Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35946 * 116.99966 * 2 1 4 4 C 1.37914 * 119.82807 * 180.30287 * 3 2 1 5 5 C 1.40732 * 119.85175 * 180.25321 * 4 3 2 6 6 C 1.41169 * 120.23851 * 179.71949 * 5 4 3 7 7 H 1.08000 * 120.00335 * 208.63841 * 6 5 4 8 8 C 1.39909 * 119.99352 * 28.63851 * 6 5 4 9 9 N 1.30880 * 119.99447 * 197.84579 * 8 6 5 10 10 Si 1.86790 * 120.00464 * 17.84623 * 8 6 5 11 11 H 1.48498 * 109.47305 * 269.99942 * 10 8 6 12 12 H 1.48502 * 109.47295 * 30.00072 * 10 8 6 13 13 H 1.48501 * 109.47111 * 150.00116 * 10 8 6 14 14 C 1.41202 * 119.52778 * 359.44670 * 5 4 3 15 15 O 1.35792 * 120.17248 * 180.25141 * 14 5 4 16 16 C 1.38858 * 119.65672 * 0.27839 * 14 5 4 17 17 O 1.36004 * 119.93175 * 179.97438 * 16 14 5 18 18 C 1.42898 * 116.99889 * 179.97438 * 17 16 14 19 19 C 1.38623 * 120.13310 * 359.97438 * 16 14 5 20 20 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46928 * 299.99809 * 1 2 3 22 22 H 1.08999 * 109.47407 * 59.99996 * 1 2 3 23 23 H 1.08003 * 120.07785 * 359.97438 * 4 3 2 24 24 H 0.97005 * 120.00607 * 355.44193 * 9 8 6 25 25 H 0.96701 * 113.99598 * 89.99955 * 15 14 5 26 26 H 1.09004 * 109.47132 * 59.99658 * 18 17 16 27 27 H 1.08999 * 109.47378 * 179.97438 * 18 17 16 28 28 H 1.09007 * 109.46945 * 299.99751 * 18 17 16 29 29 H 1.08002 * 119.75508 * 179.97438 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4237 1.2794 -0.0063 5 6 4.0631 2.5330 -0.0009 6 6 5.4726 2.6122 -0.0014 7 1 5.9660 3.4599 0.4505 8 6 6.2302 1.5922 -0.5872 9 7 7.5006 1.4715 -0.2967 10 14 5.4287 0.4029 -1.7840 11 1 4.8922 -0.7636 -1.0380 12 1 4.3196 1.0884 -2.4950 13 1 6.4369 -0.0614 -2.7704 14 6 3.2849 3.7112 -0.0009 15 8 3.8882 4.9277 -0.0009 16 6 1.8993 3.6194 -0.0004 17 8 1.1443 4.7506 0.0001 18 6 -0.2749 4.5833 0.0001 19 6 1.2842 2.3771 -0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 4.0104 0.3726 -0.0108 24 1 7.9326 2.1276 0.2724 25 1 4.0630 5.2800 -0.8843 26 1 -0.5755 4.0300 0.8899 27 1 -0.7561 5.5613 0.0010 28 1 -0.5756 4.0308 -0.8902 29 1 0.2061 2.3128 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141566556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -105.012757 kcal Electronic energy + Delta-G solvation = -15535.085967 eV Core-core repulsion = 12810.034266 eV Total energy + Delta-G solvation = -2725.051701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56255 -38.10750 -36.78819 -34.77600 -33.33642 -29.87036 -28.63934 -27.50920 -25.68830 -24.66749 -21.54011 -20.46239 -18.62314 -17.31336 -16.94351 -16.23823 -15.44020 -15.28656 -14.92188 -14.23993 -14.10998 -13.82629 -13.46283 -12.92818 -12.58525 -12.02364 -11.67097 -11.50397 -11.10221 -10.99025 -10.82184 -10.54858 -10.12994 -9.68839 -9.53038 -9.35691 -8.87497 -7.75795 -7.34675 -6.86419 -4.68669 2.47699 2.56751 3.23732 3.34801 3.55482 3.95423 3.99503 4.00000 4.37688 5.15501 5.42877 5.44017 5.47794 5.50384 5.57698 5.71343 5.72396 6.01604 6.13209 6.43430 6.76973 7.13374 7.17872 7.35894 7.47739 7.54791 7.91956 8.13139 8.34479 8.38255 8.62516 9.06224 9.90041 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.012527 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.197409 B = 2234.686504 C = 3147.501827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.185 3.815 4 C -0.292 4.292 5 C 0.129 3.871 6 C -0.487 4.487 7 H 0.088 0.912 8 C 0.043 3.957 9 N -0.802 5.802 10 Si 1.075 2.925 11 H -0.272 1.272 12 H -0.263 1.263 13 H -0.290 1.290 14 C -0.066 4.066 15 O -0.479 6.479 16 C 0.164 3.836 17 O -0.317 6.317 18 C 0.033 3.967 19 C -0.395 4.395 20 H 0.088 0.912 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.119 0.881 24 H 0.289 0.711 25 H 0.352 0.648 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -0.109 -2.200 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.239 6.239 3 C 0.141 3.859 4 C -0.312 4.312 5 C 0.124 3.876 6 C -0.514 4.514 7 H 0.106 0.894 8 C -0.178 4.178 9 N -0.424 5.424 10 Si 0.901 3.099 11 H -0.198 1.198 12 H -0.188 1.188 13 H -0.217 1.217 14 C -0.112 4.112 15 O -0.285 6.285 16 C 0.119 3.881 17 O -0.231 6.231 18 C -0.063 4.063 19 C -0.415 4.415 20 H 0.106 0.894 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.101 0.899 25 H 0.203 0.797 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.590 -1.466 -2.435 10.965 hybrid contribution -0.747 1.467 0.599 1.752 sum -11.337 0.000 -1.836 11.485 Atomic orbital electron populations 1.22839 0.80148 1.02413 1.00749 1.86040 1.20087 1.28508 1.89264 1.18459 0.91616 0.82378 0.93494 1.20234 0.90555 0.97856 1.22506 1.17463 0.93600 0.88868 0.87636 1.20610 0.90895 1.07610 1.32295 0.89372 1.27434 0.95128 0.97944 0.97315 1.70554 1.12411 1.31612 1.27786 0.83544 0.74946 0.75894 0.75485 1.19822 1.18783 1.21712 1.17624 0.85682 0.85600 1.22300 1.84849 1.80658 1.31950 1.31050 1.18958 0.89888 0.84220 0.95026 1.86096 1.17381 1.30424 1.89174 1.22845 0.80562 1.02238 1.00652 1.20340 0.98182 0.91414 1.31545 0.89356 0.93408 0.93415 0.86331 0.89921 0.79656 0.93499 0.89425 0.93503 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.49 15 2 O -0.33 -6.63 10.49 -19.57 -0.21 -6.84 15 3 C 0.19 4.27 6.67 -39.31 -0.26 4.01 15 4 C -0.29 -7.40 7.19 -38.76 -0.28 -7.67 15 5 C 0.13 3.41 5.15 -106.72 -0.55 2.86 15 6 C -0.49 -13.29 9.06 -37.84 -0.34 -13.63 15 7 H 0.09 2.52 7.88 -52.49 -0.41 2.11 15 8 C 0.04 1.13 5.41 -17.33 -0.09 1.04 15 9 N -0.80 -21.37 13.66 55.55 0.76 -20.61 15 10 Si 1.08 24.67 24.90 -169.99 -4.23 20.43 15 11 H -0.27 -6.07 6.43 56.52 0.36 -5.70 15 12 H -0.26 -6.01 7.03 56.52 0.40 -5.62 15 13 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 14 C -0.07 -1.67 6.75 -38.23 -0.26 -1.93 15 15 O -0.48 -11.58 12.61 -33.85 -0.43 -12.00 15 16 C 0.16 3.80 6.69 -39.21 -0.26 3.54 15 17 O -0.32 -6.52 10.27 -34.52 -0.35 -6.88 15 18 C 0.03 0.48 9.81 101.05 0.99 1.47 15 19 C -0.39 -8.50 8.03 -39.05 -0.31 -8.81 15 20 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 21 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15 22 H 0.05 0.64 7.65 -51.93 -0.40 0.24 15 23 H 0.12 3.00 4.38 -52.48 -0.23 2.77 15 24 H 0.29 7.49 8.73 -40.82 -0.36 7.13 15 25 H 0.35 7.04 9.06 45.56 0.41 7.45 15 26 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 28 H 0.05 0.63 7.66 -51.93 -0.40 0.24 15 29 H 0.11 2.04 4.46 -52.49 -0.23 1.80 15 LS Contribution 248.46 15.07 3.74 3.74 Total: -1.00 -30.46 248.46 -3.19 -33.65 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -2.09 Total: 6.14 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.38 Total: -17.65 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.76 Total: -20.61 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.99 Total: -25.72 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.23 Total: 20.43 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.46 -3.19 -33.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141566556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.360 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds