Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47258 * 269.99799 * 3 2 1 5 5 H 1.48506 * 109.47273 * 30.00249 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99835 * 3 2 1 7 7 C 1.37878 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99769 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47152 * 60.00043 * 9 7 2 11 11 O 1.42903 * 109.46964 * 300.00203 * 9 7 2 12 12 C 1.50701 * 109.46900 * 180.02562 * 9 7 2 13 13 C 1.32625 * 125.17782 * 265.01632 * 12 9 7 14 14 C 1.40120 * 115.63907 * 179.97438 * 13 12 9 15 15 C 1.33827 * 113.70350 * 359.95489 * 14 13 12 16 16 S 1.75584 * 125.17155 * 84.97966 * 12 9 7 17 17 C 1.52114 * 110.67546 * 180.08627 * 15 14 13 18 18 C 1.54483 * 104.86080 * 17.40804 * 17 15 14 19 19 C 1.52789 * 136.54279 * 179.97438 * 14 13 12 20 20 H 0.96999 * 120.00477 * 0.02562 * 1 2 3 21 21 H 0.96701 * 113.99982 * 300.00025 * 11 9 7 22 22 H 1.08003 * 122.18074 * 0.02562 * 13 12 9 23 23 H 1.08999 * 110.36597 * 136.25591 * 17 15 14 24 24 H 1.09005 * 110.36107 * 258.46403 * 17 15 14 25 25 H 1.08999 * 111.06863 * 215.43804 * 18 17 15 26 26 H 1.09006 * 110.99028 * 91.58218 * 18 17 15 27 27 H 1.09002 * 110.32560 * 281.33572 * 19 14 13 28 28 H 1.09002 * 110.32409 * 43.44718 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1666 12 6 2.2305 -3.6445 -0.0005 13 6 2.6555 -4.2865 -1.0805 14 6 3.5693 -5.3232 -0.8492 15 6 3.8688 -5.4979 0.4434 16 16 2.9832 -4.3316 1.4292 17 6 4.8644 -6.6351 0.6149 18 6 5.4725 -6.8447 -0.7896 19 6 4.3368 -6.3351 -1.6985 20 1 -0.4851 0.8400 -0.0004 21 1 0.9224 -2.5299 1.9976 22 1 2.3198 -4.0265 -2.0735 23 1 5.6412 -6.3551 1.3266 24 1 4.3541 -7.5390 0.9477 25 1 5.6773 -7.8992 -0.9746 26 1 6.3738 -6.2453 -0.9183 27 1 3.6844 -7.1592 -1.9873 28 1 4.7488 -5.8511 -2.5840 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535666976.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = -22.835080 kcal Electronic energy + Delta-G solvation = -12917.460199 eV Core-core repulsion = 10638.724861 eV Total energy + Delta-G solvation = -2278.735339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.89367 -36.13209 -33.66606 -32.23041 -28.59447 -28.02724 -25.86431 -22.93954 -21.44846 -20.11914 -17.83592 -16.99270 -16.62218 -15.47230 -14.69374 -14.55994 -13.90461 -13.15045 -13.11951 -12.68193 -12.28724 -11.83604 -11.61775 -11.26733 -11.18216 -11.03576 -10.99940 -10.94539 -10.54440 -10.15966 -10.12239 -9.38727 -8.71653 -8.50266 -7.70765 -7.58272 -6.08971 -4.28805 1.73677 2.15564 2.76920 3.25148 3.30751 3.33240 3.39129 4.34679 4.77242 4.81166 5.06882 5.17224 5.37786 5.70121 5.77094 5.85749 5.92162 5.98566 6.16147 6.21853 6.24569 6.33228 6.81044 7.01698 7.11677 7.53475 7.75642 8.01089 8.72568 9.18423 9.46368 10.94284 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.007625 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.019581 B = 3671.417528 C = 3834.557066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.287 3.713 10 H 0.079 0.921 11 O -0.556 6.556 12 C -0.133 4.133 13 C -0.159 4.159 14 C -0.113 4.113 15 C -0.243 4.243 16 S 0.104 5.896 17 C -0.036 4.036 18 C -0.118 4.118 19 C -0.057 4.057 20 H 0.263 0.737 21 H 0.345 0.655 22 H 0.130 0.870 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -10.851 -0.204 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.603 4.603 8 H 0.078 0.922 9 C 0.227 3.773 10 H 0.096 0.904 11 O -0.358 6.358 12 C -0.250 4.250 13 C -0.187 4.187 14 C -0.126 4.126 15 C -0.360 4.360 16 S 0.370 5.630 17 C -0.076 4.076 18 C -0.156 4.156 19 C -0.097 4.097 20 H 0.073 0.927 21 H 0.189 0.811 22 H 0.148 0.852 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.581 -10.458 0.911 12.949 hybrid contribution 0.985 0.794 -1.210 1.751 sum 8.566 -9.664 -0.299 12.917 Atomic orbital electron populations 1.70065 1.05963 1.26840 1.46489 1.25044 0.94774 0.99242 0.93576 0.86562 0.79973 0.82935 0.78337 1.20374 1.20965 1.19643 1.21529 0.93354 0.90200 1.55216 0.92171 1.18179 0.85721 0.86370 0.86980 0.90387 1.86628 1.37920 1.96118 1.15154 1.26108 1.02939 1.01772 0.94199 1.19380 1.01771 0.97846 0.99696 1.20442 0.99545 0.97958 0.94645 1.25603 1.07969 1.04749 0.97669 1.83738 1.40690 1.28081 1.10487 1.20701 0.95106 0.94202 0.97565 1.22324 0.97954 1.00976 0.94386 1.20946 0.95453 0.95998 0.97257 0.92695 0.81058 0.85193 0.91487 0.90923 0.90681 0.91002 0.90853 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 12.84 55.43 0.71 -24.35 15 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 15 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.56 -15.60 8.75 -34.44 -0.30 -15.90 15 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 9 C 0.29 7.45 3.26 -29.03 -0.09 7.36 15 10 H 0.08 2.17 8.13 -51.93 -0.42 1.75 15 11 O -0.56 -14.59 12.63 -35.23 -0.44 -15.04 15 12 C -0.13 -2.97 5.42 -36.21 -0.20 -3.16 15 13 C -0.16 -3.26 10.03 -40.77 -0.41 -3.67 15 14 C -0.11 -2.00 6.54 -104.42 -0.68 -2.69 15 15 C -0.24 -4.22 7.35 -35.16 -0.26 -4.48 15 16 S 0.10 2.01 22.52 -107.50 -2.42 -0.41 15 17 C -0.04 -0.47 6.81 -26.40 -0.18 -0.65 15 18 C -0.12 -1.32 7.14 -25.36 -0.18 -1.50 15 19 C -0.06 -0.76 6.80 -26.25 -0.18 -0.94 15 20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.35 8.19 8.38 45.56 0.38 8.57 15 22 H 0.13 2.55 8.06 -52.48 -0.42 2.13 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -30.23 255.81 -8.44 -38.67 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -2.54 Total: 4.64 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.58 Total: -23.50 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.71 Total: -24.35 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.04 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.42 Total: -0.41 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.23 -8.44 -38.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535666976.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.839 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds