Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31080 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47033 * 264.63087 * 3 2 1 5 5 H 1.48501 * 109.47124 * 24.62829 * 3 2 1 6 6 H 1.48498 * 109.47027 * 144.62840 * 3 2 1 7 7 C 1.39634 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99894 * 347.70661 * 7 2 1 9 9 C 1.41022 * 120.00088 * 167.70321 * 7 2 1 10 10 C 1.37973 * 122.82193 * 174.09244 * 9 7 2 11 11 S 1.76171 * 108.03664 * 179.97438 * 10 9 7 12 12 C 1.75977 * 90.34846 * 359.97438 * 11 10 9 13 13 N 1.38014 * 124.93043 * 179.97438 * 12 11 10 14 14 C 1.48532 * 110.99670 * 242.62185 * 13 12 11 15 15 C 1.54934 * 103.22302 * 159.72253 * 14 13 12 16 16 C 1.54591 * 102.92467 * 322.58713 * 15 14 13 17 17 C 1.47897 * 111.00000 * 0.02562 * 13 12 11 18 18 N 1.29462 * 110.13001 * 0.22679 * 12 11 10 19 19 H 0.97002 * 119.99537 * 0.02562 * 1 2 3 20 20 H 1.07994 * 125.98099 * 359.97182 * 10 9 7 21 21 H 1.08995 * 110.66920 * 278.16135 * 14 13 12 22 22 H 1.09004 * 110.66436 * 41.28733 * 14 13 12 23 23 H 1.08999 * 110.72364 * 204.22829 * 15 14 13 24 24 H 1.09003 * 110.87713 * 81.01960 * 15 14 13 25 25 H 1.09006 * 110.31215 * 263.04193 * 16 15 14 26 26 H 1.09002 * 110.31056 * 140.87612 * 16 15 14 27 27 H 1.09004 * 109.92029 * 333.50452 * 17 13 12 28 28 H 1.08999 * 109.92150 * 94.80505 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.6058 1.9809 -1.3939 5 1 1.3901 2.6828 0.5835 6 1 3.4810 1.4755 0.8105 7 6 2.0090 -1.2093 0.0005 8 1 1.4875 -2.1338 0.2001 9 6 3.3949 -1.2234 -0.2596 10 6 4.1634 -2.3648 -0.1576 11 16 5.8243 -1.9423 -0.5655 12 6 5.3438 -0.2716 -0.8382 13 7 6.1968 0.7436 -1.2211 14 6 6.2625 1.8036 -0.1827 15 6 7.5895 2.5349 -0.5063 16 6 8.5226 1.3818 -0.9415 17 6 7.5801 0.2437 -1.3753 18 7 4.0749 -0.1320 -0.6223 19 1 -0.4849 0.8401 -0.0004 20 1 3.8088 -3.3454 0.1232 21 1 5.4160 2.4842 -0.2736 22 1 6.2986 1.3640 0.8140 23 1 7.9808 3.0341 0.3801 24 1 7.4520 3.2477 -1.3194 25 1 9.1432 1.0609 -0.1048 26 1 9.1470 1.6955 -1.7781 27 1 7.7331 -0.6280 -0.7389 28 1 7.7671 -0.0165 -2.4171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082688594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 38.760672 kcal Electronic energy + Delta-G solvation = -13350.887002 eV Core-core repulsion = 11107.115406 eV Total energy + Delta-G solvation = -2243.771595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40787 -37.50863 -33.36204 -31.90270 -29.04463 -28.52225 -25.83627 -23.17271 -21.13459 -20.87843 -19.02346 -17.88170 -16.65293 -15.82353 -15.08930 -14.74727 -14.20449 -13.61833 -13.13439 -12.87458 -12.52137 -12.24409 -12.09462 -11.57337 -11.46862 -11.19481 -10.98448 -10.68090 -10.57452 -10.26888 -9.94823 -9.36857 -9.02134 -8.26037 -7.95848 -7.27625 -6.83175 -4.48430 1.91635 2.31702 3.27740 3.35208 3.39437 3.58796 3.88547 4.07582 4.36309 4.58766 4.71618 4.92391 5.28914 5.31788 5.45410 5.68842 5.71624 5.78513 5.91633 6.02047 6.04574 6.21164 6.66902 7.00702 7.05319 7.19186 7.55852 8.20102 8.48797 8.58843 9.19215 10.14863 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.011914 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.763884 B = 2349.520708 C = 3117.847173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.082 3.918 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.322 1.322 6 H -0.263 1.263 7 C -0.412 4.412 8 H 0.097 0.903 9 C 0.224 3.776 10 C -0.429 4.429 11 S -0.061 6.061 12 C 0.259 3.741 13 N -0.432 5.432 14 C 0.045 3.955 15 C -0.124 4.124 16 C -0.127 4.127 17 C 0.032 3.968 18 N -0.498 5.498 19 H 0.285 0.715 20 H 0.145 0.855 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.976 4.769 -0.468 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.138 4.138 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.254 1.254 6 H -0.189 1.189 7 C -0.445 4.445 8 H 0.115 0.885 9 C 0.105 3.895 10 C -0.567 4.567 11 S 0.181 5.819 12 C -0.114 4.114 13 N -0.153 5.153 14 C -0.082 4.082 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.096 4.096 18 N -0.221 5.221 19 H 0.095 0.905 20 H 0.163 0.837 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.144 4.975 -1.079 15.032 hybrid contribution -0.524 0.123 0.713 0.894 sum 13.619 5.098 -0.365 14.546 Atomic orbital electron populations 1.69769 1.08215 1.30492 1.35258 1.26235 0.94937 1.02879 0.89769 0.85023 0.77204 0.76550 0.80045 1.19863 1.25370 1.18865 1.18770 0.88760 0.96016 1.40947 0.88503 1.17845 0.94238 0.84369 0.93072 1.25533 0.90898 1.03071 1.37223 1.83813 1.15998 1.08896 1.73169 1.25673 0.92538 0.92738 1.00453 1.61035 1.06540 1.07667 1.40059 1.23339 0.98885 0.93027 0.92995 1.22537 0.94274 0.97565 1.01824 1.22389 0.97609 0.94984 1.01539 1.23125 0.85869 0.97523 1.03069 1.65762 1.04344 1.32039 1.19957 0.90482 0.83704 0.89114 0.92499 0.90484 0.90345 0.90981 0.90503 0.91738 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.86 13.94 55.53 0.77 -22.08 15 2 C 0.08 2.30 5.51 -17.35 -0.10 2.21 15 3 Si 0.98 24.52 25.58 -169.99 -4.35 20.17 15 4 H -0.27 -7.02 7.11 56.52 0.40 -6.61 15 5 H -0.32 -7.74 7.11 56.52 0.40 -7.34 15 6 H -0.26 -6.57 6.53 56.52 0.37 -6.20 15 7 C -0.41 -11.90 9.76 -38.01 -0.37 -12.27 15 8 H 0.10 2.87 8.06 -52.48 -0.42 2.45 15 9 C 0.22 6.16 6.24 -86.13 -0.54 5.62 15 10 C -0.43 -10.80 11.27 30.64 0.35 -10.46 15 11 S -0.06 -1.29 20.87 -107.50 -2.24 -3.53 15 12 C 0.26 5.84 6.78 -88.44 -0.60 5.24 15 13 N -0.43 -8.07 5.35 -170.09 -0.91 -8.98 15 14 C 0.05 0.74 6.45 -1.90 -0.01 0.73 15 15 C -0.12 -1.42 7.06 -24.87 -0.18 -1.60 15 16 C -0.13 -1.36 6.93 -25.37 -0.18 -1.54 15 17 C 0.03 0.46 6.28 -2.75 -0.02 0.44 15 18 N -0.50 -12.99 5.32 -11.73 -0.06 -13.05 15 19 H 0.29 7.31 8.30 -40.82 -0.34 6.97 15 20 H 0.15 3.49 8.06 -52.49 -0.42 3.07 15 21 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 22 H 0.06 0.97 7.99 -51.93 -0.42 0.55 15 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.06 0.96 5.93 -47.86 -0.28 0.67 15 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 245.26 15.07 3.70 3.70 Total: -1.00 -30.67 245.26 -7.98 -38.65 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -3.25 Total: -3.24 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.64 Total: -11.63 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.20 Total: -44.11 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.35 Total: 20.17 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.24 Total: -3.53 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.67 -7.98 -38.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082688594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.412 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds