Wall clock time and date at job start Mon Mar 30 2020 02:58:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86802 * 119.99729 * 2 1
4 4 H 1.48496 * 109.47258 * 269.99799 * 3 2 1
5 5 H 1.48506 * 109.47273 * 30.00249 * 3 2 1
6 6 H 1.48502 * 109.47074 * 149.99835 * 3 2 1
7 7 C 1.37878 * 120.00441 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99769 * 359.97438 * 7 2 1
10 10 H 1.08996 * 109.47152 * 60.00043 * 9 7 2
11 11 O 1.42903 * 109.46964 * 300.00203 * 9 7 2
12 12 C 1.50701 * 109.46900 * 180.02562 * 9 7 2
13 13 C 1.32625 * 125.17782 * 265.01632 * 12 9 7
14 14 C 1.40120 * 115.63907 * 179.97438 * 13 12 9
15 15 C 1.33827 * 113.70350 * 359.95489 * 14 13 12
16 16 S 1.75584 * 125.17155 * 84.97966 * 12 9 7
17 17 C 1.52114 * 110.67546 * 180.08627 * 15 14 13
18 18 C 1.54483 * 104.86080 * 17.40804 * 17 15 14
19 19 C 1.52789 * 136.54279 * 179.97438 * 14 13 12
20 20 H 0.96999 * 120.00477 * 0.02562 * 1 2 3
21 21 H 0.96701 * 113.99982 * 300.00025 * 11 9 7
22 22 H 1.08003 * 122.18074 * 0.02562 * 13 12 9
23 23 H 1.08999 * 110.36597 * 136.25591 * 17 15 14
24 24 H 1.09005 * 110.36107 * 258.46403 * 17 15 14
25 25 H 1.08999 * 111.06863 * 215.43804 * 18 17 15
26 26 H 1.09006 * 110.99028 * 91.58218 * 18 17 15
27 27 H 1.09002 * 110.32560 * 281.33572 * 19 14 13
28 28 H 1.09002 * 110.32409 * 43.44718 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4464 2.6527 0.7001
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 1 0.6241 -2.5567 -0.8903
11 8 0.4300 -2.5751 1.1666
12 6 2.2305 -3.6445 -0.0005
13 6 2.6555 -4.2865 -1.0805
14 6 3.5693 -5.3232 -0.8492
15 6 3.8688 -5.4979 0.4434
16 16 2.9832 -4.3316 1.4292
17 6 4.8644 -6.6351 0.6149
18 6 5.4725 -6.8447 -0.7896
19 6 4.3368 -6.3351 -1.6985
20 1 -0.4851 0.8400 -0.0004
21 1 0.9224 -2.5299 1.9976
22 1 2.3198 -4.0265 -2.0735
23 1 5.6412 -6.3551 1.3266
24 1 4.3541 -7.5390 0.9477
25 1 5.6773 -7.8992 -0.9746
26 1 6.3738 -6.2453 -0.9183
27 1 3.6844 -7.1592 -1.9873
28 1 4.7488 -5.8511 -2.5840
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001535666976.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:27
Heat of formation + Delta-G solvation = -22.835080 kcal
Electronic energy + Delta-G solvation = -12917.460199 eV
Core-core repulsion = 10638.724861 eV
Total energy + Delta-G solvation = -2278.735339 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.89367 -36.13209 -33.66606 -32.23041 -28.59447 -28.02724 -25.86431 -22.93954
-21.44846 -20.11914 -17.83592 -16.99270 -16.62218 -15.47230 -14.69374 -14.55994
-13.90461 -13.15045 -13.11951 -12.68193 -12.28724 -11.83604 -11.61775 -11.26733
-11.18216 -11.03576 -10.99940 -10.94539 -10.54440 -10.15966 -10.12239 -9.38727
-8.71653 -8.50266 -7.70765 -7.58272 -6.08971 -4.28805 1.73677 2.15564
2.76920 3.25148 3.30751 3.33240 3.39129 4.34679 4.77242 4.81166
5.06882 5.17224 5.37786 5.70121 5.77094 5.85749 5.92162 5.98566
6.16147 6.21853 6.24569 6.33228 6.81044 7.01698 7.11677 7.53475
7.75642 8.01089 8.72568 9.18423 9.46368 10.94284
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.043534 B = 0.007625 C = 0.007300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.019581 B = 3671.417528 C = 3834.557066
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.858 5.858
2 C 0.080 3.920
3 Si 0.895 3.105
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.565 4.565
8 H 0.060 0.940
9 C 0.287 3.713
10 H 0.079 0.921
11 O -0.556 6.556
12 C -0.133 4.133
13 C -0.159 4.159
14 C -0.113 4.113
15 C -0.243 4.243
16 S 0.104 5.896
17 C -0.036 4.036
18 C -0.118 4.118
19 C -0.057 4.057
20 H 0.263 0.737
21 H 0.345 0.655
22 H 0.130 0.870
23 H 0.066 0.934
24 H 0.072 0.928
25 H 0.075 0.925
26 H 0.071 0.929
27 H 0.073 0.927
28 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.352 -10.851 -0.204 13.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.494 5.494
2 C -0.126 4.126
3 Si 0.722 3.278
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.196 1.196
7 C -0.603 4.603
8 H 0.078 0.922
9 C 0.227 3.773
10 H 0.096 0.904
11 O -0.358 6.358
12 C -0.250 4.250
13 C -0.187 4.187
14 C -0.126 4.126
15 C -0.360 4.360
16 S 0.370 5.630
17 C -0.076 4.076
18 C -0.156 4.156
19 C -0.097 4.097
20 H 0.073 0.927
21 H 0.189 0.811
22 H 0.148 0.852
23 H 0.085 0.915
24 H 0.091 0.909
25 H 0.093 0.907
26 H 0.090 0.910
27 H 0.091 0.909
28 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 7.581 -10.458 0.911 12.949
hybrid contribution 0.985 0.794 -1.210 1.751
sum 8.566 -9.664 -0.299 12.917
Atomic orbital electron populations
1.70065 1.05963 1.26840 1.46489 1.25044 0.94774 0.99242 0.93576
0.86562 0.79973 0.82935 0.78337 1.20374 1.20965 1.19643 1.21529
0.93354 0.90200 1.55216 0.92171 1.18179 0.85721 0.86370 0.86980
0.90387 1.86628 1.37920 1.96118 1.15154 1.26108 1.02939 1.01772
0.94199 1.19380 1.01771 0.97846 0.99696 1.20442 0.99545 0.97958
0.94645 1.25603 1.07969 1.04749 0.97669 1.83738 1.40690 1.28081
1.10487 1.20701 0.95106 0.94202 0.97565 1.22324 0.97954 1.00976
0.94386 1.20946 0.95453 0.95998 0.97257 0.92695 0.81058 0.85193
0.91487 0.90923 0.90681 0.91002 0.90853 0.91246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.06 12.84 55.43 0.71 -24.35 15
2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 15
3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15
4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15
5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15
6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15
7 C -0.56 -15.60 8.75 -34.44 -0.30 -15.90 15
8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15
9 C 0.29 7.45 3.26 -29.03 -0.09 7.36 15
10 H 0.08 2.17 8.13 -51.93 -0.42 1.75 15
11 O -0.56 -14.59 12.63 -35.23 -0.44 -15.04 15
12 C -0.13 -2.97 5.42 -36.21 -0.20 -3.16 15
13 C -0.16 -3.26 10.03 -40.77 -0.41 -3.67 15
14 C -0.11 -2.00 6.54 -104.42 -0.68 -2.69 15
15 C -0.24 -4.22 7.35 -35.16 -0.26 -4.48 15
16 S 0.10 2.01 22.52 -107.50 -2.42 -0.41 15
17 C -0.04 -0.47 6.81 -26.40 -0.18 -0.65 15
18 C -0.12 -1.32 7.14 -25.36 -0.18 -1.50 15
19 C -0.06 -0.76 6.80 -26.25 -0.18 -0.94 15
20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15
21 H 0.35 8.19 8.38 45.56 0.38 8.57 15
22 H 0.13 2.55 8.06 -52.48 -0.42 2.13 15
23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15
24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15
25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15
26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15
27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15
28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15
LS Contribution 255.81 15.07 3.86 3.86
Total: -1.00 -30.23 255.81 -8.44 -38.67
By element:
Atomic # 1 Polarization: 7.18 SS G_CDS: -2.54 Total: 4.64 kcal
Atomic # 6 Polarization: -20.92 SS G_CDS: -2.58 Total: -23.50 kcal
Atomic # 7 Polarization: -25.06 SS G_CDS: 0.71 Total: -24.35 kcal
Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.04 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Atomic # 16 Polarization: 2.01 SS G_CDS: -2.42 Total: -0.41 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -30.23 -8.44 -38.67 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535666976.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.839 kcal
(2) G-P(sol) polarization free energy of solvation -30.234 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds