Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48498 * 109.46940 * 239.99719 * 3 2 1 5 5 H 1.48506 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47356 * 119.99939 * 3 2 1 7 7 C 1.40045 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00347 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99945 * 180.02562 * 9 7 2 12 12 N 1.40100 * 119.99901 * 179.72542 * 11 9 7 13 13 C 1.34774 * 119.99909 * 179.97438 * 12 11 9 14 14 O 1.21617 * 119.99727 * 0.02562 * 13 12 11 15 15 C 1.47380 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.47022 * 127.19185 * 180.02562 * 15 13 12 17 17 C 1.34181 * 105.95033 * 179.97438 * 16 15 13 18 18 O 1.34215 * 109.12697 * 359.97438 * 17 16 15 19 19 C 1.33653 * 110.90607 * 359.74941 * 18 17 16 20 20 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 22 22 H 0.97004 * 120.00056 * 0.02562 * 12 11 9 23 23 H 1.07997 * 127.02036 * 359.95109 * 16 15 13 24 24 H 1.08004 * 125.43430 * 180.02562 * 17 16 15 25 25 H 1.08000 * 125.80247 * 180.25919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4804 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0027 12 7 1.2484 -4.8610 0.0096 13 6 1.9222 -6.0282 0.0101 14 8 3.1384 -6.0282 0.0051 15 6 1.1853 -7.3045 0.0168 16 6 1.7552 -8.6598 0.0188 17 6 0.7089 -9.4998 0.0259 18 8 -0.4279 -8.7863 0.0289 19 6 -0.1681 -7.4752 0.0294 20 1 -0.4849 0.8401 -0.0004 21 1 2.9189 -3.6477 0.0031 22 1 0.2783 -4.8609 0.0133 23 1 2.8021 -8.9249 0.0150 24 1 0.7715 -10.5780 0.0296 25 1 -0.9044 -6.6852 0.0356 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772598415.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -27.351304 kcal Electronic energy + Delta-G solvation = -14372.289645 eV Core-core repulsion = 11547.065254 eV Total energy + Delta-G solvation = -2825.224391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.53284 -39.10582 -37.09241 -34.14775 -32.89689 -32.55769 -30.70179 -29.15907 -26.24136 -23.49081 -21.48683 -20.53274 -20.23366 -18.51630 -17.05993 -16.45993 -16.15221 -15.88225 -15.21147 -14.73206 -14.45895 -13.89733 -13.47185 -12.93578 -12.69157 -12.57162 -12.38280 -11.42048 -11.12700 -10.65938 -10.42515 -10.15012 -9.81099 -9.78297 -8.97342 -8.86166 -7.98843 -7.16544 -6.39152 -4.84085 1.40185 2.07333 2.81266 2.92997 3.09882 3.15023 3.19705 3.61001 4.04479 4.40259 4.55791 4.68078 5.01072 5.37658 5.59135 5.61672 5.72055 5.88721 6.24147 6.90137 7.27922 7.30350 7.81828 7.90944 8.16317 8.78975 8.84707 9.19839 10.35445 10.53772 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.072451 B = 0.005455 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.372697 B = 5131.830659 C = 5508.347718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.559 5.559 12 N -0.505 5.505 13 C 0.570 3.430 14 O -0.557 6.557 15 C -0.220 4.220 16 C -0.163 4.163 17 C -0.046 4.046 18 O -0.176 6.176 19 C 0.018 3.982 20 H 0.273 0.727 21 H 0.414 0.586 22 H 0.421 0.579 23 H 0.159 0.841 24 H 0.208 0.792 25 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -12.648 0.078 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.313 5.313 12 N -0.247 5.247 13 C 0.356 3.644 14 O -0.437 6.437 15 C -0.225 4.225 16 C -0.183 4.183 17 C -0.112 4.112 18 O -0.071 6.071 19 C -0.053 4.053 20 H 0.083 0.917 21 H 0.254 0.746 22 H 0.262 0.738 23 H 0.177 0.823 24 H 0.224 0.776 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.407 -12.631 0.073 12.638 hybrid contribution 0.619 0.797 0.002 1.009 sum 0.212 -11.834 0.075 11.836 Atomic orbital electron populations 1.69998 1.07149 1.27957 1.34040 1.25721 0.94781 1.00463 0.92408 0.86247 0.79679 0.80096 0.79730 1.19030 1.20407 1.19027 1.20654 0.93968 0.87859 1.54435 0.90614 1.18643 0.87634 0.80754 0.76964 1.90606 1.13761 1.85862 1.56096 1.45894 1.07743 0.94256 1.83409 1.44472 1.08910 0.98694 1.72592 1.17167 0.87103 0.81484 0.78690 1.90748 1.13013 1.87091 1.52798 1.21429 0.93240 0.94340 1.13531 1.22756 1.00577 0.89875 1.05048 1.23906 0.82277 0.97742 1.07310 1.83786 1.34855 1.17428 1.71036 1.24580 0.96453 0.83661 1.00563 0.91654 0.74627 0.73830 0.82318 0.77570 0.76957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.89 11.83 55.55 0.66 -21.24 15 2 C 0.09 2.34 5.50 -17.37 -0.10 2.25 15 3 Si 0.92 19.46 29.56 -169.99 -5.02 14.43 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.53 -14.55 9.54 -35.63 -0.34 -14.89 15 8 H 0.08 1.89 7.85 -52.49 -0.41 1.48 15 9 C 0.55 15.39 7.86 -12.98 -0.10 15.29 15 10 O -0.58 -17.77 14.86 5.20 0.08 -17.69 15 11 N -0.56 -13.22 6.26 30.19 0.19 -13.03 15 12 N -0.51 -10.30 6.25 30.42 0.19 -10.11 15 13 C 0.57 10.90 7.93 -12.54 -0.10 10.80 15 14 O -0.56 -12.28 16.82 5.26 0.09 -12.19 15 15 C -0.22 -3.32 6.31 -103.28 -0.65 -3.97 15 16 C -0.16 -2.06 11.01 -37.45 -0.41 -2.47 15 17 C -0.05 -0.46 12.03 29.30 0.35 -0.11 15 18 O -0.18 -2.00 10.52 7.65 0.08 -1.92 15 19 C 0.02 0.22 11.61 30.08 0.35 0.57 15 20 H 0.27 7.08 8.29 -40.82 -0.34 6.74 15 21 H 0.41 9.34 7.98 -182.60 -1.46 7.88 15 22 H 0.42 7.95 6.97 -182.59 -1.27 6.68 15 23 H 0.16 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.21 1.11 8.06 -52.48 -0.42 0.69 15 25 H 0.21 2.02 7.47 -52.49 -0.39 1.63 15 LS Contribution 243.90 15.07 3.68 3.68 Total: -1.00 -35.01 243.90 -4.58 -39.59 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.51 Total: 11.00 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.00 Total: 7.47 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 1.04 Total: -44.38 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: 0.25 Total: -31.79 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -35.01 -4.58 -39.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772598415.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.242 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds