Wall clock time and date at job start Mon Mar 30 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38633 * 120.40013 * 2 1 4 4 C 1.38604 * 118.57278 * 179.97438 * 3 2 1 5 5 N 1.32272 * 119.19772 * 359.75335 * 4 3 2 6 6 C 1.32541 * 120.73878 * 0.50244 * 5 4 3 7 7 S 1.76201 * 119.22501 * 179.76251 * 6 5 4 8 8 C 1.81002 * 99.99823 * 359.72693 * 7 6 5 9 9 H 1.09002 * 109.47154 * 55.00220 * 8 7 6 10 10 C 1.52997 * 109.47326 * 295.00037 * 8 7 6 11 11 C 1.50699 * 109.47061 * 175.00003 * 8 7 6 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47319 * 60.00570 * 15 13 11 17 17 H 1.48503 * 109.46734 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47266 * 300.00384 * 15 13 11 19 19 N 1.32239 * 120.39496 * 179.97438 * 2 1 3 20 20 H 1.08993 * 109.47360 * 270.02593 * 1 2 3 21 21 H 1.08998 * 109.46734 * 30.02217 * 1 2 3 22 22 H 1.09005 * 109.47256 * 150.02142 * 1 2 3 23 23 H 1.08004 * 120.71913 * 359.95498 * 3 2 1 24 24 H 1.07997 * 120.39799 * 179.97438 * 4 3 2 25 25 H 1.08996 * 109.47853 * 180.02562 * 10 8 7 26 26 H 1.09002 * 109.47153 * 300.00184 * 10 8 7 27 27 H 1.08998 * 109.47533 * 59.99813 * 10 8 7 28 28 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2086 1.1957 0.0000 4 6 3.5939 1.1515 0.0005 5 7 4.2020 -0.0231 0.0060 6 6 3.5019 -1.1485 0.0009 7 16 4.3530 -2.6913 0.0022 8 6 6.0656 -2.1053 0.0024 9 1 6.2183 -1.4295 0.8439 10 6 6.3513 -1.3642 -1.3052 11 6 6.9990 -3.2819 0.1273 12 1 6.5996 -4.2828 0.1989 13 6 8.3628 -3.0806 0.1491 14 7 8.8491 -1.8618 0.0614 15 14 9.5198 -4.5390 0.3031 16 1 9.3114 -5.4595 -0.8434 17 1 10.9249 -4.0583 0.3034 18 1 9.2430 -5.2586 1.5723 19 7 2.1761 -1.1406 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6869 2.1414 -0.0007 24 1 4.1698 2.0651 0.0001 25 1 7.3827 -1.0118 -1.3054 26 1 6.1986 -2.0401 -2.1467 27 1 5.6762 -0.5133 -1.3957 28 1 9.8086 -1.7201 0.0770 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051331623.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:27 Heat of formation + Delta-G solvation = 36.785099 kcal Electronic energy + Delta-G solvation = -12812.073117 eV Core-core repulsion = 10568.215854 eV Total energy + Delta-G solvation = -2243.857263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42836 -34.37057 -33.77141 -32.15255 -30.31041 -28.29827 -25.30256 -24.16736 -22.63288 -21.24605 -17.77541 -17.00776 -16.04475 -15.44027 -14.95906 -14.79124 -14.09353 -13.40733 -13.19299 -13.02076 -12.57369 -12.29738 -11.86632 -11.31589 -10.96314 -10.93022 -10.50772 -10.33691 -10.20881 -10.05425 -9.59853 -9.30310 -8.89308 -8.79160 -8.42700 -6.91278 -6.13791 -4.24795 1.17750 1.45368 2.17006 3.27728 3.31301 3.33922 3.51199 4.03485 4.34175 4.45956 4.73028 5.00029 5.17511 5.30192 5.38300 5.50414 5.52170 5.88460 6.03344 6.60776 6.80938 6.95761 7.11728 7.35483 7.49047 7.70607 7.90588 8.11113 8.37278 8.73743 9.38846 10.91260 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.063286 B = 0.006918 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.329340 B = 4046.547812 C = 4374.892299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.178 3.822 3 C -0.261 4.261 4 C 0.160 3.840 5 N -0.511 5.511 6 C 0.311 3.689 7 S -0.046 6.046 8 C 0.093 3.907 9 H 0.060 0.940 10 C -0.137 4.137 11 C -0.518 4.518 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.881 5.881 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.516 5.516 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.138 0.862 24 H 0.164 0.836 25 H 0.091 0.909 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 6.116 -0.528 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.028 3.972 3 C -0.289 4.289 4 C -0.010 4.010 5 N -0.229 5.229 6 C -0.062 4.062 7 S 0.194 5.806 8 C -0.035 4.035 9 H 0.078 0.922 10 C -0.196 4.196 11 C -0.558 4.558 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.519 5.519 15 Si 0.732 3.268 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.235 5.235 20 H 0.099 0.901 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.156 0.844 24 H 0.181 0.819 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.018 4.082 -0.514 11.761 hybrid contribution 0.679 1.548 0.082 1.693 sum -10.339 5.631 -0.432 11.781 Atomic orbital electron populations 1.20718 0.88312 1.03585 1.03270 1.21678 0.97203 0.88571 0.89770 1.22457 0.96540 0.99843 1.10025 1.23233 0.92064 0.96407 0.89295 1.69083 1.39826 0.98156 1.15811 1.25554 0.89524 0.98635 0.92438 1.85798 1.07479 1.00215 1.87093 1.21076 0.84117 0.98837 0.99439 0.92173 1.22022 1.03748 0.98047 0.95817 1.20631 0.90281 0.92042 1.52844 0.91705 1.24869 0.97624 0.96274 0.94377 1.69893 1.13287 1.19954 1.48720 0.86439 0.79306 0.82079 0.78969 1.19940 1.21035 1.19943 1.68473 1.08208 1.29734 1.17046 0.90056 0.90485 0.90187 0.84367 0.81917 0.89063 0.95274 0.94655 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.22 36.01 0.37 -0.68 15 2 C 0.18 2.71 6.82 -82.27 -0.56 2.15 15 3 C -0.26 -3.55 9.85 -39.30 -0.39 -3.94 15 4 C 0.16 2.54 11.30 -17.23 -0.19 2.35 15 5 N -0.51 -10.55 6.86 -13.44 -0.09 -10.64 15 6 C 0.31 6.70 7.65 -90.84 -0.69 6.00 15 7 S -0.05 -1.07 21.62 -107.50 -2.32 -3.39 15 8 C 0.09 2.43 2.13 -27.88 -0.06 2.37 15 9 H 0.06 1.70 7.95 -51.92 -0.41 1.29 15 10 C -0.14 -3.44 8.73 37.16 0.32 -3.11 15 11 C -0.52 -14.29 8.58 -34.44 -0.30 -14.58 15 12 H 0.06 1.77 7.71 -52.49 -0.40 1.36 15 13 C 0.07 1.99 5.30 -17.82 -0.09 1.90 15 14 N -0.88 -24.70 11.32 55.43 0.63 -24.07 15 15 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 15 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 19 N -0.52 -9.98 10.34 -9.67 -0.10 -10.08 15 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 0.59 8.09 -51.93 -0.42 0.17 15 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.14 1.32 8.06 -52.48 -0.42 0.89 15 24 H 0.16 2.01 8.06 -52.49 -0.42 1.59 15 25 H 0.09 2.46 6.07 -51.93 -0.32 2.15 15 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.03 0.83 5.65 -51.93 -0.29 0.54 15 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 255.88 15.07 3.86 3.86 Total: -1.00 -30.32 255.88 -7.74 -38.07 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.09 Total: -2.16 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.59 Total: -7.54 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.44 Total: -44.80 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.32 Total: -3.39 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.32 -7.74 -38.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051331623.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.851 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds