Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 112.84488 * 2 1 4 4 N 1.30072 * 125.42904 * 170.30733 * 3 2 1 5 5 N 1.26277 * 117.85115 * 180.02562 * 4 3 2 6 6 C 1.32113 * 115.91124 * 359.97438 * 5 4 3 7 7 C 1.40067 * 126.21211 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00027 * 185.74627 * 7 6 5 9 9 C 1.40251 * 119.99675 * 5.46755 * 7 6 5 10 10 N 1.30690 * 120.00126 * 354.27042 * 9 7 6 11 11 Si 1.86809 * 119.99813 * 174.27278 * 9 7 6 12 12 H 1.48505 * 109.46883 * 94.98378 * 11 9 7 13 13 H 1.48500 * 109.46935 * 214.97826 * 11 9 7 14 14 H 1.48500 * 109.47030 * 334.98173 * 11 9 7 15 15 S 1.71233 * 125.43461 * 350.62603 * 3 2 1 16 16 C 1.53778 * 113.61566 * 131.19712 * 2 1 3 17 17 C 1.53953 * 87.02156 * 89.23029 * 16 2 1 18 18 C 1.53780 * 113.61530 * 228.80848 * 2 1 3 19 19 H 1.09000 * 109.47102 * 69.67255 * 1 2 3 20 20 H 1.09004 * 109.46742 * 189.66386 * 1 2 3 21 21 H 1.09001 * 109.47645 * 309.66173 * 1 2 3 22 22 H 0.97009 * 119.99882 * 180.02562 * 10 9 7 23 23 H 1.08995 * 113.61452 * 203.75674 * 16 2 1 24 24 H 1.09007 * 113.61534 * 334.65196 * 16 2 1 25 25 H 1.09002 * 113.53823 * 270.81500 * 17 16 2 26 26 H 1.08996 * 113.74397 * 139.94061 * 17 16 2 27 27 H 1.08995 * 113.61715 * 25.33887 * 18 2 1 28 28 H 1.09001 * 113.61418 * 156.16421 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 7 3.3707 1.6781 0.1784 5 7 3.7053 2.8954 0.1509 6 6 2.7274 3.7583 -0.0603 7 6 2.8542 5.1514 -0.1317 8 1 1.9731 5.7701 -0.2166 9 6 4.1250 5.7430 -0.0871 10 7 5.1816 5.0061 0.1332 11 14 4.3074 7.5846 -0.3426 12 1 4.3327 8.2671 0.9760 13 1 5.5738 7.8607 -1.0673 14 1 3.1607 8.0897 -1.1396 15 16 1.2320 2.8381 -0.2272 16 6 2.1461 -0.9280 1.0602 17 6 2.0951 -2.0420 -0.0013 18 6 2.1461 -0.9279 -1.0603 19 1 -0.3633 0.3570 -0.9637 20 1 -0.3633 -1.0131 0.1725 21 1 -0.3634 0.6559 0.7911 22 1 6.0605 5.4154 0.1644 23 1 3.1585 -0.6476 1.3507 24 1 1.4940 -1.1080 1.9150 25 1 1.1596 -2.6013 -0.0007 26 1 2.9739 -2.6868 -0.0033 27 1 1.4940 -1.1079 -1.9149 28 1 3.1580 -0.6467 -1.3518 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260327988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = 33.191513 kcal Electronic energy + Delta-G solvation = -13055.698020 eV Core-core repulsion = 10811.684928 eV Total energy + Delta-G solvation = -2244.013092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01562 -39.66253 -35.96899 -32.05908 -30.60533 -28.67705 -26.53409 -25.67983 -23.92391 -21.83562 -19.68476 -19.09845 -18.24957 -17.01585 -16.51228 -15.75697 -15.64434 -14.79638 -14.45422 -13.88263 -13.56733 -13.40925 -13.24069 -13.10166 -12.96386 -12.80245 -12.22559 -12.06620 -11.55266 -11.54199 -11.34813 -11.14990 -10.46544 -10.09066 -10.07027 -9.83612 -8.77773 -6.87184 0.47040 0.96865 1.37001 1.38780 1.48808 1.58712 2.13256 2.36944 3.07119 3.65002 3.81021 3.92382 4.00823 4.08725 4.66251 4.71470 4.82100 4.85056 4.94135 4.96011 5.06857 5.09546 5.17146 5.20940 5.35223 5.48502 5.72486 5.93390 6.08275 6.38726 8.10293 8.81802 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.062809 B = 0.007502 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.692310 B = 3731.385100 C = 4029.078249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.003 3.997 3 C -0.106 4.106 4 N -0.274 5.274 5 N -0.393 5.393 6 C 0.133 3.867 7 C -0.393 4.393 8 H 0.115 0.885 9 C 0.021 3.979 10 N -0.748 5.748 11 Si 1.014 2.986 12 H -0.254 1.254 13 H -0.263 1.263 14 H -0.244 1.244 15 S -0.083 6.083 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.123 4.123 19 H 0.059 0.941 20 H 0.096 0.904 21 H 0.051 0.949 22 H 0.297 0.703 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -4.331 -1.083 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.388 4.388 4 N -0.110 5.110 5 N -0.241 5.241 6 C -0.117 4.117 7 C -0.437 4.437 8 H 0.133 0.867 9 C -0.206 4.206 10 N -0.370 5.370 11 Si 0.830 3.170 12 H -0.178 1.178 13 H -0.187 1.187 14 H -0.167 1.167 15 S 0.162 5.838 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.162 4.162 19 H 0.078 0.922 20 H 0.115 0.885 21 H 0.070 0.930 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.358 -4.519 -0.986 7.862 hybrid contribution 0.562 0.860 -0.019 1.028 sum -5.796 -3.658 -1.005 6.927 Atomic orbital electron populations 1.21581 0.90548 1.03508 1.02014 1.20319 0.95855 0.84783 0.99210 1.28019 0.92433 0.99352 1.19011 1.70609 1.15446 1.13821 1.11171 1.72764 1.25078 0.93262 1.33010 1.26527 0.87465 1.00330 0.97422 1.19617 0.96206 0.88390 1.39506 0.86691 1.27418 0.93703 1.07187 0.92283 1.70061 1.00814 1.40762 1.25333 0.84735 0.79857 0.72322 0.80083 1.17831 1.18740 1.16663 1.83395 1.18368 1.03331 1.78693 1.22982 1.00314 0.95944 0.97041 1.22790 1.03511 0.95063 0.93908 1.22961 1.00016 0.96117 0.97155 0.92237 0.88510 0.93038 0.89197 0.92558 0.90262 0.87128 0.90719 0.90050 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 8.29 71.98 0.60 -2.85 15 2 C 0.00 0.10 1.35 -52.40 -0.07 0.03 15 3 C -0.11 -5.15 6.48 88.37 0.57 -4.58 15 4 N -0.27 -15.67 11.18 -50.52 -0.56 -16.23 15 5 N -0.39 -24.32 9.96 -54.06 -0.54 -24.86 15 6 C 0.13 7.63 7.18 85.09 0.61 8.24 15 7 C -0.39 -20.71 9.42 23.20 0.22 -20.49 15 8 H 0.12 5.40 7.86 -2.91 -0.02 5.38 15 9 C 0.02 1.02 5.49 85.35 0.47 1.49 15 10 N -0.75 -40.32 11.94 21.88 0.26 -40.06 15 11 Si 1.01 35.09 29.57 68.60 2.03 37.12 15 12 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 13 H -0.26 -8.73 7.11 99.48 0.71 -8.03 15 14 H -0.24 -7.89 7.11 99.48 0.71 -7.18 15 15 S -0.08 -4.05 22.15 -56.49 -1.25 -5.30 15 16 C -0.12 -4.07 7.20 31.18 0.22 -3.84 15 17 C -0.12 -2.94 7.74 31.18 0.24 -2.70 15 18 C -0.12 -4.01 7.22 31.12 0.22 -3.78 15 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.10 2.07 7.34 -2.38 -0.02 2.06 15 21 H 0.05 1.58 7.97 -2.39 -0.02 1.56 15 22 H 0.30 14.11 8.29 -92.70 -0.77 13.34 15 23 H 0.06 2.22 7.76 -2.39 -0.02 2.20 15 24 H 0.08 2.26 8.10 -2.38 -0.02 2.24 15 25 H 0.11 2.09 7.64 -2.39 -0.02 2.07 15 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.08 2.27 8.10 -2.39 -0.02 2.25 15 28 H 0.05 2.02 8.09 -2.39 -0.02 2.00 15 Total: -1.00 -68.28 253.93 4.18 -64.10 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.16 Total: 13.70 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.09 Total: -28.47 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -0.84 Total: -81.15 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.25 Total: -5.30 kcal Total: -68.28 4.18 -64.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.294 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds