Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.34944 * 116.99760 * 149.99793 * 4 2 1 6 6 O 1.21624 * 120.00460 * 0.02562 * 5 4 2 7 7 C 1.46572 * 120.00040 * 179.97438 * 5 4 2 8 8 C 1.38589 * 125.68162 * 180.02562 * 7 5 4 9 9 C 1.38818 * 107.10536 * 179.97438 * 8 7 5 10 10 C 1.40030 * 106.81654 * 359.97438 * 9 8 7 11 11 C 1.39384 * 125.95086 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99812 * 359.97438 * 11 10 9 13 13 C 1.40641 * 119.99657 * 180.02562 * 11 10 9 14 14 N 1.30469 * 120.00297 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99756 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46950 * 89.99838 * 15 13 11 17 17 H 1.48498 * 109.47127 * 210.00050 * 15 13 11 18 18 H 1.48502 * 109.46890 * 330.00090 * 15 13 11 19 19 O 1.34879 * 125.67489 * 359.69310 * 7 5 4 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 26 26 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 27 27 H 1.08001 * 126.44358 * 359.91962 * 8 7 5 28 28 H 1.08001 * 126.59081 * 180.02562 * 9 8 7 29 29 H 0.97008 * 120.00052 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1922 -1.3096 1.0659 6 8 3.8046 -1.2915 0.0152 7 6 3.7430 -2.0213 2.2228 8 6 4.9451 -2.7104 2.2507 9 6 5.0870 -3.2324 3.5291 10 6 3.9543 -2.8420 4.2541 11 6 3.6889 -3.1517 5.5869 12 1 4.3913 -3.7449 6.1536 13 6 2.5059 -2.6926 6.1934 14 7 1.6572 -1.9765 5.5086 15 14 2.1499 -3.1083 7.9794 16 1 2.7153 -2.0512 8.8559 17 1 0.6815 -3.1894 8.1856 18 1 2.7700 -4.4149 8.3166 19 8 3.1672 -2.1094 3.4393 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 5.6403 -2.8213 1.4316 28 1 5.9126 -3.8249 3.8947 29 1 0.8414 -1.6595 5.9270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076561726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = -121.561242 kcal Electronic energy + Delta-G solvation = -15127.679626 eV Core-core repulsion = 12401.910328 eV Total energy + Delta-G solvation = -2725.769297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41093 -41.14306 -37.74722 -35.86870 -34.01451 -33.23725 -31.34682 -28.22939 -27.90520 -24.54088 -22.35144 -21.83053 -21.30275 -19.60581 -18.96134 -17.78134 -17.15185 -16.98504 -15.98006 -15.75217 -15.24605 -14.70157 -14.24587 -14.07289 -13.68140 -13.32754 -13.18816 -13.16583 -13.06383 -13.02672 -12.72568 -12.57439 -11.91484 -11.87324 -11.63644 -11.42296 -11.38421 -10.50941 -9.49064 -8.93727 -6.74925 0.35657 1.31075 1.39602 1.59050 1.87119 1.88314 2.12758 2.31888 2.89689 3.04508 3.83517 3.97371 4.13834 4.26841 4.35630 4.65148 4.75326 4.80542 4.82293 4.89033 4.93583 5.09048 5.16074 5.20916 5.32190 5.58515 5.76323 5.92686 6.34043 6.41183 6.80301 7.18395 8.05105 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.007996 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.307793 B = 3501.126692 C = 4230.112095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 C -0.162 4.162 4 O -0.358 6.358 5 C 0.550 3.450 6 O -0.558 6.558 7 C -0.273 4.273 8 C -0.055 4.055 9 C -0.384 4.384 10 C 0.192 3.808 11 C -0.436 4.436 12 H 0.134 0.866 13 C 0.017 3.983 14 N -0.781 5.781 15 Si 1.014 2.986 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.243 1.243 19 O -0.172 6.172 20 H 0.065 0.935 21 H 0.110 0.890 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 2.614 -0.945 4.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 C -0.220 4.220 4 O -0.275 6.275 5 C 0.404 3.596 6 O -0.456 6.456 7 C -0.320 4.320 8 C -0.074 4.074 9 C -0.404 4.404 10 C 0.137 3.863 11 C -0.462 4.462 12 H 0.152 0.848 13 C -0.205 4.205 14 N -0.406 5.406 15 Si 0.831 3.169 16 H -0.179 1.179 17 H -0.189 1.189 18 H -0.165 1.165 19 O -0.071 6.071 20 H 0.084 0.916 21 H 0.129 0.871 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.977 2.924 -1.290 5.102 hybrid contribution 0.133 -0.099 0.174 0.240 sum -3.844 2.825 -1.116 4.900 Atomic orbital electron populations 1.21887 0.90243 1.03132 1.04349 1.22703 0.96869 0.93314 0.86537 1.22207 1.00732 0.94750 1.04279 1.86372 1.36142 1.63134 1.41865 1.19261 0.78993 0.75778 0.85524 1.90701 1.61399 1.63993 1.29484 1.20535 1.01169 1.22865 0.87408 1.21726 0.93837 0.94162 0.97717 1.21818 1.04065 1.19479 0.94989 1.20553 0.87372 0.86911 0.91418 1.19719 1.05777 1.28444 0.92274 0.84830 1.27552 0.94035 0.92013 1.06890 1.69736 1.08448 1.21519 1.40860 0.84715 0.78774 0.80698 0.72723 1.17908 1.18896 1.16546 1.84512 1.44040 1.60126 1.18467 0.91604 0.87122 0.92537 0.91095 0.94243 0.87578 0.91618 0.83340 0.83150 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.56 71.98 0.69 -3.03 15 2 C 0.06 2.13 3.14 30.60 0.10 2.22 15 3 C -0.16 -4.84 9.53 71.98 0.69 -4.15 15 4 O -0.36 -16.89 9.77 -57.07 -0.56 -17.45 15 5 C 0.55 28.45 7.88 70.00 0.55 29.00 15 6 O -0.56 -28.61 16.10 19.43 0.31 -28.30 15 7 C -0.27 -15.18 7.21 24.53 0.18 -15.01 15 8 C -0.05 -2.78 10.61 22.49 0.24 -2.54 15 9 C -0.38 -19.29 10.90 22.84 0.25 -19.04 15 10 C 0.19 10.61 6.78 22.98 0.16 10.77 15 11 C -0.44 -21.76 9.32 23.13 0.22 -21.54 15 12 H 0.13 5.86 7.86 -2.91 -0.02 5.83 15 13 C 0.02 0.80 5.51 85.48 0.47 1.27 15 14 N -0.78 -39.95 11.98 21.95 0.26 -39.68 15 15 Si 1.01 33.36 29.57 68.60 2.03 35.39 15 16 H -0.25 -8.03 7.11 99.48 0.71 -7.33 15 17 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 18 H -0.24 -7.43 7.11 99.48 0.71 -6.72 15 19 O -0.17 -10.25 8.97 -13.89 -0.12 -10.38 15 20 H 0.06 1.76 8.14 -2.39 -0.02 1.75 15 21 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.07 2.55 7.11 -2.39 -0.02 2.54 15 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 25 H 0.11 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 15 27 H 0.15 6.65 8.06 -2.91 -0.02 6.63 15 28 H 0.15 6.55 8.06 -2.91 -0.02 6.53 15 29 H 0.30 13.65 8.29 -92.70 -0.77 12.88 15 Total: -1.00 -65.57 266.37 6.60 -58.97 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 1.15 Total: 23.50 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.53 Total: -22.05 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.26 Total: -39.68 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.37 Total: -56.12 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Total: -65.57 6.60 -58.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076561726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.592 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds