Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35946 * 116.99966 * 2 1 4 4 C 1.37914 * 119.82807 * 180.30287 * 3 2 1 5 5 C 1.40732 * 119.85175 * 180.25321 * 4 3 2 6 6 C 1.41169 * 120.23851 * 179.71949 * 5 4 3 7 7 H 1.08000 * 120.00335 * 208.63841 * 6 5 4 8 8 C 1.39909 * 119.99352 * 28.63851 * 6 5 4 9 9 N 1.30880 * 119.99447 * 197.84579 * 8 6 5 10 10 Si 1.86790 * 120.00464 * 17.84623 * 8 6 5 11 11 H 1.48498 * 109.47305 * 269.99942 * 10 8 6 12 12 H 1.48502 * 109.47295 * 30.00072 * 10 8 6 13 13 H 1.48501 * 109.47111 * 150.00116 * 10 8 6 14 14 C 1.41202 * 119.52778 * 359.44670 * 5 4 3 15 15 O 1.35792 * 120.17248 * 180.25141 * 14 5 4 16 16 C 1.38858 * 119.65672 * 0.27839 * 14 5 4 17 17 O 1.36004 * 119.93175 * 179.97438 * 16 14 5 18 18 C 1.42898 * 116.99889 * 179.97438 * 17 16 14 19 19 C 1.38623 * 120.13310 * 359.97438 * 16 14 5 20 20 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46928 * 299.99809 * 1 2 3 22 22 H 1.08999 * 109.47407 * 59.99996 * 1 2 3 23 23 H 1.08003 * 120.07785 * 359.97438 * 4 3 2 24 24 H 0.97005 * 120.00607 * 355.44193 * 9 8 6 25 25 H 0.96701 * 113.99598 * 89.99955 * 15 14 5 26 26 H 1.09004 * 109.47132 * 59.99658 * 18 17 16 27 27 H 1.08999 * 109.47378 * 179.97438 * 18 17 16 28 28 H 1.09007 * 109.46945 * 299.99751 * 18 17 16 29 29 H 1.08002 * 119.75508 * 179.97438 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4237 1.2794 -0.0063 5 6 4.0631 2.5330 -0.0009 6 6 5.4726 2.6122 -0.0014 7 1 5.9660 3.4599 0.4505 8 6 6.2302 1.5922 -0.5872 9 7 7.5006 1.4715 -0.2967 10 14 5.4287 0.4029 -1.7840 11 1 4.8922 -0.7636 -1.0380 12 1 4.3196 1.0884 -2.4950 13 1 6.4369 -0.0614 -2.7704 14 6 3.2849 3.7112 -0.0009 15 8 3.8882 4.9277 -0.0009 16 6 1.8993 3.6194 -0.0004 17 8 1.1443 4.7506 0.0001 18 6 -0.2749 4.5833 0.0001 19 6 1.2842 2.3771 -0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 4.0104 0.3726 -0.0108 24 1 7.9326 2.1276 0.2724 25 1 4.0630 5.2800 -0.8843 26 1 -0.5755 4.0300 0.8899 27 1 -0.7561 5.5613 0.0010 28 1 -0.5756 4.0308 -0.8902 29 1 0.2061 2.3128 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141566556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -128.457162 kcal Electronic energy + Delta-G solvation = -15536.102593 eV Core-core repulsion = 12810.034266 eV Total energy + Delta-G solvation = -2726.068327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26559 -39.67198 -38.54110 -36.64193 -35.21404 -31.71141 -30.25591 -28.82643 -27.09889 -26.52239 -23.32331 -22.26004 -20.43990 -19.11766 -18.70741 -17.82606 -17.15325 -16.81115 -16.30904 -15.98815 -15.61249 -15.52423 -15.30143 -14.73351 -14.17233 -13.64790 -13.25026 -13.17244 -12.66832 -12.33908 -12.29338 -12.14791 -11.96185 -11.51350 -11.43520 -11.11189 -10.70754 -9.65176 -9.30804 -8.65456 -6.72308 0.61600 0.71723 1.38673 1.52515 1.76376 2.15193 2.45312 2.46663 2.57433 3.23075 3.79005 4.22218 4.28980 4.37186 4.40546 4.44576 4.50535 4.63532 4.69421 4.74410 4.98022 5.23640 5.36065 5.45631 5.55111 5.66211 6.12565 6.28725 6.42538 6.65594 6.72006 7.26828 7.88914 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.012527 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.197409 B = 2234.686504 C = 3147.501827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.189 3.811 4 C -0.314 4.314 5 C 0.114 3.886 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.017 3.983 9 N -0.826 5.826 10 Si 1.108 2.892 11 H -0.263 1.263 12 H -0.264 1.264 13 H -0.274 1.274 14 C -0.095 4.095 15 O -0.493 6.493 16 C 0.167 3.833 17 O -0.332 6.332 18 C 0.019 3.981 19 C -0.375 4.375 20 H 0.123 0.877 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.282 0.718 25 H 0.368 0.632 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 -0.792 -2.787 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.143 3.857 4 C -0.333 4.333 5 C 0.110 3.890 6 C -0.549 4.549 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.449 5.449 10 Si 0.929 3.071 11 H -0.189 1.189 12 H -0.188 1.188 13 H -0.201 1.201 14 C -0.141 4.141 15 O -0.300 6.300 16 C 0.121 3.879 17 O -0.246 6.246 18 C -0.075 4.075 19 C -0.394 4.394 20 H 0.141 0.859 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.130 0.870 24 H 0.093 0.907 25 H 0.221 0.779 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.266 -2.139 -3.017 14.738 hybrid contribution 0.019 1.774 0.834 1.960 sum -14.247 -0.366 -2.183 14.418 Atomic orbital electron populations 1.23322 0.76712 1.05393 1.02062 1.86035 1.23538 1.26977 1.88650 1.18502 0.91152 0.83994 0.92060 1.20281 0.92109 0.97092 1.23860 1.17629 0.93386 0.90153 0.87786 1.20460 0.91854 1.07650 1.34981 0.92637 1.28360 0.95036 0.98789 0.97675 1.70610 1.12921 1.32132 1.29230 0.83149 0.74671 0.74829 0.74473 1.18853 1.18823 1.20095 1.17922 0.87188 0.85454 1.23527 1.84771 1.80917 1.31782 1.32559 1.18983 0.89511 0.85674 0.93720 1.86085 1.20415 1.29474 1.88616 1.23309 0.77184 1.05067 1.01971 1.20748 1.00198 0.90107 1.28384 0.85883 0.92096 0.91863 0.86951 0.90735 0.77942 0.92273 0.86088 0.91829 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 15 2 O -0.34 -12.58 10.49 -92.94 -0.97 -13.56 15 3 C 0.19 8.22 6.67 22.44 0.15 8.37 15 4 C -0.31 -15.78 7.19 22.80 0.16 -15.62 15 5 C 0.11 6.18 5.15 -21.22 -0.11 6.07 15 6 C -0.52 -29.94 9.06 23.39 0.21 -29.73 15 7 H 0.06 3.43 7.88 -2.91 -0.02 3.40 15 8 C 0.02 0.94 5.41 85.24 0.46 1.40 15 9 N -0.83 -45.94 13.66 21.82 0.30 -45.64 15 10 Si 1.11 50.33 24.90 68.60 1.71 52.04 15 11 H -0.26 -11.43 6.43 99.48 0.64 -10.79 15 12 H -0.26 -11.84 7.03 99.48 0.70 -11.14 15 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 14 C -0.09 -4.83 6.75 23.15 0.16 -4.67 15 15 O -0.49 -24.30 12.61 -77.11 -0.97 -25.27 15 16 C 0.17 7.37 6.69 22.51 0.15 7.52 15 17 O -0.33 -12.64 10.27 -79.48 -0.82 -13.45 15 18 C 0.02 0.46 9.81 113.37 1.11 1.58 15 19 C -0.37 -14.75 8.03 22.61 0.18 -14.57 15 20 H 0.12 2.10 8.14 -2.38 -0.02 2.08 15 21 H 0.06 1.31 7.65 -2.39 -0.02 1.29 15 22 H 0.06 1.33 7.65 -2.39 -0.02 1.31 15 23 H 0.11 5.70 4.38 -2.91 -0.01 5.69 15 24 H 0.28 15.52 8.73 -92.70 -0.81 14.71 15 25 H 0.37 15.07 9.06 -74.06 -0.67 14.40 15 26 H 0.06 1.33 7.65 -2.39 -0.02 1.31 15 27 H 0.12 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.06 1.37 7.66 -2.38 -0.02 1.35 15 29 H 0.15 4.67 4.46 -2.91 -0.01 4.66 15 Total: -1.00 -67.69 248.46 3.24 -64.45 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.41 Total: 19.52 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.59 Total: -38.09 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.30 Total: -45.64 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -2.76 Total: -52.28 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.71 Total: 52.04 kcal Total: -67.69 3.24 -64.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141566556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.006 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds