Wall clock time and date at job start Mon Mar 30 2020 02:58:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86802 * 119.99729 * 2 1
4 4 H 1.48496 * 109.47258 * 269.99799 * 3 2 1
5 5 H 1.48506 * 109.47273 * 30.00249 * 3 2 1
6 6 H 1.48502 * 109.47074 * 149.99835 * 3 2 1
7 7 C 1.37878 * 120.00441 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99769 * 359.97438 * 7 2 1
10 10 H 1.08996 * 109.47152 * 60.00043 * 9 7 2
11 11 O 1.42903 * 109.46964 * 300.00203 * 9 7 2
12 12 C 1.50701 * 109.46900 * 180.02562 * 9 7 2
13 13 C 1.32625 * 125.17782 * 265.01632 * 12 9 7
14 14 C 1.40120 * 115.63907 * 179.97438 * 13 12 9
15 15 C 1.33827 * 113.70350 * 359.95489 * 14 13 12
16 16 S 1.75584 * 125.17155 * 84.97966 * 12 9 7
17 17 C 1.52114 * 110.67546 * 180.08627 * 15 14 13
18 18 C 1.54483 * 104.86080 * 17.40804 * 17 15 14
19 19 C 1.52789 * 136.54279 * 179.97438 * 14 13 12
20 20 H 0.96999 * 120.00477 * 0.02562 * 1 2 3
21 21 H 0.96701 * 113.99982 * 300.00025 * 11 9 7
22 22 H 1.08003 * 122.18074 * 0.02562 * 13 12 9
23 23 H 1.08999 * 110.36597 * 136.25591 * 17 15 14
24 24 H 1.09005 * 110.36107 * 258.46403 * 17 15 14
25 25 H 1.08999 * 111.06863 * 215.43804 * 18 17 15
26 26 H 1.09006 * 110.99028 * 91.58218 * 18 17 15
27 27 H 1.09002 * 110.32560 * 281.33572 * 19 14 13
28 28 H 1.09002 * 110.32409 * 43.44718 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4464 2.6527 0.7001
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 1 0.6241 -2.5567 -0.8903
11 8 0.4300 -2.5751 1.1666
12 6 2.2305 -3.6445 -0.0005
13 6 2.6555 -4.2865 -1.0805
14 6 3.5693 -5.3232 -0.8492
15 6 3.8688 -5.4979 0.4434
16 16 2.9832 -4.3316 1.4292
17 6 4.8644 -6.6351 0.6149
18 6 5.4725 -6.8447 -0.7896
19 6 4.3368 -6.3351 -1.6985
20 1 -0.4851 0.8400 -0.0004
21 1 0.9224 -2.5299 1.9976
22 1 2.3198 -4.0265 -2.0735
23 1 5.6412 -6.3551 1.3266
24 1 4.3541 -7.5390 0.9477
25 1 5.6773 -7.8992 -0.9746
26 1 6.3738 -6.2453 -0.9183
27 1 3.6844 -7.1592 -1.9873
28 1 4.7488 -5.8511 -2.5840
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001535666976.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:27
Heat of formation + Delta-G solvation = -42.444292 kcal
Electronic energy + Delta-G solvation = -12918.310519 eV
Core-core repulsion = 10638.724861 eV
Total energy + Delta-G solvation = -2279.585658 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.19548 -38.03982 -35.14484 -34.38125 -30.29235 -29.13689 -27.61848 -24.75524
-22.82947 -21.44728 -19.42408 -18.98369 -18.11237 -16.76064 -16.61150 -16.25972
-15.43737 -15.01458 -14.81493 -13.82824 -13.66242 -13.53523 -13.08074 -12.94383
-12.80935 -12.71543 -12.48890 -12.14820 -11.97596 -11.72784 -11.58417 -11.31589
-10.81183 -10.54356 -9.28675 -9.06053 -8.20627 -6.49704 0.22559 0.66798
1.23713 1.37964 1.38551 1.50196 1.83435 2.35675 3.03271 3.61252
3.73229 4.08367 4.22171 4.22904 4.51627 4.60795 4.75001 4.87525
4.96281 5.03609 5.07507 5.20241 5.38370 5.47848 5.57006 5.57812
5.70840 5.92453 6.58090 7.14918 7.32963 8.82279
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.043534 B = 0.007625 C = 0.007300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.019581 B = 3671.417528 C = 3834.557066
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.030 3.970
3 Si 0.965 3.035
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.266 1.266
7 C -0.577 4.577
8 H 0.054 0.946
9 C 0.291 3.709
10 H 0.043 0.957
11 O -0.570 6.570
12 C -0.179 4.179
13 C -0.156 4.156
14 C -0.135 4.135
15 C -0.232 4.232
16 S 0.104 5.896
17 C -0.038 4.038
18 C -0.107 4.107
19 C -0.056 4.056
20 H 0.266 0.734
21 H 0.354 0.646
22 H 0.126 0.874
23 H 0.081 0.919
24 H 0.092 0.908
25 H 0.110 0.890
26 H 0.077 0.923
27 H 0.089 0.911
28 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.761 -12.229 -0.234 16.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.173 4.173
3 Si 0.789 3.211
4 H -0.196 1.196
5 H -0.203 1.203
6 H -0.190 1.190
7 C -0.615 4.615
8 H 0.073 0.927
9 C 0.232 3.768
10 H 0.060 0.940
11 O -0.374 6.374
12 C -0.297 4.297
13 C -0.185 4.185
14 C -0.148 4.148
15 C -0.349 4.349
16 S 0.370 5.630
17 C -0.078 4.078
18 C -0.145 4.145
19 C -0.095 4.095
20 H 0.075 0.925
21 H 0.199 0.801
22 H 0.144 0.856
23 H 0.100 0.900
24 H 0.111 0.889
25 H 0.128 0.872
26 H 0.096 0.904
27 H 0.107 0.893
28 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 9.998 -11.842 0.884 15.523
hybrid contribution 0.240 1.117 -1.205 1.660
sum 10.238 -10.725 -0.321 14.830
Atomic orbital electron populations
1.70187 1.07607 1.27904 1.47574 1.25911 0.95585 1.02896 0.92937
0.85470 0.78658 0.78318 0.78656 1.19563 1.20280 1.19036 1.21762
0.93141 0.91472 1.55135 0.92747 1.17793 0.85715 0.87781 0.85551
0.93956 1.86554 1.38746 1.96306 1.15791 1.25605 1.04705 1.02700
0.96651 1.19653 1.01612 0.98150 0.99078 1.20861 0.99490 0.98182
0.96219 1.26316 1.07280 1.04451 0.96851 1.83555 1.41025 1.28895
1.09493 1.20969 0.94454 0.92890 0.99451 1.22379 0.96945 1.03219
0.91976 1.21105 0.95925 0.95130 0.97334 0.92484 0.80080 0.85599
0.90024 0.88948 0.87154 0.90391 0.89305 0.90438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -53.79 12.84 21.45 0.28 -53.51 15
2 C 0.03 1.69 5.40 84.66 0.46 2.15 15
3 Si 0.97 43.86 29.54 68.60 2.03 45.89 15
4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15
5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15
6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15
7 C -0.58 -32.87 8.75 25.60 0.22 -32.65 15
8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15
9 C 0.29 15.85 3.26 29.10 0.09 15.94 15
10 H 0.04 2.55 8.13 -2.39 -0.02 2.53 15
11 O -0.57 -31.29 12.63 -148.98 -1.88 -33.17 15
12 C -0.18 -8.28 5.42 24.52 0.13 -8.15 15
13 C -0.16 -6.50 10.03 21.56 0.22 -6.28 15
14 C -0.14 -4.60 6.54 -19.73 -0.13 -4.73 15
15 C -0.23 -7.55 7.35 25.14 0.18 -7.37 15
16 S 0.10 4.01 22.52 -56.49 -1.27 2.74 15
17 C -0.04 -0.83 6.81 30.81 0.21 -0.62 15
18 C -0.11 -1.86 7.14 31.48 0.22 -1.63 15
19 C -0.06 -1.29 6.80 30.91 0.21 -1.08 15
20 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15
21 H 0.35 17.51 8.38 -74.06 -0.62 16.89 15
22 H 0.13 5.15 8.06 -2.91 -0.02 5.12 15
23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15
24 H 0.09 1.72 8.14 -2.38 -0.02 1.70 15
25 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15
26 H 0.08 1.30 8.14 -2.38 -0.02 1.28 15
27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15
28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15
Total: -1.00 -66.74 255.81 1.52 -65.22
By element:
Atomic # 1 Polarization: 16.70 SS G_CDS: 0.55 Total: 17.25 kcal
Atomic # 6 Polarization: -46.23 SS G_CDS: 1.83 Total: -44.41 kcal
Atomic # 7 Polarization: -53.79 SS G_CDS: 0.28 Total: -53.51 kcal
Atomic # 8 Polarization: -31.29 SS G_CDS: -1.88 Total: -33.17 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Atomic # 16 Polarization: 4.01 SS G_CDS: -1.27 Total: 2.74 kcal
Total: -66.74 1.52 -65.22 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535666976.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.776 kcal
(2) G-P(sol) polarization free energy of solvation -66.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds