Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47258 * 269.99799 * 3 2 1 5 5 H 1.48506 * 109.47273 * 30.00249 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99835 * 3 2 1 7 7 C 1.37878 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99769 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47152 * 60.00043 * 9 7 2 11 11 O 1.42903 * 109.46964 * 300.00203 * 9 7 2 12 12 C 1.50701 * 109.46900 * 180.02562 * 9 7 2 13 13 C 1.32625 * 125.17782 * 265.01632 * 12 9 7 14 14 C 1.40120 * 115.63907 * 179.97438 * 13 12 9 15 15 C 1.33827 * 113.70350 * 359.95489 * 14 13 12 16 16 S 1.75584 * 125.17155 * 84.97966 * 12 9 7 17 17 C 1.52114 * 110.67546 * 180.08627 * 15 14 13 18 18 C 1.54483 * 104.86080 * 17.40804 * 17 15 14 19 19 C 1.52789 * 136.54279 * 179.97438 * 14 13 12 20 20 H 0.96999 * 120.00477 * 0.02562 * 1 2 3 21 21 H 0.96701 * 113.99982 * 300.00025 * 11 9 7 22 22 H 1.08003 * 122.18074 * 0.02562 * 13 12 9 23 23 H 1.08999 * 110.36597 * 136.25591 * 17 15 14 24 24 H 1.09005 * 110.36107 * 258.46403 * 17 15 14 25 25 H 1.08999 * 111.06863 * 215.43804 * 18 17 15 26 26 H 1.09006 * 110.99028 * 91.58218 * 18 17 15 27 27 H 1.09002 * 110.32560 * 281.33572 * 19 14 13 28 28 H 1.09002 * 110.32409 * 43.44718 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1666 12 6 2.2305 -3.6445 -0.0005 13 6 2.6555 -4.2865 -1.0805 14 6 3.5693 -5.3232 -0.8492 15 6 3.8688 -5.4979 0.4434 16 16 2.9832 -4.3316 1.4292 17 6 4.8644 -6.6351 0.6149 18 6 5.4725 -6.8447 -0.7896 19 6 4.3368 -6.3351 -1.6985 20 1 -0.4851 0.8400 -0.0004 21 1 0.9224 -2.5299 1.9976 22 1 2.3198 -4.0265 -2.0735 23 1 5.6412 -6.3551 1.3266 24 1 4.3541 -7.5390 0.9477 25 1 5.6773 -7.8992 -0.9746 26 1 6.3738 -6.2453 -0.9183 27 1 3.6844 -7.1592 -1.9873 28 1 4.7488 -5.8511 -2.5840 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535666976.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = -42.444292 kcal Electronic energy + Delta-G solvation = -12918.310519 eV Core-core repulsion = 10638.724861 eV Total energy + Delta-G solvation = -2279.585658 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19548 -38.03982 -35.14484 -34.38125 -30.29235 -29.13689 -27.61848 -24.75524 -22.82947 -21.44728 -19.42408 -18.98369 -18.11237 -16.76064 -16.61150 -16.25972 -15.43737 -15.01458 -14.81493 -13.82824 -13.66242 -13.53523 -13.08074 -12.94383 -12.80935 -12.71543 -12.48890 -12.14820 -11.97596 -11.72784 -11.58417 -11.31589 -10.81183 -10.54356 -9.28675 -9.06053 -8.20627 -6.49704 0.22559 0.66798 1.23713 1.37964 1.38551 1.50196 1.83435 2.35675 3.03271 3.61252 3.73229 4.08367 4.22171 4.22904 4.51627 4.60795 4.75001 4.87525 4.96281 5.03609 5.07507 5.20241 5.38370 5.47848 5.57006 5.57812 5.70840 5.92453 6.58090 7.14918 7.32963 8.82279 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.007625 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.019581 B = 3671.417528 C = 3834.557066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.030 3.970 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.577 4.577 8 H 0.054 0.946 9 C 0.291 3.709 10 H 0.043 0.957 11 O -0.570 6.570 12 C -0.179 4.179 13 C -0.156 4.156 14 C -0.135 4.135 15 C -0.232 4.232 16 S 0.104 5.896 17 C -0.038 4.038 18 C -0.107 4.107 19 C -0.056 4.056 20 H 0.266 0.734 21 H 0.354 0.646 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.761 -12.229 -0.234 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.615 4.615 8 H 0.073 0.927 9 C 0.232 3.768 10 H 0.060 0.940 11 O -0.374 6.374 12 C -0.297 4.297 13 C -0.185 4.185 14 C -0.148 4.148 15 C -0.349 4.349 16 S 0.370 5.630 17 C -0.078 4.078 18 C -0.145 4.145 19 C -0.095 4.095 20 H 0.075 0.925 21 H 0.199 0.801 22 H 0.144 0.856 23 H 0.100 0.900 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.998 -11.842 0.884 15.523 hybrid contribution 0.240 1.117 -1.205 1.660 sum 10.238 -10.725 -0.321 14.830 Atomic orbital electron populations 1.70187 1.07607 1.27904 1.47574 1.25911 0.95585 1.02896 0.92937 0.85470 0.78658 0.78318 0.78656 1.19563 1.20280 1.19036 1.21762 0.93141 0.91472 1.55135 0.92747 1.17793 0.85715 0.87781 0.85551 0.93956 1.86554 1.38746 1.96306 1.15791 1.25605 1.04705 1.02700 0.96651 1.19653 1.01612 0.98150 0.99078 1.20861 0.99490 0.98182 0.96219 1.26316 1.07280 1.04451 0.96851 1.83555 1.41025 1.28895 1.09493 1.20969 0.94454 0.92890 0.99451 1.22379 0.96945 1.03219 0.91976 1.21105 0.95925 0.95130 0.97334 0.92484 0.80080 0.85599 0.90024 0.88948 0.87154 0.90391 0.89305 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.79 12.84 21.45 0.28 -53.51 15 2 C 0.03 1.69 5.40 84.66 0.46 2.15 15 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 7 C -0.58 -32.87 8.75 25.60 0.22 -32.65 15 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15 9 C 0.29 15.85 3.26 29.10 0.09 15.94 15 10 H 0.04 2.55 8.13 -2.39 -0.02 2.53 15 11 O -0.57 -31.29 12.63 -148.98 -1.88 -33.17 15 12 C -0.18 -8.28 5.42 24.52 0.13 -8.15 15 13 C -0.16 -6.50 10.03 21.56 0.22 -6.28 15 14 C -0.14 -4.60 6.54 -19.73 -0.13 -4.73 15 15 C -0.23 -7.55 7.35 25.14 0.18 -7.37 15 16 S 0.10 4.01 22.52 -56.49 -1.27 2.74 15 17 C -0.04 -0.83 6.81 30.81 0.21 -0.62 15 18 C -0.11 -1.86 7.14 31.48 0.22 -1.63 15 19 C -0.06 -1.29 6.80 30.91 0.21 -1.08 15 20 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 21 H 0.35 17.51 8.38 -74.06 -0.62 16.89 15 22 H 0.13 5.15 8.06 -2.91 -0.02 5.12 15 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.09 1.72 8.14 -2.38 -0.02 1.70 15 25 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15 26 H 0.08 1.30 8.14 -2.38 -0.02 1.28 15 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 Total: -1.00 -66.74 255.81 1.52 -65.22 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.55 Total: 17.25 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 1.83 Total: -44.41 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.28 Total: -53.51 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.88 Total: -33.17 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.27 Total: 2.74 kcal Total: -66.74 1.52 -65.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535666976.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.776 kcal (2) G-P(sol) polarization free energy of solvation -66.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds