Wall clock time and date at job start Mon Mar 30 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99718 * 2 1 4 4 H 1.48504 * 109.46888 * 269.99264 * 3 2 1 5 5 H 1.48489 * 109.47492 * 29.99512 * 3 2 1 6 6 H 1.48498 * 109.46931 * 150.00146 * 3 2 1 7 7 C 1.37868 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46951 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.75293 * 51.83569 * 10 9 7 12 12 C 1.54919 * 110.69352 * 175.00173 * 10 9 7 13 13 O 1.44789 * 101.75548 * 153.94428 * 12 10 9 14 14 C 1.43798 * 104.79238 * 323.94808 * 13 12 10 15 15 H 1.09003 * 109.47265 * 264.46034 * 14 13 12 16 16 C 1.50696 * 109.64607 * 144.16033 * 14 13 12 17 17 C 1.34509 * 125.79287 * 60.32171 * 16 14 13 18 18 C 1.41388 * 106.84146 * 179.88846 * 17 16 14 19 19 C 1.34518 * 106.83910 * 0.36766 * 18 17 16 20 20 O 1.34304 * 108.41934 * 359.77480 * 19 18 17 21 21 O 1.43363 * 108.80860 * 24.25520 * 14 13 12 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46614 * 60.00712 * 9 7 2 24 24 H 1.08994 * 109.47718 * 300.00034 * 9 7 2 25 25 H 1.09002 * 110.97986 * 272.07150 * 12 10 9 26 26 H 1.08997 * 110.97787 * 35.81710 * 12 10 9 27 27 H 1.08000 * 126.58285 * 0.02562 * 17 16 14 28 28 H 1.07998 * 126.57689 * 180.16372 * 18 17 16 29 29 H 1.07998 * 125.78882 * 179.75202 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9757 -3.5459 0.8022 12 6 1.5039 -5.0162 0.1289 13 8 2.4359 -5.9238 -0.5069 14 6 3.0084 -5.1655 -1.5862 15 1 2.4660 -5.3782 -2.5075 16 6 4.4585 -5.5393 -1.7547 17 6 4.9259 -6.7670 -2.0439 18 6 6.3344 -6.6637 -2.1114 19 6 6.6439 -5.3807 -1.8513 20 8 5.5037 -4.7044 -1.6361 21 8 2.9036 -3.7695 -1.2769 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5574 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 1.3531 -5.2816 1.1753 26 1 0.5548 -4.9933 -0.4065 27 1 4.3380 -7.6599 -2.1975 28 1 7.0286 -7.4624 -2.3268 29 1 7.6402 -4.9652 -1.8204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259985458.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:32 Heat of formation + Delta-G solvation = -94.748348 kcal Electronic energy + Delta-G solvation = -15188.262847 eV Core-core repulsion = 12463.656244 eV Total energy + Delta-G solvation = -2724.606603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.54427 -41.28027 -36.34732 -35.28098 -34.01727 -33.08487 -30.95825 -28.51159 -25.87320 -25.11023 -22.76289 -22.38300 -21.55420 -19.01195 -18.48548 -18.08864 -17.52292 -17.06154 -16.58615 -16.17728 -15.73238 -15.02110 -14.39525 -14.19498 -13.91733 -13.75314 -13.70624 -13.47574 -13.21241 -13.13754 -12.52826 -12.37671 -11.78502 -11.31743 -11.13826 -10.90496 -10.75423 -10.60384 -9.53456 -8.22894 -6.31573 0.66713 1.38808 1.40190 1.51280 1.62996 1.86346 2.40007 2.61047 3.03305 3.12534 3.63179 3.76845 4.01831 4.10466 4.14303 4.19372 4.25570 4.59618 4.69473 4.80475 4.94894 4.97949 5.09582 5.30206 5.49304 5.58350 5.73328 5.99843 6.18473 6.26960 6.79104 7.35979 8.88638 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.007174 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.661181 B = 3901.863142 C = 4550.511454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.030 3.970 10 C 0.063 3.937 11 H 0.067 0.933 12 C 0.028 3.972 13 O -0.379 6.379 14 C 0.305 3.695 15 H 0.127 0.873 16 C -0.066 4.066 17 C -0.184 4.184 18 C -0.222 4.222 19 C -0.042 4.042 20 O -0.189 6.189 21 O -0.386 6.386 22 H 0.265 0.735 23 H 0.007 0.993 24 H 0.030 0.970 25 H 0.135 0.865 26 H 0.091 0.909 27 H 0.168 0.832 28 H 0.183 0.817 29 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -12.945 -2.703 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.067 0.933 9 C -0.007 4.007 10 C 0.006 3.994 11 H 0.085 0.915 12 C -0.047 4.047 13 O -0.300 6.300 14 C 0.209 3.791 15 H 0.143 0.857 16 C -0.116 4.116 17 C -0.203 4.203 18 C -0.240 4.240 19 C -0.109 4.109 20 O -0.085 6.085 21 O -0.307 6.307 22 H 0.074 0.926 23 H 0.025 0.975 24 H 0.048 0.952 25 H 0.153 0.847 26 H 0.109 0.891 27 H 0.185 0.815 28 H 0.200 0.800 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.969 -12.578 -2.696 15.681 hybrid contribution 0.185 0.866 -0.025 0.886 sum 9.154 -11.712 -2.721 15.111 Atomic orbital electron populations 1.70045 1.07364 1.27888 1.51528 1.25834 0.95804 1.02922 0.94697 0.85504 0.78699 0.78830 0.78372 1.20159 1.20110 1.19225 1.21453 0.93068 0.92257 1.50638 0.93331 1.19102 0.93263 0.91476 0.96891 1.23953 0.94276 0.96778 0.84363 0.91535 1.24679 0.92964 0.85821 1.01272 1.89163 1.57720 1.36481 1.46599 1.22367 0.86327 0.77649 0.92740 0.85659 1.22805 0.89220 0.90508 1.09078 1.21886 0.95981 0.97018 1.05418 1.22227 0.95336 0.98192 1.08282 1.25044 0.90082 0.92445 1.03364 1.84121 1.15105 1.39926 1.69355 1.89030 1.80658 1.22537 1.38512 0.92571 0.97497 0.95178 0.84709 0.89134 0.81470 0.80016 0.74491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.44 0.28 -55.44 15 2 C 0.01 0.32 5.46 84.65 0.46 0.79 15 3 Si 0.96 45.26 29.54 68.60 2.03 47.29 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 7 C -0.54 -31.28 9.04 25.60 0.23 -31.04 15 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 15 9 C 0.03 1.54 4.73 29.85 0.14 1.68 15 10 C 0.06 2.72 3.58 31.25 0.11 2.83 15 11 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 12 C 0.03 0.93 7.40 72.64 0.54 1.47 15 13 O -0.38 -12.83 11.33 -126.22 -1.43 -14.26 15 14 C 0.30 10.91 4.47 71.23 0.32 11.23 15 15 H 0.13 3.88 8.14 -2.39 -0.02 3.86 15 16 C -0.07 -2.24 6.73 24.83 0.17 -2.08 15 17 C -0.18 -5.00 10.80 22.19 0.24 -4.76 15 18 C -0.22 -5.01 10.91 22.19 0.24 -4.77 15 19 C -0.04 -1.04 12.09 66.97 0.81 -0.23 15 20 O -0.19 -6.69 10.43 9.48 0.10 -6.59 15 21 O -0.39 -17.41 10.67 -121.20 -1.29 -18.70 15 22 H 0.27 14.95 8.31 -92.71 -0.77 14.18 15 23 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.14 3.66 8.14 -2.39 -0.02 3.64 15 26 H 0.09 2.80 8.04 -2.39 -0.02 2.78 15 27 H 0.17 3.74 8.06 -2.91 -0.02 3.71 15 28 H 0.18 2.72 8.06 -2.91 -0.02 2.69 15 29 H 0.24 3.58 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -69.89 260.77 4.09 -65.80 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.14 Total: 6.78 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.26 Total: -24.88 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -2.62 Total: -39.55 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.89 4.09 -65.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985458.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.951 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds