Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46904 * 2 1 4 4 S 1.81405 * 109.47223 * 240.00267 * 2 1 3 5 5 C 1.50697 * 109.47175 * 120.00271 * 2 1 3 6 6 C 1.38300 * 119.93340 * 59.72644 * 5 2 1 7 7 C 1.38093 * 120.07036 * 179.72731 * 6 5 2 8 8 C 1.38882 * 119.93253 * 0.54499 * 7 6 5 9 9 O 1.35752 * 120.07126 * 179.74615 * 8 7 6 10 10 C 1.34830 * 116.99923 * 174.44519 * 9 8 7 11 11 H 1.08005 * 119.99782 * 5.05210 * 10 9 8 12 12 C 1.38646 * 120.00162 * 185.06156 * 10 9 8 13 13 N 1.31564 * 120.00175 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00280 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46948 * 59.99568 * 14 12 10 16 16 H 1.48499 * 109.47353 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46840 * 299.99525 * 14 12 10 18 18 C 1.38877 * 119.85644 * 359.73051 * 8 7 6 19 19 C 1.38094 * 119.93551 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47290 * 299.99625 * 1 2 3 22 22 H 1.09000 * 109.47149 * 60.00119 * 1 2 3 23 23 H 1.34499 * 102.99938 * 299.99899 * 4 2 1 24 24 H 1.07998 * 119.96251 * 0.02562 * 6 5 2 25 25 H 1.08004 * 120.03586 * 180.27479 * 7 6 5 26 26 H 0.96999 * 120.00444 * 180.02562 * 13 12 10 27 27 H 1.08005 * 120.03106 * 179.97438 * 18 8 7 28 28 H 1.08000 * 119.96660 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4812 5 6 2.0323 -0.7104 1.2304 6 6 1.6927 -2.0329 1.4507 7 6 2.1561 -2.6883 2.5744 8 6 2.9547 -2.0148 3.4895 9 8 3.4075 -2.6549 4.5977 10 6 4.2701 -1.9806 5.3845 11 1 4.5074 -0.9498 5.1664 12 6 4.8528 -2.6105 6.4736 13 7 4.5636 -3.8661 6.7396 14 14 6.0485 -1.6765 7.5633 15 1 5.3635 -0.4990 8.1541 16 1 6.5269 -2.5675 8.6507 17 1 7.2054 -1.2205 6.7515 18 6 3.2892 -0.6852 3.2684 19 6 2.8278 -0.0371 2.1397 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6178 -2.0898 -1.3500 24 1 1.0684 -2.5549 0.7407 25 1 1.8942 -3.7224 2.7436 26 1 4.9709 -4.3068 7.5017 27 1 3.9097 -0.1586 3.9784 28 1 3.0880 0.9968 1.9669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757162390.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -27.904655 kcal Electronic energy + Delta-G solvation = -12765.214013 eV Core-core repulsion = 10486.258841 eV Total energy + Delta-G solvation = -2278.955172 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87973 -38.68901 -34.84008 -33.97126 -31.91604 -29.52837 -27.42554 -24.64361 -23.72028 -21.95336 -19.96926 -18.92657 -18.39021 -16.85113 -16.46043 -16.10981 -15.58469 -15.40504 -14.93682 -14.50649 -14.33439 -14.02040 -13.55460 -13.38781 -13.08560 -12.69833 -12.63460 -12.20884 -12.13922 -12.02001 -11.22477 -11.20326 -10.75578 -9.86473 -9.13260 -8.79175 -8.48721 -6.17195 0.36868 0.52334 0.99327 1.35501 1.46213 1.51871 1.80742 2.17237 2.80377 3.13264 3.44206 3.68870 3.92868 4.08968 4.19146 4.34359 4.47346 4.65585 4.84989 4.90511 4.98124 5.10991 5.20603 5.24591 5.47226 5.65824 5.67183 5.99900 6.11527 6.95684 7.74910 8.74168 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.058507 B = 0.005877 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.459540 B = 4763.136411 C = 4922.139135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 H 0.140 0.860 4 S -0.265 6.265 5 C -0.161 4.161 6 C -0.068 4.068 7 C -0.201 4.201 8 C 0.115 3.885 9 O -0.231 6.231 10 C -0.416 4.416 11 H 0.105 0.895 12 C -0.023 4.023 13 N -0.921 5.921 14 Si 1.019 2.981 15 H -0.255 1.255 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.237 4.237 19 C -0.050 4.050 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.127 0.873 25 H 0.110 0.890 26 H 0.273 0.727 27 H 0.125 0.875 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 9.767 -11.016 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.158 0.842 4 S -0.110 6.110 5 C -0.163 4.163 6 C -0.087 4.087 7 C -0.220 4.220 8 C 0.064 3.936 9 O -0.137 6.137 10 C -0.492 4.492 11 H 0.122 0.878 12 C -0.220 4.220 13 N -0.559 5.559 14 Si 0.838 3.162 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.181 1.181 18 C -0.256 4.256 19 C -0.069 4.069 20 H 0.067 0.933 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.053 0.947 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.755 9.180 -11.615 15.549 hybrid contribution -0.186 -0.876 1.730 1.949 sum -4.941 8.304 -9.885 13.823 Atomic orbital electron populations 1.22171 0.91231 1.02590 1.04082 1.21812 0.99110 1.00785 0.88158 0.84222 1.87258 1.73920 1.15343 1.34483 1.19618 1.03916 0.94509 0.98273 1.20625 0.98131 0.94444 0.95489 1.20332 1.04923 1.00363 0.96370 1.19923 0.93834 0.92553 0.87291 1.83944 1.56229 1.42754 1.30815 1.21836 1.21943 0.97438 1.07939 0.87752 1.26624 0.99762 0.96987 0.98650 1.70182 1.43947 1.12637 1.29166 0.84638 0.77171 0.77540 0.76831 1.17935 1.19769 1.18086 1.21300 1.07854 0.94556 1.01879 1.20977 0.94270 1.00107 0.91588 0.93284 0.90627 0.89323 0.94699 0.85505 0.87158 0.91802 0.85724 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.01 71.98 0.65 -1.88 15 2 C 0.03 0.64 3.33 29.85 0.10 0.74 15 3 H 0.14 2.46 7.87 -2.39 -0.02 2.44 15 4 S -0.26 -6.31 24.92 -56.49 -1.41 -7.72 15 5 C -0.16 -4.79 4.78 -19.83 -0.09 -4.89 15 6 C -0.07 -2.28 8.69 22.25 0.19 -2.09 15 7 C -0.20 -8.59 9.99 22.39 0.22 -8.37 15 8 C 0.12 5.69 6.65 22.58 0.15 5.84 15 9 O -0.23 -13.87 9.76 -22.76 -0.22 -14.09 15 10 C -0.42 -23.99 9.49 67.92 0.64 -23.35 15 11 H 0.11 5.45 5.20 -2.91 -0.02 5.44 15 12 C -0.02 -1.28 5.49 84.83 0.47 -0.81 15 13 N -0.92 -56.51 13.67 21.61 0.30 -56.22 15 14 Si 1.02 42.32 29.55 68.60 2.03 44.35 15 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 18 C -0.24 -9.95 9.17 22.39 0.21 -9.75 15 19 C -0.05 -1.61 9.66 22.25 0.22 -1.39 15 20 H 0.05 0.93 7.37 -2.39 -0.02 0.91 15 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.09 2.17 8.29 73.35 0.61 2.78 15 24 H 0.13 3.59 6.92 -2.91 -0.02 3.57 15 25 H 0.11 4.74 8.06 -2.91 -0.02 4.71 15 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 27 H 0.13 5.27 5.64 -2.91 -0.02 5.25 15 28 H 0.15 3.68 7.94 -2.91 -0.02 3.66 15 Total: -1.00 -67.69 257.38 5.23 -62.46 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.78 Total: 17.17 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 2.75 Total: -45.95 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.30 Total: -56.22 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.22 Total: -14.09 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.41 Total: -7.72 kcal Total: -67.69 5.23 -62.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757162390.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.559 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds