Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31085 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48502 * 109.47433 * 274.98193 * 3 2 1 5 5 H 1.48501 * 109.46924 * 34.98513 * 3 2 1 6 6 H 1.48504 * 109.46953 * 154.98045 * 3 2 1 7 7 C 1.39596 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00041 * 173.97427 * 7 2 1 9 9 C 1.41110 * 119.99869 * 354.23662 * 7 2 1 10 10 C 1.39390 * 126.33306 * 185.32887 * 9 7 2 11 11 N 1.36350 * 106.30227 * 180.15919 * 10 9 7 12 12 C 1.35635 * 107.62844 * 359.58564 * 11 10 9 13 13 N 1.30490 * 110.19743 * 0.26833 * 12 11 10 14 14 S 1.78263 * 123.28806 * 180.80460 * 12 11 10 15 15 C 1.81855 * 97.78558 * 296.04202 * 14 12 11 16 16 C 1.51407 * 109.59791 * 77.20875 * 15 14 12 17 17 C 1.49765 * 118.40584 * 283.55354 * 16 15 14 18 18 C 1.47554 * 125.97836 * 179.18417 * 11 10 9 19 19 H 0.96997 * 120.00459 * 359.97438 * 1 2 3 20 20 H 1.07998 * 126.84784 * 0.13456 * 10 9 7 21 21 H 1.08993 * 109.44868 * 317.16554 * 15 14 12 22 22 H 1.09001 * 109.44623 * 197.24888 * 15 14 12 23 23 H 1.09005 * 107.64615 * 161.29387 * 16 15 14 24 24 H 1.09002 * 107.61803 * 45.80053 * 16 15 14 25 25 H 1.08993 * 109.08380 * 315.45388 * 17 16 15 26 26 H 1.09005 * 109.07863 * 196.47883 * 17 16 15 27 27 H 1.08997 * 109.82436 * 10.23251 * 18 11 10 28 28 H 1.09006 * 109.82081 * 131.09232 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.3870 2.1073 -1.3948 5 1 1.4988 2.6199 0.8028 6 1 3.5911 1.4121 0.5922 7 6 2.0089 -1.2089 -0.0005 8 1 3.0844 -1.2114 -0.0987 9 6 1.3087 -2.4279 0.1216 10 6 1.8737 -3.6966 0.2405 11 7 0.8326 -4.5727 0.3281 12 6 -0.3157 -3.8528 0.2732 13 7 -0.0454 -2.5821 0.1510 14 16 -1.9367 -4.5875 0.3741 15 6 -1.8578 -5.5693 -1.1547 16 6 -1.0148 -6.8052 -0.9215 17 6 0.4747 -6.6542 -0.8799 18 6 0.9416 -6.0391 0.4505 19 1 -0.4851 0.8400 0.0004 20 1 2.9263 -3.9376 0.2591 21 1 -1.4117 -4.9700 -1.9482 22 1 -2.8648 -5.8666 -1.4474 23 1 -1.2525 -7.5207 -1.7087 24 1 -1.3291 -7.2452 0.0249 25 1 0.7906 -6.0100 -1.7004 26 1 0.9357 -7.6346 -1.0002 27 1 1.9775 -6.3179 0.6434 28 1 0.3068 -6.3902 1.2641 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214743867.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = 53.268761 kcal Electronic energy + Delta-G solvation = -13302.318407 eV Core-core repulsion = 11059.175930 eV Total energy + Delta-G solvation = -2243.142477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04209 -35.99982 -33.23643 -31.67185 -28.62743 -28.38559 -25.23960 -23.77187 -21.09443 -19.97514 -19.49428 -17.05881 -16.14202 -15.31115 -14.96329 -14.44068 -14.06961 -13.77679 -13.29262 -12.71556 -12.51338 -12.13433 -11.89719 -11.34806 -11.05646 -10.93047 -10.89876 -10.68284 -10.29413 -9.92361 -9.79179 -9.10477 -8.14429 -8.05529 -7.47271 -6.85762 -6.18391 -3.99989 2.20425 2.70405 3.16156 3.28258 3.32150 3.52700 4.04939 4.26345 4.59709 4.74894 4.95125 5.03420 5.38325 5.57193 5.61836 5.78990 5.89190 5.90819 5.95920 6.07533 6.29784 6.39599 7.10153 7.46988 7.69376 7.76954 8.34093 8.62491 9.10606 9.28820 9.88061 10.75713 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.048758 B = 0.008399 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.127984 B = 3333.006631 C = 3712.580850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.456 4.456 8 H 0.076 0.924 9 C 0.193 3.807 10 C -0.202 4.202 11 N -0.450 5.450 12 C 0.144 3.856 13 N -0.412 5.412 14 S -0.073 6.073 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.112 3.888 19 H 0.267 0.733 20 H 0.147 0.853 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 -11.685 -1.402 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.066 3.934 10 C -0.333 4.333 11 N -0.143 5.143 12 C -0.223 4.223 13 N -0.137 5.137 14 S 0.156 5.844 15 C -0.258 4.258 16 C -0.155 4.155 17 C -0.173 4.173 18 C -0.012 4.012 19 H 0.078 0.922 20 H 0.164 0.836 21 H 0.105 0.895 22 H 0.121 0.879 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.818 -10.964 -0.630 11.337 hybrid contribution 2.090 0.042 -0.870 2.264 sum -0.728 -10.922 -1.499 11.048 Atomic orbital electron populations 1.70135 1.06608 1.27057 1.35882 1.25756 0.94736 1.00190 0.93658 0.86444 0.80360 0.82070 0.78478 1.20083 1.20585 1.19014 1.18399 0.93677 0.88478 1.48548 0.90573 1.18720 0.87276 0.91369 0.96059 1.22731 0.91377 0.90190 1.28979 1.45288 1.06275 1.05142 1.57604 1.24479 0.89438 0.91491 1.16855 1.71782 1.15130 1.09551 1.17203 1.85670 1.14158 1.54930 1.29633 1.23359 1.03424 0.99065 0.99977 1.20817 0.94917 0.97065 1.02714 1.21515 0.95895 1.01420 0.98514 1.22051 1.02168 0.79465 0.97540 0.92243 0.83575 0.89463 0.87906 0.91958 0.91383 0.91120 0.90506 0.89798 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.84 11.95 55.53 0.66 -22.17 15 2 C 0.08 2.11 5.48 -17.36 -0.10 2.01 15 3 Si 0.90 20.50 29.56 -169.99 -5.03 15.47 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.46 -13.19 9.36 -37.99 -0.36 -13.55 15 8 H 0.08 2.07 7.85 -52.48 -0.41 1.65 15 9 C 0.19 5.60 6.68 -84.36 -0.56 5.03 15 10 C -0.20 -5.00 11.63 -15.11 -0.18 -5.18 15 11 N -0.45 -9.91 2.72 -114.26 -0.31 -10.22 15 12 C 0.14 3.55 7.44 -89.84 -0.67 2.88 15 13 N -0.41 -12.07 9.58 -10.53 -0.10 -12.17 15 14 S -0.07 -1.43 22.13 -107.50 -2.38 -3.81 15 15 C -0.11 -1.65 6.10 36.35 0.22 -1.43 15 16 C -0.12 -1.45 4.92 -29.14 -0.14 -1.59 15 17 C -0.14 -1.81 5.69 -27.90 -0.16 -1.96 15 18 C 0.11 1.76 6.34 -3.03 -0.02 1.74 15 19 H 0.27 7.28 8.30 -40.82 -0.34 6.94 15 20 H 0.15 3.22 8.06 -52.49 -0.42 2.80 15 21 H 0.09 1.49 8.07 -51.93 -0.42 1.07 15 22 H 0.10 1.27 8.14 -51.93 -0.42 0.84 15 23 H 0.06 0.63 8.13 -51.93 -0.42 0.21 15 24 H 0.07 0.80 7.63 -51.93 -0.40 0.41 15 25 H 0.07 1.11 8.05 -51.93 -0.42 0.70 15 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.08 1.16 8.10 -51.93 -0.42 0.74 15 28 H 0.08 1.20 7.76 -51.93 -0.40 0.79 15 LS Contribution 249.15 15.07 3.75 3.75 Total: -1.00 -33.14 249.15 -8.65 -41.79 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.29 Total: -0.60 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.96 Total: -12.05 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.25 Total: -44.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.38 Total: -3.81 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.14 -8.65 -41.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214743867.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.057 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds