Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.34944 * 116.99760 * 149.99793 * 4 2 1 6 6 O 1.21624 * 120.00460 * 0.02562 * 5 4 2 7 7 C 1.46572 * 120.00040 * 179.97438 * 5 4 2 8 8 C 1.38589 * 125.68162 * 180.02562 * 7 5 4 9 9 C 1.38818 * 107.10536 * 179.97438 * 8 7 5 10 10 C 1.40030 * 106.81654 * 359.97438 * 9 8 7 11 11 C 1.39384 * 125.95086 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99812 * 359.97438 * 11 10 9 13 13 C 1.40641 * 119.99657 * 180.02562 * 11 10 9 14 14 N 1.30469 * 120.00297 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99756 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46950 * 89.99838 * 15 13 11 17 17 H 1.48498 * 109.47127 * 210.00050 * 15 13 11 18 18 H 1.48502 * 109.46890 * 330.00090 * 15 13 11 19 19 O 1.34879 * 125.67489 * 359.69310 * 7 5 4 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 26 26 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 27 27 H 1.08001 * 126.44358 * 359.91962 * 8 7 5 28 28 H 1.08001 * 126.59081 * 180.02562 * 9 8 7 29 29 H 0.97008 * 120.00052 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1922 -1.3096 1.0659 6 8 3.8046 -1.2915 0.0152 7 6 3.7430 -2.0213 2.2228 8 6 4.9451 -2.7104 2.2507 9 6 5.0870 -3.2324 3.5291 10 6 3.9543 -2.8420 4.2541 11 6 3.6889 -3.1517 5.5869 12 1 4.3913 -3.7449 6.1536 13 6 2.5059 -2.6926 6.1934 14 7 1.6572 -1.9765 5.5086 15 14 2.1499 -3.1083 7.9794 16 1 2.7153 -2.0512 8.8559 17 1 0.6815 -3.1894 8.1856 18 1 2.7700 -4.4149 8.3166 19 8 3.1672 -2.1094 3.4393 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 5.6403 -2.8213 1.4316 28 1 5.9126 -3.8249 3.8947 29 1 0.8414 -1.6595 5.9270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076561726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = -104.388649 kcal Electronic energy + Delta-G solvation = -15126.934966 eV Core-core repulsion = 12401.910328 eV Total energy + Delta-G solvation = -2725.024638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44169 -39.34826 -35.97931 -33.99671 -32.56564 -31.25028 -29.40227 -27.03436 -26.00641 -22.74590 -20.72534 -19.91558 -19.46441 -17.66377 -17.12565 -15.99082 -15.36514 -15.26733 -14.22613 -14.01726 -13.63804 -13.14423 -12.66685 -12.53921 -12.06400 -11.97234 -11.51026 -11.50069 -11.38872 -11.36573 -11.29722 -10.82981 -10.50640 -10.26575 -9.91553 -9.72217 -9.65819 -8.51221 -7.49156 -7.13158 -4.78482 2.29679 2.84196 2.90013 2.95301 3.55370 3.66512 3.67094 4.27412 4.78411 4.95478 5.12675 5.26198 5.46764 5.72857 5.75839 5.96069 6.04213 6.25547 6.30755 6.40694 6.49837 6.68977 6.83056 7.09616 7.18420 7.39112 7.66078 7.84623 8.24056 8.35521 8.71065 9.13151 9.82531 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.007996 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.307793 B = 3501.126692 C = 4230.112095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 C -0.168 4.168 4 O -0.340 6.340 5 C 0.550 3.450 6 O -0.548 6.548 7 C -0.232 4.232 8 C -0.056 4.056 9 C -0.379 4.379 10 C 0.230 3.770 11 C -0.422 4.422 12 H 0.112 0.888 13 C 0.062 3.938 14 N -0.741 5.741 15 Si 0.929 3.071 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.256 1.256 19 O -0.144 6.144 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 2.616 -2.012 4.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.022 3.978 3 C -0.226 4.226 4 O -0.258 6.258 5 C 0.405 3.595 6 O -0.444 6.444 7 C -0.279 4.279 8 C -0.076 4.076 9 C -0.399 4.399 10 C 0.174 3.826 11 C -0.449 4.449 12 H 0.130 0.870 13 C -0.163 4.163 14 N -0.365 5.365 15 Si 0.751 3.249 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.179 1.179 19 O -0.042 6.042 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.383 2.920 -2.328 5.039 hybrid contribution -0.016 -0.124 0.519 0.534 sum -3.399 2.796 -1.809 4.758 Atomic orbital electron populations 1.21856 0.93205 1.02881 1.02417 1.22145 0.94555 0.92588 0.88549 1.22221 1.02123 0.95987 1.02228 1.86401 1.37164 1.63042 1.39169 1.19387 0.78398 0.75705 0.86039 1.90741 1.60914 1.63373 1.29416 1.19978 0.99848 1.20970 0.87089 1.21418 0.94095 0.95042 0.97024 1.21495 1.03885 1.19409 0.95143 1.19848 0.86444 0.86060 0.90236 1.19074 1.04587 1.28645 0.92610 0.87010 1.26364 0.95147 0.93085 1.01738 1.69648 1.07656 1.20973 1.38221 0.85953 0.78670 0.80406 0.79852 1.18794 1.19625 1.17946 1.84562 1.42923 1.59088 1.17630 0.91541 0.91167 0.91897 0.90512 0.92096 0.91558 0.91794 0.85491 0.85658 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.56 37.16 0.36 -1.71 15 2 C 0.08 1.37 3.14 -26.73 -0.08 1.29 15 3 C -0.17 -2.59 9.53 37.16 0.35 -2.23 15 4 O -0.34 -7.82 9.77 -42.76 -0.42 -8.24 15 5 C 0.55 13.80 7.88 34.09 0.27 14.07 15 6 O -0.55 -13.75 16.10 -19.36 -0.31 -14.06 15 7 C -0.23 -6.23 7.21 -36.09 -0.26 -6.49 15 8 C -0.06 -1.40 10.61 -39.24 -0.42 -1.81 15 9 C -0.38 -9.49 10.90 -38.70 -0.42 -9.92 15 10 C 0.23 6.23 6.78 -38.48 -0.26 5.97 15 11 C -0.42 -10.59 9.32 -38.25 -0.36 -10.95 15 12 H 0.11 2.53 7.86 -52.49 -0.41 2.12 15 13 C 0.06 1.48 5.51 -17.22 -0.09 1.38 15 14 N -0.74 -18.80 11.98 55.59 0.67 -18.14 15 15 Si 0.93 17.04 29.57 -169.99 -5.03 12.01 15 16 H -0.26 -4.75 7.11 56.52 0.40 -4.34 15 17 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 18 H -0.26 -4.56 7.11 56.52 0.40 -4.15 15 19 O -0.14 -4.15 8.97 2.00 0.02 -4.13 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.08 1.38 7.11 -51.93 -0.37 1.01 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 27 H 0.13 2.84 8.06 -52.49 -0.42 2.42 15 28 H 0.13 2.79 8.06 -52.49 -0.42 2.37 15 29 H 0.29 6.59 8.29 -40.82 -0.34 6.25 15 LS Contribution 266.37 15.07 4.01 4.01 Total: -1.00 -29.62 266.37 -5.27 -34.89 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.30 Total: 4.06 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.92 Total: -10.41 kcal Atomic # 7 Polarization: -18.80 SS G_CDS: 0.67 Total: -18.14 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.71 Total: -26.43 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.62 -5.27 -34.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076561726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.495 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds