 180.02562 * 2 1 3
21 21 O 1.21234 * 127.44398 * 13.80636 * 20 2 1
22 22 H 1.09006 * 109.47646 * 269.98086 * 1 2 3
23 23 H 1.09005 * 109.47257 * 29.98091 * 1 2 3
24 24 H 1.08998 * 109.47334 * 149.97895 * 1 2 3
25 25 H 0.97001 * 119.99688 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2234 1.1355 0.0000
4 8 1.8603 2.2589 0.2748
5 6 3.6064 0.7009 -0.4126
6 1 3.7513 0.6468 -1.4916
7 7 4.7701 1.2227 0.3028
8 7 5.5025 0.2511 0.6314
9 7 4.9246 -1.0106 0.2707
10 6 5.5395 -2.1921 -0.0412
11 1 4.9490 -3.0815 -0.2043
12 6 6.9241 -2.2479 -0.1481
13 7 7.6499 -1.1972 0.1614
14 14 7.7533 -3.8167 -0.7319
15 1 7.9978 -3.7328 -2.1942
16 1 9.0470 -3.9862 -0.0227
17 1 6.8744 -4.9783 -0.4428
18 6 3.5575 -0.7033 0.3249
19 1 3.4476 -0.4049 1.3675
20 6 2.2273 -1.1412 -0.0005
21 8 1.8594 -2.2732 -0.2307
22 1 -0.3634 -0.0003 1.0277
23 1 -0.3634 0.8902 -0.5136
24 1 -0.3634 -0.8898 -0.5141
25 1 8.6162 -1.2361 0.0864
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709954271.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:40
Heat of formation + Delta-G solvation = 100.584285 kcal
Electronic energy + Delta-G solvation = -15397.540328 eV
Core-core repulsion = 12610.156392 eV
Total energy + Delta-G solvation = -2787.383937 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.070 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.28366 -38.85073 -38.38815 -35.62003 -33.66843 -31.86073 -30.76808 -26.53988
-26.23773 -24.67274 -21.72495 -21.05979 -19.53395 -17.98376 -17.35867 -16.75536
-15.98383 -15.23269 -15.14456 -14.74716 -14.47214 -14.25139 -13.24482 -12.95389
-12.81616 -12.65347 -11.64624 -11.59983 -11.18063 -11.12651 -10.96767 -10.42320
-10.01628 -9.71349 -9.62962 -9.42764 -9.37624 -7.80967 -6.45060 -3.92088
1.59527 2.27274 2.43590 2.69451 3.02421 3.14846 3.19852 3.23664
3.99062 4.29168 4.50425 4.85202 4.89611 5.11344 5.18083 5.27305
5.47203 5.56348 5.63977 5.88746 6.40453 6.61752 7.26118 7.33002
7.82220 8.07568 8.79185 9.26391 9.52100 10.62149
Molecular weight = 224.07amu
Principal moments of inertia in cm(-1)
A = 0.042567 B = 0.009590 C = 0.008006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.628001 B = 2918.907614 C = 3496.394912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.600 5.600
3 C 0.559 3.441
4 O -0.456 6.456
5 C -0.035 4.035
6 H 0.139 0.861
7 N -0.355 5.355
8 N 0.126 4.874
9 N -0.348 5.348
10 C -0.272 4.272
11 H 0.115 0.885
12 C 0.027 3.973
13 N -0.825 5.825
14 Si 0.933 3.067
15 H -0.276 1.276
16 H -0.279 1.279
17 H -0.267 1.267
18 C 0.033 3.967
19 H 0.070 0.930
20 C 0.585 3.415
21 O -0.460 6.460
22 H 0.068 0.932
23 H 0.083 0.917
24 H 0.087 0.913
25 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.073 -0.727 -1.706 9.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.351 5.351
3 C 0.346 3.654
4 O -0.324 6.324
5 C -0.153 4.153
6 H 0.156 0.844
7 N -0.258 5.258
8 N 0.141 4.859
9 N -0.162 5.162
10 C -0.406 4.406
11 H 0.133 0.867
12 C -0.183 4.183
13 N -0.461 5.461
14 Si 0.759 3.241
15 H -0.202 1.202
16 H -0.205 1.205
17 H -0.192 1.192
18 C -0.083 4.083
19 H 0.087 0.913
20 C 0.373 3.627
21 O -0.329 6.329
22 H 0.086 0.914
23 H 0.102 0.898
24 H 0.105 0.895
25 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -8.526 0.070 -1.181 8.608
hybrid contribution -0.522 -1.291 -0.702 1.559
sum -9.049 -1.222 -1.882 9.323
Atomic orbital electron populations
1.21862 0.77087 1.04349 1.03242 1.48396 1.08935 1.07543 1.70196
1.20829 0.86941 0.83211 0.74412 1.90708 1.78192 1.20149 1.43303
1.25440 0.92860 0.94139 1.02857 0.84370 1.78441 1.05455 1.20245
1.21637 1.81160 1.14379 0.85582 1.04764 1.46862 0.96211 1.07999
1.65125 1.19609 0.90753 0.84625 1.45629 0.86721 1.25322 0.96027
0.99046 0.97918 1.70009 1.06604 1.28366 1.41140 0.85802 0.78964
0.80597 0.78777 1.20213 1.20459 1.19162 1.20848 0.89488 0.96966
1.00982 0.91339 1.18506 0.86347 0.83658 0.74164 1.90745 1.79887
1.18968 1.43281 0.91358 0.89783 0.89452 0.91609
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.85 10.85 59.84 0.65 1.50 15
2 N -0.60 -9.42 3.12 -124.08 -0.39 -9.81 15
3 C 0.56 10.05 7.64 -10.16 -0.08 9.97 15
4 O -0.46 -8.91 17.90 5.61 0.10 -8.81 15
5 C -0.04 -0.72 4.83 -66.07 -0.32 -1.04 15
6 H 0.14 2.62 8.14 -51.93 -0.42 2.20 15
7 N -0.35 -8.44 12.61 -3.33 -0.04 -8.48 15
8 N 0.13 3.27 11.37 60.35 0.69 3.95 15
9 N -0.35 -8.71 3.69 -58.28 -0.22 -8.93 15
10 C -0.27 -6.92 10.43 -15.06 -0.16 -7.08 15
11 H 0.12 2.76 7.84 -52.49 -0.41 2.35 15
12 C 0.03 0.67 5.50 -17.46 -0.10 0.58 15
13 N -0.82 -22.17 12.12 55.50 0.67 -21.50 15
14 Si 0.93 19.17 29.56 -169.99 -5.02 14.15 15
15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15
16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15
17 H -0.27 -5.33 7.11 56.52 0.40 -4.92 15
18 C 0.03 0.70 4.07 -72.28 -0.29 0.41 15
19 H 0.07 1.50 7.14 -51.93 -0.37 1.13 15
20 C 0.59 10.71 7.64 -12.97 -0.10 10.62 15
21 O -0.46 -9.06 17.78 5.60 0.10 -8.96 15
22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15
23 H 0.08 0.82 8.12 -51.93 -0.42 0.40 15
24 H 0.09 0.87 7.96 -51.93 -0.41 0.46 15
25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15
LS Contribution 236.09 15.07 3.56 3.56
Total: -1.00 -29.50 236.09 -2.54 -32.05
By element:
Atomic # 1 Polarization: -0.58 SS G_CDS: -1.60 Total: -2.17 kcal
Atomic # 6 Polarization: 15.35 SS G_CDS: -0.39 Total: 14.96 kcal
Atomic # 7 Polarization: -45.48 SS G_CDS: 0.71 Total: -44.77 kcal
Atomic # 8 Polarization: -17.97 SS G_CDS: 0.20 Total: -17.77 kcal
Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal
Total LS contribution 3.56 Total: 3.56 kcal
Total: -29.50 -2.54 -32.05 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709954271.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.631 kcal
(2) G-P(sol) polarization free energy of solvation -29.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.584 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds