Wall clock time and date at job start Mon Mar 30 2020 03:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76198 * 103.00257 * 2 1 4 4 C 1.38998 * 120.07749 * 0.02562 * 3 2 1 5 5 C 1.38065 * 119.91876 * 180.02562 * 4 3 2 6 6 C 1.38320 * 120.07976 * 0.02562 * 5 4 3 7 7 C 1.38281 * 120.16288 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.96257 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47532 * 205.00044 * 8 7 6 10 10 O 1.42900 * 109.47307 * 325.00762 * 8 7 6 11 11 C 1.50703 * 109.46789 * 85.00217 * 8 7 6 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38098 * 120.08028 * 0.25468 * 7 6 5 20 20 H 1.09003 * 109.47342 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47517 * 300.00275 * 1 2 3 22 22 H 1.09006 * 109.46977 * 60.00109 * 1 2 3 23 23 H 1.07995 * 120.04317 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95649 * 180.02562 * 5 4 3 25 25 H 1.08002 * 119.92164 * 179.97438 * 6 5 4 26 26 H 0.96700 * 114.00022 * 59.99222 * 10 8 7 27 27 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 28 28 H 1.08002 * 120.04463 * 179.74812 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0106 0.0000 6 6 2.8328 4.4131 -0.0016 7 6 3.8455 3.4715 -0.0021 8 6 5.2857 3.9151 -0.0045 9 1 5.9066 3.1316 -0.4389 10 8 5.4151 5.1094 -0.7783 11 6 5.7312 4.1824 1.4102 12 1 5.0406 4.0445 2.2290 13 6 7.0204 4.6032 1.6591 14 7 7.8615 4.7706 0.6621 15 14 7.5727 4.9339 3.4126 16 1 7.3078 6.3543 3.7555 17 1 9.0269 4.6584 3.5339 18 1 6.8227 4.0520 4.3426 19 6 3.5386 2.1250 -0.0064 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.1617 2.3527 0.0014 24 1 0.7211 4.7487 0.0008 25 1 3.0758 5.4654 -0.0024 26 1 4.8887 5.8506 -0.4487 27 1 7.5747 4.5985 -0.2484 28 1 4.3300 1.3901 -0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535702704.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:45 Heat of formation + Delta-G solvation = -39.052749 kcal Electronic energy + Delta-G solvation = -12878.143830 eV Core-core repulsion = 10598.705241 eV Total energy + Delta-G solvation = -2279.438590 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86643 -35.84558 -32.22382 -31.12463 -30.53670 -28.94597 -26.18668 -23.19308 -22.30069 -20.77123 -17.39568 -17.29528 -16.01824 -15.19765 -14.91209 -14.21599 -13.84607 -13.80263 -13.43123 -13.09120 -12.73386 -12.67264 -12.35352 -11.90559 -11.27216 -11.06933 -10.79492 -10.24328 -10.15328 -10.04463 -9.61614 -9.30616 -8.66040 -8.45477 -7.94395 -7.18376 -6.40758 -4.26086 1.65368 1.66434 1.84231 2.54672 3.40123 3.43740 3.59941 4.16951 4.49535 4.97557 4.98259 5.16481 5.25629 5.29300 5.53505 5.63266 5.80131 5.91357 6.03861 6.15801 6.44045 6.63454 6.82520 6.89694 7.35337 7.50206 7.87768 8.30416 8.79097 8.96829 9.58648 10.98142 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.007185 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.798554 B = 3896.324910 C = 4149.090647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.133 6.133 3 C -0.084 4.084 4 C -0.156 4.156 5 C -0.104 4.104 6 C -0.118 4.118 7 C -0.044 4.044 8 C 0.241 3.759 9 H 0.063 0.937 10 O -0.576 6.576 11 C -0.641 4.641 12 H 0.052 0.948 13 C 0.036 3.964 14 N -0.890 5.890 15 Si 1.071 2.929 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.288 1.288 19 C -0.098 4.098 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.354 0.646 27 H 0.285 0.715 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -5.090 -0.794 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.108 5.892 3 C -0.196 4.196 4 C -0.180 4.180 5 C -0.124 4.124 6 C -0.138 4.138 7 C -0.046 4.046 8 C 0.184 3.816 9 H 0.080 0.920 10 O -0.382 6.382 11 C -0.678 4.678 12 H 0.071 0.929 13 C -0.173 4.173 14 N -0.524 5.524 15 Si 0.899 3.101 16 H -0.213 1.213 17 H -0.208 1.208 18 H -0.214 1.214 19 C -0.121 4.121 20 H 0.122 0.878 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.201 0.799 27 H 0.096 0.904 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.355 -6.069 -0.255 12.878 hybrid contribution -2.655 0.901 -0.462 2.842 sum -14.010 -5.168 -0.718 14.951 Atomic orbital electron populations 1.23594 0.95507 1.06492 1.05401 1.85385 1.05626 1.04803 1.93426 1.21550 0.96783 0.95319 1.05969 1.20905 0.97336 0.93316 1.06410 1.20917 0.96409 0.94944 1.00143 1.20945 0.92057 0.99770 1.01032 1.21125 0.99023 0.92340 0.92152 1.18703 0.85878 0.84685 0.92324 0.91988 1.86532 1.71755 1.22637 1.57229 1.22347 1.00385 1.53426 0.91684 0.92923 1.25847 0.92743 0.93012 1.05709 1.70617 1.37878 1.42151 1.01753 0.83539 0.76119 0.76549 0.73934 1.21315 1.20833 1.21403 1.20594 0.93668 0.96085 1.01731 0.87842 0.89998 0.90047 0.86741 0.86419 0.86120 0.79936 0.90358 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.15 101.05 0.92 -0.49 15 2 S -0.13 -1.95 22.56 -107.50 -2.43 -4.38 15 3 C -0.08 -1.48 6.11 -39.03 -0.24 -1.72 15 4 C -0.16 -2.48 9.36 -39.36 -0.37 -2.85 15 5 C -0.10 -1.70 10.04 -39.61 -0.40 -2.09 15 6 C -0.12 -2.25 9.33 -39.54 -0.37 -2.62 15 7 C -0.04 -0.96 4.94 -104.66 -0.52 -1.48 15 8 C 0.24 6.11 2.67 -29.03 -0.08 6.04 15 9 H 0.06 1.68 7.91 -51.93 -0.41 1.27 15 10 O -0.58 -14.39 11.81 -35.23 -0.42 -14.81 15 11 C -0.64 -17.75 8.75 -34.44 -0.30 -18.05 15 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 15 13 C 0.04 1.02 5.40 -17.82 -0.10 0.92 15 14 N -0.89 -26.81 13.53 55.43 0.75 -26.06 15 15 Si 1.07 24.93 29.90 -169.99 -5.08 19.85 15 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 19 C -0.10 -1.99 9.42 -39.37 -0.37 -2.36 15 20 H 0.10 0.82 8.14 -51.92 -0.42 0.39 15 21 H 0.08 0.78 7.75 -51.93 -0.40 0.38 15 22 H 0.08 0.76 7.75 -51.92 -0.40 0.35 15 23 H 0.11 1.47 5.88 -52.49 -0.31 1.16 15 24 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.12 2.14 6.61 -52.49 -0.35 1.79 15 26 H 0.35 7.81 7.38 45.56 0.34 8.15 15 27 H 0.28 8.71 6.47 -40.82 -0.26 8.44 15 28 H 0.12 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 256.04 15.07 3.86 3.86 Total: -1.00 -30.88 256.04 -7.40 -38.28 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -2.27 Total: 7.98 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.81 Total: -24.71 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.75 Total: -26.06 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.42 Total: -14.81 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.43 Total: -4.38 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.88 -7.40 -38.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535702704.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.775 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds