Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31080 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47033 * 264.63087 * 3 2 1 5 5 H 1.48501 * 109.47124 * 24.62829 * 3 2 1 6 6 H 1.48498 * 109.47027 * 144.62840 * 3 2 1 7 7 C 1.39634 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99894 * 347.70661 * 7 2 1 9 9 C 1.41022 * 120.00088 * 167.70321 * 7 2 1 10 10 C 1.37973 * 122.82193 * 174.09244 * 9 7 2 11 11 S 1.76171 * 108.03664 * 179.97438 * 10 9 7 12 12 C 1.75977 * 90.34846 * 359.97438 * 11 10 9 13 13 N 1.38014 * 124.93043 * 179.97438 * 12 11 10 14 14 C 1.48532 * 110.99670 * 242.62185 * 13 12 11 15 15 C 1.54934 * 103.22302 * 159.72253 * 14 13 12 16 16 C 1.54591 * 102.92467 * 322.58713 * 15 14 13 17 17 C 1.47897 * 111.00000 * 0.02562 * 13 12 11 18 18 N 1.29462 * 110.13001 * 0.22679 * 12 11 10 19 19 H 0.97002 * 119.99537 * 0.02562 * 1 2 3 20 20 H 1.07994 * 125.98099 * 359.97182 * 10 9 7 21 21 H 1.08995 * 110.66920 * 278.16135 * 14 13 12 22 22 H 1.09004 * 110.66436 * 41.28733 * 14 13 12 23 23 H 1.08999 * 110.72364 * 204.22829 * 15 14 13 24 24 H 1.09003 * 110.87713 * 81.01960 * 15 14 13 25 25 H 1.09006 * 110.31215 * 263.04193 * 16 15 14 26 26 H 1.09002 * 110.31056 * 140.87612 * 16 15 14 27 27 H 1.09004 * 109.92029 * 333.50452 * 17 13 12 28 28 H 1.08999 * 109.92150 * 94.80505 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.6058 1.9809 -1.3939 5 1 1.3901 2.6828 0.5835 6 1 3.4810 1.4755 0.8105 7 6 2.0090 -1.2093 0.0005 8 1 1.4875 -2.1338 0.2001 9 6 3.3949 -1.2234 -0.2596 10 6 4.1634 -2.3648 -0.1576 11 16 5.8243 -1.9423 -0.5655 12 6 5.3438 -0.2716 -0.8382 13 7 6.1968 0.7436 -1.2211 14 6 6.2625 1.8036 -0.1827 15 6 7.5895 2.5349 -0.5063 16 6 8.5226 1.3818 -0.9415 17 6 7.5801 0.2437 -1.3753 18 7 4.0749 -0.1320 -0.6223 19 1 -0.4849 0.8401 -0.0004 20 1 3.8088 -3.3454 0.1232 21 1 5.4160 2.4842 -0.2736 22 1 6.2986 1.3640 0.8140 23 1 7.9808 3.0341 0.3801 24 1 7.4520 3.2477 -1.3194 25 1 9.1432 1.0609 -0.1048 26 1 9.1470 1.6955 -1.7781 27 1 7.7331 -0.6280 -0.7389 28 1 7.7671 -0.0165 -2.4171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082688594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 18.300678 kcal Electronic energy + Delta-G solvation = -13351.774214 eV Core-core repulsion = 11107.115406 eV Total energy + Delta-G solvation = -2244.658807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.88881 -39.20316 -35.36325 -33.32155 -30.50211 -30.01128 -27.88025 -24.69964 -22.42966 -22.17973 -20.90898 -19.71322 -18.29083 -17.08438 -16.98014 -16.58491 -15.67141 -14.99479 -14.83979 -14.56342 -14.04120 -13.86901 -13.60639 -13.14156 -13.04347 -12.70714 -12.48899 -12.21165 -12.17749 -11.81936 -11.45754 -11.33711 -10.73630 -10.10803 -9.80020 -9.08737 -8.92991 -6.61125 0.08228 0.53138 1.33950 1.34907 1.38833 1.58841 1.99579 2.32813 2.53653 3.17765 3.52946 3.72097 3.99165 4.15246 4.25033 4.46078 4.61815 4.78949 4.85737 4.91541 4.98214 5.03659 5.10593 5.21044 5.38157 5.52424 5.73326 5.99024 6.42134 6.53442 7.23137 8.10568 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.011914 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.763884 B = 2349.520708 C = 3117.847173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.049 3.951 3 Si 1.036 2.964 4 H -0.285 1.285 5 H -0.308 1.308 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.069 0.931 9 C 0.211 3.789 10 C -0.448 4.448 11 S 0.020 5.980 12 C 0.262 3.738 13 N -0.444 5.444 14 C 0.036 3.964 15 C -0.112 4.112 16 C -0.116 4.116 17 C 0.024 3.976 18 N -0.540 5.540 19 H 0.294 0.706 20 H 0.146 0.854 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.532 6.017 -0.782 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.167 4.167 3 Si 0.867 3.133 4 H -0.212 1.212 5 H -0.239 1.239 6 H -0.192 1.192 7 C -0.484 4.484 8 H 0.087 0.913 9 C 0.090 3.910 10 C -0.586 4.586 11 S 0.264 5.736 12 C -0.110 4.110 13 N -0.166 5.166 14 C -0.091 4.091 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.103 4.103 18 N -0.265 5.265 19 H 0.105 0.895 20 H 0.164 0.836 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.737 6.211 -1.389 18.844 hybrid contribution -1.408 -0.369 0.742 1.633 sum 16.329 5.842 -0.647 17.355 Atomic orbital electron populations 1.69779 1.08949 1.31611 1.36919 1.26834 0.95517 1.04947 0.89391 0.84171 0.76117 0.73918 0.79076 1.21227 1.23886 1.19162 1.18772 0.90153 0.95546 1.43945 0.91264 1.17887 0.94104 0.85732 0.93267 1.25953 0.94163 1.02817 1.35670 1.83394 1.11572 1.07163 1.71470 1.26285 0.92425 0.94456 0.97884 1.61094 1.08229 1.07201 1.40120 1.23471 1.01255 0.92401 0.91967 1.22560 0.91356 0.97618 1.03437 1.22427 0.96842 0.92854 1.03306 1.23391 0.84142 0.98867 1.03922 1.65692 1.06018 1.31816 1.22941 0.89544 0.83584 0.91005 0.93350 0.87747 0.89438 0.89043 0.87761 0.92200 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.23 13.94 21.78 0.30 -48.93 15 2 C 0.05 2.87 5.51 85.14 0.47 3.34 15 3 Si 1.04 51.83 25.58 68.60 1.75 53.59 15 4 H -0.29 -14.66 7.11 99.48 0.71 -13.96 15 5 H -0.31 -14.35 7.11 99.48 0.71 -13.65 15 6 H -0.27 -13.21 6.53 99.48 0.65 -12.56 15 7 C -0.45 -27.24 9.76 23.29 0.23 -27.01 15 8 H 0.07 4.39 8.06 -2.91 -0.02 4.36 15 9 C 0.21 11.79 6.24 39.49 0.25 12.04 15 10 C -0.45 -22.55 11.27 67.76 0.76 -21.79 15 11 S 0.02 0.82 20.87 -56.49 -1.18 -0.36 15 12 C 0.26 11.41 6.78 179.59 1.22 12.62 15 13 N -0.44 -15.51 5.35 -692.04 -3.70 -19.21 15 14 C 0.04 1.10 6.45 86.65 0.56 1.66 15 15 C -0.11 -2.06 7.06 31.80 0.22 -1.84 15 16 C -0.12 -1.87 6.93 31.47 0.22 -1.65 15 17 C 0.02 0.58 6.28 86.45 0.54 1.13 15 18 N -0.54 -28.13 5.32 -191.01 -1.02 -29.15 15 19 H 0.29 15.48 8.30 -92.71 -0.77 14.71 15 20 H 0.15 7.13 8.06 -2.91 -0.02 7.10 15 21 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.05 1.54 7.99 -2.39 -0.02 1.52 15 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.09 1.18 8.14 -2.38 -0.02 1.16 15 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 27 H 0.06 1.54 5.93 -4.97 -0.03 1.51 15 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -68.33 245.26 1.71 -66.62 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: 1.08 Total: -1.07 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.47 Total: -21.50 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.41 Total: -97.28 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 1.75 Total: 53.59 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.18 Total: -0.36 kcal Total: -68.33 1.71 -66.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082688594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.920 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds