Wall clock time and date at job start Mon Mar 30 2020 02:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48499 * 109.47321 * 239.99676 * 3 2 1 5 5 H 1.48499 * 109.46869 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47348 * 119.99224 * 3 2 1 7 7 C 1.37875 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00464 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47634 * 59.99186 * 9 7 2 11 11 O 1.42908 * 109.46963 * 299.99545 * 9 7 2 12 12 C 1.52998 * 109.47590 * 179.97438 * 9 7 2 13 13 O 1.42905 * 109.47333 * 184.99817 * 12 9 7 14 14 C 1.35890 * 116.99780 * 180.02562 * 13 12 9 15 15 C 1.38800 * 120.03229 * 0.02562 * 14 13 12 16 16 C 1.38155 * 120.05539 * 179.97438 * 15 14 13 17 17 C 1.38203 * 120.11089 * 359.74434 * 16 15 14 18 18 C 1.38750 * 120.04957 * 0.51323 * 17 16 15 19 19 O 1.35905 * 120.02471 * 179.77025 * 18 17 16 20 20 C 1.38616 * 120.02565 * 179.97438 * 14 13 12 21 21 H 0.97004 * 120.00036 * 0.02562 * 1 2 3 22 22 H 0.96697 * 113.99354 * 300.00034 * 11 9 7 23 23 H 1.09002 * 109.46845 * 65.00073 * 12 9 7 24 24 H 1.09001 * 109.47176 * 304.99755 * 12 9 7 25 25 H 1.07993 * 119.96920 * 0.02562 * 15 14 13 26 26 H 1.07994 * 119.94079 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.97409 * 180.25537 * 17 16 15 28 28 H 0.96705 * 113.99576 * 269.71952 * 19 18 17 29 29 H 1.08003 * 120.05369 * 0.04309 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8896 11 8 0.4291 -2.5746 1.1671 12 6 2.2452 -3.6621 0.0005 13 8 1.5345 -4.8963 -0.1168 14 6 2.2752 -6.0356 -0.1318 15 6 3.6580 -5.9664 -0.0349 16 6 4.4114 -7.1244 -0.0495 17 6 3.7903 -8.3544 -0.1553 18 6 2.4085 -8.4285 -0.2579 19 8 1.7985 -9.6380 -0.3666 20 6 1.6501 -7.2678 -0.2428 21 1 -0.4850 0.8401 -0.0004 22 1 0.9210 -2.5291 1.9984 23 1 2.8114 -3.6560 0.9320 24 1 2.9293 -3.5553 -0.8413 25 1 4.1454 -5.0067 0.0529 26 1 5.4872 -7.0685 0.0264 27 1 4.3811 -9.2584 -0.1624 28 1 1.6809 -9.9387 -1.2782 29 1 0.5742 -7.3237 -0.3182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259749036.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:23 Heat of formation + Delta-G solvation = -111.470139 kcal Electronic energy + Delta-G solvation = -14709.445931 eV Core-core repulsion = 11984.114217 eV Total energy + Delta-G solvation = -2725.331714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98766 -38.25080 -36.14299 -35.19217 -32.23644 -30.64314 -29.24877 -28.59488 -25.19227 -22.70521 -22.11428 -20.70555 -18.72630 -17.17961 -16.60870 -15.95135 -15.71865 -15.48206 -14.76377 -14.65154 -14.41075 -13.63476 -13.20925 -13.02915 -12.58648 -11.96473 -11.77207 -11.41487 -11.12751 -10.98098 -10.88778 -10.54211 -10.39707 -10.17048 -9.15218 -8.71188 -8.69917 -8.33759 -7.96118 -6.13206 -4.34422 1.30233 1.54938 3.22611 3.27884 3.28901 3.58658 3.78177 4.27674 4.41380 4.94081 5.14322 5.20436 5.26784 5.52990 5.61977 5.81505 5.86015 6.00260 6.22432 6.39003 6.47964 6.50888 6.55477 6.72273 7.53007 7.61329 7.67666 7.87130 7.99601 8.68228 9.27857 9.44085 10.91424 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.060762 B = 0.005434 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.702599 B = 5151.544319 C = 5507.299452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.082 3.918 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.579 4.579 8 H 0.059 0.941 9 C 0.236 3.764 10 H 0.067 0.933 11 O -0.558 6.558 12 C 0.033 3.967 13 O -0.303 6.303 14 C 0.160 3.840 15 C -0.222 4.222 16 C -0.065 4.065 17 C -0.197 4.197 18 C 0.139 3.861 19 O -0.499 6.499 20 C -0.189 4.189 21 H 0.264 0.736 22 H 0.346 0.654 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.390 0.610 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -12.776 -1.547 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.617 4.617 8 H 0.077 0.923 9 C 0.178 3.822 10 H 0.084 0.916 11 O -0.360 6.360 12 C -0.042 4.042 13 O -0.216 6.216 14 C 0.112 3.888 15 C -0.241 4.241 16 C -0.083 4.083 17 C -0.216 4.216 18 C 0.095 3.905 19 O -0.309 6.309 20 C -0.208 4.208 21 H 0.074 0.926 22 H 0.189 0.811 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.246 0.754 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.264 -12.637 -1.410 14.175 hybrid contribution 1.248 0.996 -0.137 1.602 sum 7.512 -11.642 -1.547 13.941 Atomic orbital electron populations 1.70076 1.06017 1.26976 1.45770 1.25021 0.94773 0.99301 0.93498 0.86605 0.79625 0.82594 0.78803 1.19995 1.21004 1.19989 1.21377 0.93173 0.90684 1.56420 0.92299 1.19459 0.88150 0.87447 0.87157 0.91578 1.86615 1.38050 1.96153 1.15170 1.24222 0.97879 0.81961 1.00151 1.86266 1.36136 1.13011 1.86143 1.19027 0.89959 0.87456 0.92341 1.21414 0.93181 1.00013 1.09505 1.20771 0.99562 0.91411 0.96544 1.21179 0.93660 0.98254 1.08520 1.18078 0.89987 0.83939 0.98537 1.84799 1.80754 1.33102 1.32286 1.20648 1.01113 0.89513 1.09531 0.92589 0.81072 0.92850 0.92234 0.85012 0.85643 0.85791 0.75436 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.91 12.84 55.43 0.71 -24.20 15 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 15 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.58 -15.47 8.76 -34.45 -0.30 -15.77 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 9 C 0.24 6.00 3.10 -27.89 -0.09 5.92 15 10 H 0.07 1.86 8.14 -51.93 -0.42 1.44 15 11 O -0.56 -14.64 12.70 -40.06 -0.51 -15.15 15 12 C 0.03 0.68 4.31 37.16 0.16 0.84 15 13 O -0.30 -6.26 10.10 -24.22 -0.24 -6.50 15 14 C 0.16 2.80 6.68 -39.23 -0.26 2.54 15 15 C -0.22 -3.40 9.04 -39.40 -0.36 -3.76 15 16 C -0.06 -0.83 10.04 -39.62 -0.40 -1.23 15 17 C -0.20 -2.49 9.98 -39.41 -0.39 -2.88 15 18 C 0.14 1.91 6.70 -39.24 -0.26 1.65 15 19 O -0.50 -5.87 13.50 -19.44 -0.26 -6.13 15 20 C -0.19 -3.00 9.93 -39.29 -0.39 -3.39 15 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 22 H 0.35 7.92 9.04 45.56 0.41 8.34 15 23 H 0.05 1.03 7.66 -51.93 -0.40 0.63 15 24 H 0.06 1.16 7.66 -51.93 -0.40 0.76 15 25 H 0.13 1.93 6.29 -52.49 -0.33 1.60 15 26 H 0.13 1.25 8.06 -52.49 -0.42 0.82 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 28 H 0.39 2.54 9.06 45.56 0.41 2.96 15 29 H 0.13 2.08 8.06 -52.48 -0.42 1.66 15 LS Contribution 262.02 15.07 3.95 3.95 Total: -1.00 -31.70 262.02 -5.30 -37.00 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -1.53 Total: 9.43 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.39 Total: -13.95 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.71 Total: -24.20 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.02 Total: -27.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.70 -5.30 -37.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749036.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.474 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds