Wall clock time and date at job start Mon Mar 30 2020 03:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76198 * 103.00257 * 2 1 4 4 C 1.38998 * 120.07749 * 0.02562 * 3 2 1 5 5 C 1.38065 * 119.91876 * 180.02562 * 4 3 2 6 6 C 1.38320 * 120.07976 * 0.02562 * 5 4 3 7 7 C 1.38281 * 120.16288 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.96257 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47532 * 205.00044 * 8 7 6 10 10 O 1.42900 * 109.47307 * 325.00762 * 8 7 6 11 11 C 1.50703 * 109.46789 * 85.00217 * 8 7 6 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38098 * 120.08028 * 0.25468 * 7 6 5 20 20 H 1.09003 * 109.47342 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47517 * 300.00275 * 1 2 3 22 22 H 1.09006 * 109.46977 * 60.00109 * 1 2 3 23 23 H 1.07995 * 120.04317 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95649 * 180.02562 * 5 4 3 25 25 H 1.08002 * 119.92164 * 179.97438 * 6 5 4 26 26 H 0.96700 * 114.00022 * 59.99222 * 10 8 7 27 27 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 28 28 H 1.08002 * 120.04463 * 179.74812 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0106 0.0000 6 6 2.8328 4.4131 -0.0016 7 6 3.8455 3.4715 -0.0021 8 6 5.2857 3.9151 -0.0045 9 1 5.9066 3.1316 -0.4389 10 8 5.4151 5.1094 -0.7783 11 6 5.7312 4.1824 1.4102 12 1 5.0406 4.0445 2.2290 13 6 7.0204 4.6032 1.6591 14 7 7.8615 4.7706 0.6621 15 14 7.5727 4.9339 3.4126 16 1 7.3078 6.3543 3.7555 17 1 9.0269 4.6584 3.5339 18 1 6.8227 4.0520 4.3426 19 6 3.5386 2.1250 -0.0064 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.1617 2.3527 0.0014 24 1 0.7211 4.7487 0.0008 25 1 3.0758 5.4654 -0.0024 26 1 4.8887 5.8506 -0.4487 27 1 7.5747 4.5985 -0.2484 28 1 4.3300 1.3901 -0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535702704.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:45 Heat of formation + Delta-G solvation = -59.354387 kcal Electronic energy + Delta-G solvation = -12879.024176 eV Core-core repulsion = 10598.705241 eV Total energy + Delta-G solvation = -2280.318935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38017 -37.72622 -34.38036 -32.64139 -31.92286 -29.88475 -28.08820 -25.11962 -23.71736 -22.37729 -19.46256 -18.82586 -17.31685 -16.85710 -16.51177 -15.76063 -15.38596 -14.93788 -14.82938 -14.68953 -14.50411 -14.22396 -13.57702 -13.44903 -12.77858 -12.65014 -12.36689 -12.24465 -11.95716 -11.48055 -11.17984 -10.75507 -10.64297 -10.37315 -9.67180 -8.66145 -8.39512 -6.52904 0.24471 0.40904 0.55373 1.50083 1.51282 1.59773 1.78341 2.51551 2.74755 3.11063 3.84837 3.90089 3.98437 4.17037 4.27478 4.29309 4.41417 4.52041 4.68380 4.84230 4.99840 5.10229 5.23262 5.42704 5.70396 5.81881 5.95786 6.06677 6.49801 7.04825 7.41922 8.70013 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.007185 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.798554 B = 3896.324910 C = 4149.090647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.163 6.163 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.075 4.075 8 C 0.244 3.756 9 H 0.026 0.974 10 O -0.586 6.586 11 C -0.646 4.646 12 H 0.046 0.954 13 C -0.014 4.014 14 N -0.917 5.917 15 Si 1.119 2.881 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.124 4.124 20 H 0.129 0.871 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.156 0.844 24 H 0.161 0.839 25 H 0.127 0.873 26 H 0.366 0.634 27 H 0.268 0.732 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 -5.127 0.157 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.078 5.922 3 C -0.199 4.199 4 C -0.169 4.169 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.077 4.077 8 C 0.186 3.814 9 H 0.044 0.956 10 O -0.393 6.393 11 C -0.683 4.683 12 H 0.064 0.936 13 C -0.217 4.217 14 N -0.552 5.552 15 Si 0.940 3.060 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.148 4.148 20 H 0.147 0.853 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.174 0.826 24 H 0.179 0.821 25 H 0.145 0.855 26 H 0.214 0.786 27 H 0.078 0.922 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.603 -6.113 0.685 15.845 hybrid contribution -1.821 0.812 -0.819 2.156 sum -16.424 -5.301 -0.134 17.259 Atomic orbital electron populations 1.23772 0.90637 1.08683 1.06712 1.85544 1.10890 1.02731 1.93015 1.21755 0.95904 0.97577 1.04652 1.21431 0.98795 0.92791 1.03920 1.21362 0.95910 0.96210 0.97708 1.21104 0.92950 0.99527 1.01618 1.20789 0.97418 0.93759 0.95705 1.18395 0.88267 0.83893 0.90801 0.95632 1.86460 1.72447 1.23150 1.57220 1.22621 1.00363 1.52588 0.92742 0.93565 1.27364 0.93179 0.92238 1.08877 1.70754 1.38412 1.44631 1.01420 0.82922 0.75843 0.77631 0.69566 1.19344 1.20707 1.19922 1.20534 0.95086 0.95306 1.03849 0.85274 0.88701 0.88552 0.82613 0.82148 0.85522 0.78611 0.92161 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.15 113.37 1.04 -0.97 15 2 S -0.16 -4.48 22.56 -56.49 -1.27 -5.75 15 3 C -0.09 -2.94 6.11 22.63 0.14 -2.80 15 4 C -0.15 -4.09 9.36 22.41 0.21 -3.88 15 5 C -0.09 -2.68 10.04 22.25 0.22 -2.46 15 6 C -0.13 -4.91 9.33 22.30 0.21 -4.70 15 7 C -0.07 -3.35 4.94 -19.89 -0.10 -3.45 15 8 C 0.24 13.03 2.67 29.10 0.08 13.11 15 9 H 0.03 1.53 7.91 -2.39 -0.02 1.51 15 10 O -0.59 -30.56 11.81 -148.98 -1.76 -32.32 15 11 C -0.65 -36.95 8.75 25.60 0.22 -36.72 15 12 H 0.05 2.65 7.74 -2.91 -0.02 2.62 15 13 C -0.01 -0.83 5.40 84.65 0.46 -0.37 15 14 N -0.92 -57.16 13.53 21.45 0.29 -56.87 15 15 Si 1.12 50.43 29.90 68.60 2.05 52.48 15 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 19 C -0.12 -5.24 9.42 22.41 0.21 -5.03 15 20 H 0.13 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.09 1.29 7.75 -2.39 -0.02 1.27 15 22 H 0.10 1.27 7.75 -2.39 -0.02 1.25 15 23 H 0.16 3.06 5.88 -2.91 -0.02 3.04 15 24 H 0.16 3.28 8.06 -2.91 -0.02 3.26 15 25 H 0.13 4.41 6.61 -2.91 -0.02 4.39 15 26 H 0.37 16.64 7.38 -74.06 -0.55 16.09 15 27 H 0.27 17.26 6.47 -92.71 -0.60 16.66 15 28 H 0.10 4.58 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -69.77 256.04 2.79 -66.99 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.79 Total: 22.75 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 2.69 Total: -47.28 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.29 Total: -56.87 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.76 Total: -32.32 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -1.27 Total: -5.75 kcal Total: -69.77 2.79 -66.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535702704.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.631 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds