Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.50705 * 109.47308 * 119.99774 * 2 1 3 5 5 N 1.31743 * 120.55806 * 300.02272 * 4 2 1 6 6 C 1.32865 * 121.00427 * 179.97438 * 5 4 2 7 7 S 1.76204 * 118.91673 * 180.02562 * 6 5 4 8 8 N 1.32886 * 122.16075 * 0.02562 * 6 5 4 9 9 C 1.31716 * 121.00577 * 359.71928 * 8 6 5 10 10 C 1.41205 * 120.56020 * 120.00133 * 4 2 1 11 11 C 1.41199 * 120.96620 * 359.97438 * 10 4 2 12 12 H 1.07992 * 120.00000 * 29.58676 * 11 10 4 13 13 C 1.39858 * 119.99972 * 209.59201 * 11 10 4 14 14 N 1.30907 * 120.00127 * 196.32474 * 13 11 10 15 15 Si 1.86800 * 120.00201 * 16.31483 * 13 11 10 16 16 H 1.48501 * 109.47416 * 270.00162 * 15 13 11 17 17 H 1.48502 * 109.47103 * 30.00767 * 15 13 11 18 18 H 1.48505 * 109.47061 * 150.00474 * 15 13 11 19 19 H 1.08999 * 109.46932 * 300.00115 * 1 2 3 20 20 H 1.08991 * 109.47348 * 60.00026 * 1 2 3 21 21 H 1.09000 * 109.47272 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46932 * 239.99885 * 2 1 3 23 23 H 1.09002 * 109.46818 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47082 * 300.00065 * 3 2 1 25 25 H 1.08999 * 109.46966 * 59.99862 * 3 2 1 26 26 H 1.40994 * 99.99937 * 90.00366 * 7 6 5 27 27 H 1.08004 * 120.56263 * 180.26942 * 9 8 6 28 28 H 0.96999 * 119.99553 * 355.34731 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7205 -0.2700 2.4324 6 6 2.1581 -0.8897 3.5232 7 16 1.7069 -0.2537 5.1033 8 7 2.9249 -1.9733 3.4616 9 6 3.2822 -2.4866 2.3024 10 6 2.8449 -1.8594 1.1147 11 6 3.2052 -2.3699 -0.1515 12 1 3.2987 -1.7031 -0.9958 13 6 3.4408 -3.7391 -0.3123 14 7 4.0736 -4.1743 -1.3724 15 14 2.8529 -4.9468 0.9859 16 1 3.9171 -5.1360 2.0042 17 1 1.6308 -4.4142 1.6401 18 1 2.5434 -6.2503 0.3453 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 0.5108 -0.9674 5.3220 27 1 3.9021 -3.3701 2.2607 28 1 4.3193 -3.5561 -2.0783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514150.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -0.811209 kcal Electronic energy + Delta-G solvation = -13361.449710 eV Core-core repulsion = 11115.962149 eV Total energy + Delta-G solvation = -2245.487561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33048 -36.83166 -36.28067 -33.58044 -32.53249 -27.96504 -27.69457 -25.66046 -23.69433 -21.64768 -20.74509 -19.06478 -18.05813 -16.98872 -16.25510 -15.86995 -15.70794 -15.23721 -14.84322 -14.71618 -14.28362 -13.90129 -13.00887 -12.93672 -12.56866 -12.41184 -12.21241 -12.17329 -11.97699 -11.76570 -11.43722 -11.11989 -11.05764 -10.18574 -9.95526 -9.49956 -9.07529 -6.88568 0.02319 0.52840 0.71458 1.27344 1.38385 1.60558 1.63477 1.96527 2.44652 3.22213 3.55215 3.74696 4.04793 4.33466 4.36601 4.39461 4.70808 4.84155 4.86710 5.00389 5.05443 5.13707 5.21224 5.29141 5.40244 5.50846 5.92151 5.94900 6.21120 6.57399 7.42375 7.69566 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.012888 C = 0.009153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.254542 B = 2171.972200 C = 3058.319559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 C -0.127 4.127 4 C 0.062 3.938 5 N -0.446 5.446 6 C 0.096 3.904 7 S -0.055 6.055 8 N -0.456 5.456 9 C -0.027 4.027 10 C -0.004 4.004 11 C -0.461 4.461 12 H 0.091 0.909 13 C 0.024 3.976 14 N -0.789 5.789 15 Si 1.087 2.913 16 H -0.253 1.253 17 H -0.283 1.283 18 H -0.262 1.262 19 H 0.052 0.948 20 H 0.081 0.919 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 3.253 0.609 5.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.051 4.051 3 C -0.185 4.185 4 C -0.097 4.097 5 N -0.160 5.160 6 C -0.271 4.271 7 S 0.098 5.902 8 N -0.170 5.170 9 C -0.201 4.201 10 C -0.012 4.012 11 C -0.490 4.490 12 H 0.109 0.891 13 C -0.198 4.198 14 N -0.409 5.409 15 Si 0.909 3.091 16 H -0.178 1.178 17 H -0.209 1.209 18 H -0.187 1.187 19 H 0.071 0.929 20 H 0.100 0.900 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.171 0.829 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.418 2.520 2.757 5.785 hybrid contribution 0.115 0.275 -2.225 2.244 sum -4.303 2.795 0.532 5.159 Atomic orbital electron populations 1.21665 0.93340 1.00979 1.02438 1.19923 0.96687 0.95843 0.92601 1.21682 0.99842 0.94461 1.02500 1.22119 0.97691 0.96859 0.93074 1.68008 1.20490 1.29079 0.98384 1.23220 1.09373 0.98432 0.96105 1.85800 1.32168 1.57213 1.14986 1.68134 1.09261 1.09744 1.29815 1.23244 1.05274 1.03712 0.87831 1.19535 0.91428 0.94840 0.95383 1.20815 1.36993 0.95711 0.95516 0.89105 1.28043 0.90755 0.99368 1.01679 1.70569 1.21055 1.42098 1.07171 0.83369 0.78052 0.74616 0.73087 1.17831 1.20869 1.18738 0.92904 0.89968 0.94375 0.89928 0.94459 0.90016 0.92805 0.94827 0.82912 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.10 71.98 0.66 -3.42 15 2 C -0.03 -1.15 3.07 -11.54 -0.04 -1.19 15 3 C -0.13 -4.08 9.11 71.98 0.66 -3.43 15 4 C 0.06 2.81 5.55 43.30 0.24 3.05 15 5 N -0.45 -20.70 9.95 -182.39 -1.82 -22.52 15 6 C 0.10 4.53 7.91 180.23 1.43 5.95 15 7 S -0.05 -2.08 26.14 -56.49 -1.48 -3.56 15 8 N -0.46 -22.43 10.36 -194.21 -2.01 -24.44 15 9 C -0.03 -1.31 8.54 85.45 0.73 -0.58 15 10 C 0.00 -0.19 5.15 -21.08 -0.11 -0.30 15 11 C -0.46 -21.67 8.66 23.39 0.20 -21.47 15 12 H 0.09 4.24 6.69 -2.91 -0.02 4.22 15 13 C 0.02 1.08 5.45 85.22 0.46 1.54 15 14 N -0.79 -36.42 13.66 21.81 0.30 -36.12 15 15 Si 1.09 44.08 24.89 68.60 1.71 45.78 15 16 H -0.25 -9.70 6.45 99.48 0.64 -9.06 15 17 H -0.28 -12.24 6.98 99.48 0.69 -11.55 15 18 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 19 H 0.05 1.75 8.07 -2.39 -0.02 1.73 15 20 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.08 3.11 5.89 -2.39 -0.01 3.10 15 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.05 1.79 8.07 -2.39 -0.02 1.77 15 26 H 0.09 3.02 9.55 73.80 0.70 3.72 15 27 H 0.15 7.04 4.47 -2.91 -0.01 7.03 15 28 H 0.30 13.13 8.73 -92.71 -0.81 12.33 15 Total: -1.00 -52.66 252.12 2.71 -49.96 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.78 Total: 10.73 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.23 Total: -19.84 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.53 Total: -83.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.71 Total: 45.78 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.48 Total: -3.56 kcal Total: -52.66 2.71 -49.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514150.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.147 kcal (2) G-P(sol) polarization free energy of solvation -52.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds