Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86798 * 120.00312 * 2 1 4 4 H 1.48504 * 109.47324 * 275.00565 * 3 2 1 5 5 H 1.48505 * 109.47181 * 35.00279 * 3 2 1 6 6 H 1.48497 * 109.47464 * 155.00017 * 3 2 1 7 7 C 1.40154 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00222 * 174.97404 * 7 2 1 9 9 C 1.41623 * 119.99270 * 354.69438 * 7 2 1 10 10 O 1.21802 * 120.00667 * 5.02424 * 9 7 2 11 11 N 1.34783 * 119.99388 * 185.02384 * 9 7 2 12 12 C 1.39435 * 119.99611 * 174.48034 * 11 9 7 13 13 C 1.38965 * 120.10751 * 335.12254 * 12 11 9 14 14 C 1.38037 * 120.01333 * 179.97438 * 13 12 11 15 15 C 1.38741 * 120.22244 * 359.97438 * 14 13 12 16 16 F 1.35103 * 119.89856 * 180.02562 * 15 14 13 17 17 C 1.38388 * 120.20723 * 0.04055 * 15 14 13 18 18 C 1.38722 * 119.98764 * 359.70336 * 17 15 14 19 19 N 1.39564 * 120.11129 * 180.29933 * 18 17 15 20 20 H 0.97005 * 120.00027 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00292 * 354.48214 * 11 9 7 22 22 H 1.08005 * 119.99354 * 0.02562 * 13 12 11 23 23 H 1.08001 * 119.89122 * 180.02562 * 14 13 12 24 24 H 1.07998 * 120.00557 * 180.02562 * 17 15 14 25 25 H 0.97003 * 120.00246 * 180.22600 * 19 18 17 26 26 H 0.96996 * 119.99911 * 0.22967 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3821 2.1075 -1.3947 5 1 1.4947 2.6198 0.8031 6 1 3.5867 1.4119 0.5917 7 6 2.0070 -1.2137 -0.0005 8 1 3.0839 -1.2155 -0.0825 9 6 1.3033 -2.4376 0.1123 10 8 0.0853 -2.4417 0.1177 11 7 1.9816 -3.5979 0.2138 12 6 1.2941 -4.7897 0.4404 13 6 0.0505 -4.7701 1.0601 14 6 -0.6286 -5.9510 1.2829 15 6 -0.0741 -7.1604 0.8896 16 9 -0.7447 -8.3123 1.1104 17 6 1.1639 -7.1906 0.2719 18 6 1.8516 -6.0086 0.0389 19 7 3.0975 -6.0355 -0.5894 20 1 -0.4850 0.8401 0.0004 21 1 2.9478 -3.6039 0.1293 22 1 -0.3852 -3.8306 1.3667 23 1 -1.5952 -5.9334 1.7644 24 1 1.5924 -8.1338 -0.0333 25 1 3.5785 -5.2083 -0.7486 26 1 3.4825 -6.8814 -0.8669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169807469.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = -78.999164 kcal Electronic energy + Delta-G solvation = -14704.592117 eV Core-core repulsion = 11889.500896 eV Total energy + Delta-G solvation = -2815.091221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.71953 -40.99536 -38.81033 -35.46192 -35.11784 -34.26794 -30.74481 -29.59631 -27.98686 -24.21815 -23.14059 -21.69085 -19.78833 -18.66417 -18.07504 -17.82752 -17.28790 -16.44544 -16.14603 -16.12959 -15.70299 -15.08172 -14.76792 -14.47413 -13.78185 -13.69821 -13.56873 -13.10121 -12.78346 -12.68950 -12.22863 -12.00642 -11.47784 -11.06678 -10.77149 -9.80376 -9.16821 -8.37368 -8.08328 -6.97944 0.37766 0.56326 1.40523 1.41747 1.58289 2.21467 2.36096 2.79572 2.82897 3.03983 3.57734 3.67424 3.94691 4.20326 4.52830 4.71950 4.87468 5.16906 5.22760 5.37130 5.49615 5.88205 5.92180 6.17277 6.23085 6.61891 6.75338 7.00384 7.40965 8.39827 8.58138 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.052865 B = 0.006923 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.522981 B = 4043.256793 C = 4510.358426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.611 6.611 11 N -0.685 5.685 12 C 0.085 3.915 13 C -0.099 4.099 14 C -0.192 4.192 15 C 0.093 3.907 16 F -0.146 7.146 17 C -0.208 4.208 18 C 0.201 3.799 19 N -0.859 5.859 20 H 0.279 0.721 21 H 0.402 0.598 22 H 0.120 0.880 23 H 0.134 0.866 24 H 0.162 0.838 25 H 0.402 0.598 26 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -8.561 -0.042 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.185 4.185 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.110 0.890 9 C 0.338 3.662 10 O -0.499 6.499 11 N -0.329 5.329 12 C -0.016 4.016 13 C -0.121 4.121 14 C -0.213 4.213 15 C 0.072 3.928 16 F -0.125 7.125 17 C -0.232 4.232 18 C 0.092 3.908 19 N -0.401 5.401 20 H 0.089 0.911 21 H 0.237 0.763 22 H 0.138 0.862 23 H 0.152 0.848 24 H 0.179 0.821 25 H 0.231 0.769 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.614 -8.433 -0.023 10.718 hybrid contribution 0.507 0.610 -0.126 0.803 sum 7.121 -7.824 -0.150 10.581 Atomic orbital electron populations 1.70158 1.09699 1.29487 1.33495 1.27000 0.95443 1.05104 0.90984 0.84963 0.78995 0.74844 0.79284 1.18627 1.19803 1.16995 1.20549 0.95871 0.90659 1.52900 0.88990 1.17364 0.87267 0.83676 0.77854 1.90580 1.15491 1.86601 1.57181 1.43390 1.09702 1.05014 1.74823 1.17806 0.95549 0.86012 1.02205 1.21061 0.94907 0.98345 0.97780 1.20849 1.02381 0.90658 1.07416 1.17315 0.92084 0.80900 1.02486 1.91426 1.80147 1.47746 1.93185 1.20344 0.95596 0.98113 1.09151 1.17201 0.88647 0.90881 0.94025 1.42067 1.18009 1.12438 1.67633 0.91097 0.76295 0.86209 0.84815 0.82072 0.76880 0.75478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.70 11.75 21.85 0.26 -46.44 15 2 C 0.03 1.75 5.49 85.34 0.47 2.22 15 3 Si 1.00 38.45 29.56 68.60 2.03 40.48 15 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 15 7 C -0.56 -30.17 9.30 23.57 0.22 -29.95 15 8 H 0.09 4.30 7.85 -2.91 -0.02 4.28 15 9 C 0.53 29.45 7.36 85.08 0.63 30.08 15 10 O -0.61 -39.10 12.05 -4.67 -0.06 -39.16 15 11 N -0.68 -30.08 5.16 -310.96 -1.61 -31.68 15 12 C 0.09 3.56 6.45 38.51 0.25 3.81 15 13 C -0.10 -4.46 8.71 22.40 0.19 -4.27 15 14 C -0.19 -7.35 10.02 22.34 0.22 -7.13 15 15 C 0.09 3.16 7.30 22.43 0.16 3.32 15 16 F -0.15 -4.66 17.26 44.97 0.78 -3.89 15 17 C -0.21 -6.19 9.86 22.42 0.22 -5.97 15 18 C 0.20 6.46 6.78 38.43 0.26 6.72 15 19 N -0.86 -19.69 9.05 -50.93 -0.46 -20.16 15 20 H 0.28 14.67 8.29 -92.70 -0.77 13.90 15 21 H 0.40 14.43 7.30 -92.71 -0.68 13.76 15 22 H 0.12 6.43 5.78 -2.91 -0.02 6.41 15 23 H 0.13 4.68 8.06 -2.91 -0.02 4.66 15 24 H 0.16 3.61 8.06 -2.91 -0.02 3.58 15 25 H 0.40 8.80 7.26 -92.71 -0.67 8.13 15 26 H 0.41 6.63 8.84 -92.71 -0.82 5.81 15 Total: -1.00 -70.64 238.87 2.66 -67.98 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.90 Total: 34.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 2.63 Total: -1.17 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -1.81 Total: -98.28 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.06 Total: -39.16 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -70.64 2.66 -67.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169807469.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.016 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds